Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

52089454 .. 52091581

Gene Structure 2128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG405600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTCGAAGCAAAGGAGAAGGACTCTTATGAGTCAGTTTTGATGGAGGATATAAGAATGAATGGAGCTTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCAATGAGGTTTTGGCCTTACTTGACAAGGTTGATGTTTTGGATGTTGAAAAGGTTGCAGATTACGTAGCAGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACATGGTTTTCTTATATTGCTATCTGCTGTCAAATTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACTTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTAGCAGGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

198

Amino Acids

22.31

Weight (kDa)

4.36

Isoelectric Point (pI)

12.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	44 - 92	2.6e-06	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	93 - 198	5.4e-40	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	364
AciI	CCGC	1 cut(s)	364
AclWI	GGATC	2 cut(s)	220, 479
AcsI	RAATTY	2 cut(s)	279, 531
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	170, 521
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	4 cut(s)	68, 106, 406, 487
AluI	AGCT	4 cut(s)	68, 106, 406, 487
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	220, 479
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	279, 531
AsuHPI	GGTGA	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	3 cut(s)	37, 203, 342
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	578
BisI	GCNGC	2 cut(s)	197, 365
BlsI	GCNGC	2 cut(s)	198, 366
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	541, 550
BmuI	ACTGGG	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
Bpu14I	TTCGAA	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	512
BseGI	GGATG	3 cut(s)	124, 169, 353
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	91, 212, 471
BspACI	CCGC	1 cut(s)	364
BspANI	GGCC	1 cut(s)	137
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	220, 479
BspT104I	TTCGAA	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	91, 212, 471
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	489
BstF5I	GGATG	3 cut(s)	124, 169, 353
BstKTI	GATC	3 cut(s)	94, 215, 474
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	91, 212, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	2 cut(s)	232, 558
BstSCI	CCNGG	1 cut(s)	510
BstSNI	TACGTA	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	124, 169, 353
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	1 cut(s)	489
CciI	TCATGA	1 cut(s)	450
CviAII	CATG	5 cut(s)	229, 249, 426, 451, 555
CviJI	RGCY	7 cut(s)	68, 106, 137, 196, 299, 406, 487
CviKI_1	RGCY	7 cut(s)	68, 106, 137, 196, 299, 406, 487
DpnI	GATC	3 cut(s)	93, 214, 473
DpnII	GATC	3 cut(s)	91, 212, 471
Eco105I	TACGTA	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	5 cut(s)	232, 252, 429, 454, 558
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	5 cut(s)	228, 248, 425, 450, 554
Fnu4HI	GCNGC	2 cut(s)	197, 365
FokI	GGATG	3 cut(s)	131, 176, 360
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	197, 365
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	2 cut(s)	197, 365
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	232, 252, 429, 454, 558
HindIII	AAGCTT	3 cut(s)	104, 404, 485
HinfI	GANTC	3 cut(s)	23, 32, 85
HphI	GGTGA	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	296, 538
Hpy188III	TCNNGA	5 cut(s)	89, 378, 398, 410, 451
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	179, 199, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	232, 252, 429, 454, 558
Kzo9I	GATC	3 cut(s)	91, 212, 471
LmnI	GCTCC	2 cut(s)	65, 296
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	2 cut(s)	541, 550
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	186
MalI	GATC	3 cut(s)	93, 214, 473
MbiI	CCGCTC	1 cut(s)	364
MboI	GATC	3 cut(s)	91, 212, 471
MboII	GAAGA	2 cut(s)	86, 218
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	2 cut(s)	279, 531
MlyI	GAGTC	3 cut(s)	17, 41, 79
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	40, 121, 374
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	3 cut(s)	372, 387, 446
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	1 cut(s)	560
NdeII	GATC	3 cut(s)	91, 212, 471
NlaIII	CATG	5 cut(s)	232, 252, 429, 454, 558
NlaIV	GGNNCC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	232, 558
NspV	TTCGAA	1 cut(s)	6
PagI	TCATGA	1 cut(s)	450
PciI	ACATGT	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	198, 366
PleI	GAGTC	3 cut(s)	17, 40, 79
PpsI	GAGTC	3 cut(s)	17, 40, 79
Ppu21I	YACGTR	1 cut(s)	187
PscI	ACATGT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	372, 387, 446
SatI	GCNGC	2 cut(s)	197, 365
Sau3AI	GATC	3 cut(s)	91, 212, 471
SchI	GAGTC	3 cut(s)	17, 41, 79
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	541, 550
SfuI	TTCGAA	1 cut(s)	6
SnaBI	TACGTA	1 cut(s)	187
Sse9I	AATT	2 cut(s)	279, 531
SsiI	CCGC	1 cut(s)	364
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	279, 531
TauI	GCSGC	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	372, 387, 446
Tru9I	TTAA	3 cut(s)	372, 387, 446
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	4 cut(s)	74, 219, 455, 487
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	2 cut(s)	279, 531
XceI	RCATGY	2 cut(s)	232, 558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.