Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

63888365 .. 63888896

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCGGTGTCGGCATGAGTCGGTGGGCTTTGGTGGTAACGGTGGACATGATCCACACATACTCTATACCTTAAGTGTGTGCAGGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTCGAAAAAGTTGCAGATTATGTAGCTGGATTGCAAAATGAAGATGGATCATTTTCGGGGACGTGTGGGGTGAAGTTGATACACGGTCAAATTTTCTGTTGTGTGGGAGCCCTTGCTATCACGGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGAAGGTGGTTATGCGAGCGGCAAGTTAAATCAGGTGGTCTTAATGGTCGTCCGAGAAGCTTCCCGATGTGTACTACTCATGGTGACGTTGTGATTTCTGTTGAGCGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

129

Amino Acids

13.97

Weight (kDa)

6.98

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	2 - 61	4.8e-09	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	69 - 111	9.5e-10	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	295
AciI	CCGC	2 cut(s)	4, 295
AclWI	GGATC	2 cut(s)	44, 175
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	1 cut(s)	349
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	182
AjiI	CACGTC	1 cut(s)	183
AluBI	AGCT	3 cut(s)	146, 336, 387
AluI	AGCT	3 cut(s)	146, 336, 387
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	44, 175
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	202, 371
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	232
BccI	CCATC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	388
BfrI	CTTAAG	1 cut(s)	70
BisI	GCNGC	2 cut(s)	296, 385
BlsI	GCNGC	2 cut(s)	297, 386
Bme18I	GGWCC	1 cut(s)	268
BmgBI	CACGTC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	252
BseGI	GGATG	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	49, 167
BspACI	CCGC	2 cut(s)	4, 295
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	2 cut(s)	44, 175
BspTI	CTTAAG	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	295
BssMI	GATC	2 cut(s)	49, 167
Bst4CI	ACNGT	2 cut(s)	41, 206
BstAFI	CTTAAG	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	52, 170
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	49, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	92
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	3 cut(s)	14, 47, 356
CviJI	RGCY	6 cut(s)	27, 92, 146, 230, 336, 387
CviKI_1	RGCY	6 cut(s)	27, 92, 146, 230, 336, 387
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	2 cut(s)	51, 169
DpnII	GATC	2 cut(s)	49, 167
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	232
FaeI	CATG	3 cut(s)	17, 50, 359
FaiI	YATR	7 cut(s)	15, 48, 59, 66, 141, 289, 357
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	3 cut(s)	13, 46, 355
Fnu4HI	GCNGC	2 cut(s)	296, 385
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	296, 385
FspBI	CTAG	1 cut(s)	388
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	296, 385
HaeIII	GGCC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	17, 50, 359
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	1 cut(s)	17
HphI	GGTGA	2 cut(s)	202, 371
Hpy166II	GTNNAC	2 cut(s)	44, 348
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	2 cut(s)	44, 348
HpyAV	CCTTC	2 cut(s)	273, 281
HpyCH4III	ACNGT	2 cut(s)	41, 206
HpyCH4IV	ACGT	2 cut(s)	182, 363
HpyCH4V	TGCA	3 cut(s)	81, 134, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	182, 363
Hsp92II	CATG	3 cut(s)	17, 50, 359
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	49, 167
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	3 cut(s)	67, 132, 294
MaeI	CTAG	1 cut(s)	388
MaeII	ACGT	2 cut(s)	182, 363
MaeIII	GTNAC	2 cut(s)	35, 359
MalI	GATC	2 cut(s)	51, 169
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	2 cut(s)	49, 167
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	26
MseI	TTAA	3 cut(s)	71, 303, 318
MspCI	CTTAAG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	49, 167
NlaIII	CATG	3 cut(s)	17, 50, 359
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	297, 386
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	268
PspPPI	RGGWCCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	71, 303, 318
SatI	GCNGC	2 cut(s)	296, 385
Sau3AI	GATC	2 cut(s)	49, 167
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	4, 295
SspMI	CTAG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	41, 206
TaiI	ACGT	2 cut(s)	185, 366
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	210
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	1 cut(s)	298
Tru1I	TTAA	3 cut(s)	71, 303, 318
Tru9I	TTAA	3 cut(s)	71, 303, 318
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.