Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

21991482 .. 21991733

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATTCTGTGGGCAATATGGAAAGATAGGAATAACATGTTGTGGAATAATAAGAAACAGTCAGGTGATGCCCTAGTCCTCAGTTCACTTGCTTGGTTGGATGATTTTCACAAAGCACAACAAGTTGCAAGTTTGGCTCACTCAAAACTGAGAAAGACTTGGAGGCCGGCAGAAGTGGGAGTTTGGAAGCTCAATGTGGATGGTAGTTTCATTCCAAACACTAATGTAGGTGGTGTGGGAGGTGTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

83

Amino Acids

9.3

Weight (kDa)

9.87

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	36
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AoxI	GGCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	77
BccI	CCATC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	166
BseGI	GGATG	2 cut(s)	106, 205
BseMII	CTCAG	2 cut(s)	94, 140
BshFI	GGCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	167
BsnI	GGCC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	93, 141
BsrFI	RCCGGY	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	80, 149
BstF5I	GGATG	2 cut(s)	106, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	106, 205
Cac8I	GCNNGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	166
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	3 cut(s)	137, 166, 190
CviKI_1	RGCY	3 cut(s)	137, 166, 190
DdeI	CTNAG	2 cut(s)	80, 149
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	19, 38, 250
FatI	CATG	1 cut(s)	36
FokI	GGATG	2 cut(s)	113, 212
FspBI	CTAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	80, 149
Hsp92II	CATG	1 cut(s)	40
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
LpnPI	CCDG	2 cut(s)	48, 180
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	89, 156, 233
MroNI	GCCGGC	1 cut(s)	166
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	134
NaeI	GCCGGC	1 cut(s)	168
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	40
NspI	RCATGY	1 cut(s)	40
PciI	ACATGT	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	4
PscI	ACATGT	1 cut(s)	36
SetI	ASST	4 cut(s)	67, 192, 232, 244
SfaNI	GCATC	1 cut(s)	58
SgeI	CNNG	9 cut(s)	49, 75, 86, 101, 105, 134, 141, 171, 179
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	40
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.