Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

45415141 .. 45423132

Gene Structure 7992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG337700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGGGAGCTGGCATCTCAGAAACATGTTCGATTCATTTTATCAAAAGCAAAGGAGGACTCTTATGAGTCGGTTTTGATGGAGCATATAAGATTGAATGGAGCTTACTGGGGTTTGACAACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCGATGAGGTTGTTTCAGAGGTCATGCAGTGCCAGCATGAGTCAGGTGGCTTTGGTGGTAACAGTGGACATGATCCACACATACTCTATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTCGAAAAAGTTGCAGATTATGTAGCTGGACTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGGTTTTCATATATTGCTATTTGTTGTCTCGCATTACTACATCTTTTGGATAAAATCAATGTGGAGAAAGCTGTGGACTATATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGGTCAAATTTTCTGTTGTGTGGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGCGAGCGGCAAGTTAAATCAGGTGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCGATAAGCAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACACTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTTGCAGGTTGTAAAAATGAAAGCTTTCTCGAAGTTTTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

293

Amino Acids

32.39

Weight (kDa)

4.77

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	4 - 282	9.2e-98	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	253, 518, 833
AccBSI	CCGCTC	1 cut(s)	619
AciI	CCGC	2 cut(s)	492, 619
AclWI	GGATC	3 cut(s)	224, 355, 734
AcsI	RAATTY	2 cut(s)	534, 786
AflII	CTTAAG	1 cut(s)	250
AflIII	ACRYGT	2 cut(s)	25, 363
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	508, 765
AluBI	AGCT	8 cut(s)	10, 104, 142, 326, 455, 661, 742, 861
AluI	AGCT	8 cut(s)	10, 104, 142, 326, 455, 661, 742, 861
Alw26I	GTCTC	3 cut(s)	416, 525, 576
AlwI	GGATC	3 cut(s)	224, 355, 734
AoxI	GGCC	1 cut(s)	270
ApoI	RAATTY	2 cut(s)	534, 786
Asp700I	GAANNNNTTC	1 cut(s)	861
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	556
BccI	CCATC	4 cut(s)	73, 338, 482, 597
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	510, 767
BcoDI	GTCTC	3 cut(s)	416, 525, 576
BfaI	CTAG	1 cut(s)	696
BfrI	CTTAAG	1 cut(s)	250
BfuAI	ACCTGC	3 cut(s)	253, 518, 833
BisI	GCNGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	2 cut(s)	510, 767
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	510, 767
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	4 cut(s)	23, 491, 796, 805
BmuI	ACTGGG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	729
BsaI	GGTCTC	1 cut(s)	576
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	510, 767
BseCI	ATCGAT	1 cut(s)	729
BseGI	GGATG	4 cut(s)	160, 304, 506, 608
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	729
BslFI	GGGAC	1 cut(s)	374
BsmAI	GTCTC	3 cut(s)	416, 525, 576
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	4 cut(s)	127, 229, 347, 726
BspACI	CCGC	2 cut(s)	492, 619
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	729
BspHI	TCATGA	2 cut(s)	484, 705
BspLI	GGNNCC	1 cut(s)	553
BspMI	ACCTGC	3 cut(s)	253, 518, 833
BspPI	GGATC	3 cut(s)	224, 355, 734
BspTI	CTTAAG	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	576
BsrBI	CCGCTC	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	113
BssMI	GATC	4 cut(s)	127, 229, 347, 726
Bst2UI	CCWGG	2 cut(s)	510, 767
Bst4CI	ACNGT	3 cut(s)	151, 221, 387
BstAFI	CTTAAG	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	815
BstC8I	GCNNGC	5 cut(s)	12, 191, 506, 617, 744
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	4 cut(s)	160, 304, 506, 608
BstKTI	GATC	4 cut(s)	130, 232, 350, 729
BstMAI	GTCTC	3 cut(s)	416, 525, 576
BstMBI	GATC	4 cut(s)	127, 229, 347, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 815
BstNI	CCWGG	2 cut(s)	510, 767
BstNSI	RCATGY	3 cut(s)	29, 367, 813
BstSCI	CCNGG	2 cut(s)	508, 765
Bsu15I	ATCGAT	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	729
BtsCI	GGATG	4 cut(s)	160, 304, 506, 608
BtsI	GCAGTG	1 cut(s)	191
BtsIMutI	CAGTG	4 cut(s)	147, 191, 226, 771
BveI	ACCTGC	3 cut(s)	253, 518, 833
Cac8I	GCNNGC	5 cut(s)	12, 191, 506, 617, 744
CciI	TCATGA	2 cut(s)	484, 705
Cfr13I	GGNCC	1 cut(s)	592
ClaI	ATCGAT	1 cut(s)	729
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	4 cut(s)	129, 231, 349, 728
DpnII	GATC	4 cut(s)	127, 229, 347, 726
EciI	GGCGGA	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	556
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	508, 765
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	556
FaqI	GGGAC	1 cut(s)	374
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	4 cut(s)	167, 311, 513, 615
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	1 cut(s)	696
GluI	GCNGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	272
HindIII	AAGCTT	4 cut(s)	140, 659, 740, 859
HinfI	GANTC	5 cut(s)	33, 59, 68, 197, 518
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	224, 460
Hpy188I	TCNGA	3 cut(s)	21, 175, 793
Hpy188III	TCNNGA	6 cut(s)	125, 485, 653, 665, 706, 866
Hpy8I	GTNNAC	2 cut(s)	224, 460
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	3 cut(s)	151, 221, 387
HpyCH4V	TGCA	8 cut(s)	184, 262, 314, 334, 504, 527, 809, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 815
HpyF3I	CTNAG	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	127, 229, 347, 726
LmnI	GCTCC	4 cut(s)	7, 82, 101, 551
LweI	GCATC	4 cut(s)	23, 491, 796, 805
MaeI	CTAG	1 cut(s)	696
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	4 cut(s)	129, 231, 349, 728
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	4 cut(s)	127, 229, 347, 726
MboII	GAAGA	2 cut(s)	122, 353
MhlI	GDGCHC	1 cut(s)	556
MluCI	AATT	2 cut(s)	534, 786
MlyI	GAGTC	4 cut(s)	53, 77, 206, 527
MnlI	CCTC	3 cut(s)	49, 157, 169
Mph1103I	ATGCAT	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	861
MseI	TTAA	5 cut(s)	251, 470, 627, 642, 701
MspCI	CTTAAG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	510, 767
MvaI	CCWGG	2 cut(s)	510, 767
MwoI	GCNNNNNNNGC	2 cut(s)	190, 815
NdeII	GATC	4 cut(s)	127, 229, 347, 726
NlaIV	GGNNCC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	3 cut(s)	29, 367, 813
PagI	TCATGA	2 cut(s)	484, 705
PciI	ACATGT	2 cut(s)	25, 363
PdmI	GAANNNNTTC	1 cut(s)	861
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	621
PleI	GAGTC	4 cut(s)	53, 76, 205, 526
PpsI	GAGTC	4 cut(s)	53, 76, 205, 526
PpuMI	RGGWCCY	1 cut(s)	592
PscI	ACATGT	2 cut(s)	25, 363
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	508, 765
PspGI	CCWGG	2 cut(s)	508, 765
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
SaqAI	TTAA	5 cut(s)	251, 470, 627, 642, 701
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	4 cut(s)	127, 229, 347, 726
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	4 cut(s)	53, 77, 206, 527
ScrFI	CCNGG	2 cut(s)	510, 767
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	4 cut(s)	23, 491, 796, 805
SinI	GGWCC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	534, 786
SsiI	CCGC	2 cut(s)	492, 619
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	508, 765
TaaI	ACNGT	3 cut(s)	151, 221, 387
TaqI	TCGA	5 cut(s)	31, 159, 303, 729, 867
TasI	AATT	2 cut(s)	534, 786
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	5 cut(s)	251, 470, 627, 642, 701
Tru9I	TTAA	5 cut(s)	251, 470, 627, 642, 701
TscAI	CASTG	4 cut(s)	154, 191, 226, 778
TspDTI	ATGAA	6 cut(s)	25, 354, 381, 710, 742, 870
TspRI	CASTG	4 cut(s)	154, 191, 226, 778
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	2 cut(s)	534, 786
XceI	RCATGY	3 cut(s)	29, 367, 813
XcmI	CCANNNNNNNNNTGG	1 cut(s)	830
XmnI	GAANNNNTTC	1 cut(s)	861
XspI	CTAG	1 cut(s)	696
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.