Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

80288376 .. 80290637

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG572600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGCATATAAGATTGAATGGGGCATATTGGGGTTTGACCACTCTTGATCTTCTTGGAAAGCTTGATACCGTCGATGTCAATGAAGTTGTTTCAGAGGTCCTCCAGTGCCAGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCACACATACTTTATACCTTAAGTGCCGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATACTGAAAAGGTTGCAAATTATGTAGCTGGGCTGCAAAATGAAGATGGCTCTTTTTCAGGGGACATGTGGGGTGAAGTTGATACGCGGTTTTCGTATATTGCTATCTGTTGTCTAGCATTACTACATCATTTGGATAAAATTAATGTGGAGAAGTCTGTATACTACATATTAAGTTGTAAAAATCACGATGGCGGATTTGGATGCACGCCTGGTGGAGAGTCTCATGCTGGTCAGATTTTTTGTTGTGTGGGTGCTCTAGCTATCACAGGGTCTCTACATCGTATTGACAAGGATCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTGAAAGCAGGAGGTCTTAATGGCCGTCCTGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTGATCATGATTGACAGAGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGTCAGGTTTTACACAACCTATTTGTACATTTGGAATTTAGGAGTTTCGAAAGTGAAATTCTAATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

251

Amino Acids

28.05

Weight (kDa)

5.27

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	2 - 230	3.6e-81	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccBSI	CCGCTC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	1 cut(s)	307
AciI	CCGC	3 cut(s)	307, 414, 541
AclWI	GGATC	2 cut(s)	522, 656
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	2 cut(s)	719, 741
AfaI	GTAC	1 cut(s)	711
AflII	CTTAAG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	5 cut(s)	64, 248, 482, 583, 664
AluI	AGCT	5 cut(s)	64, 248, 482, 583, 664
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	2 cut(s)	447, 498
AlwI	GGATC	2 cut(s)	522, 656
AoxI	GGCC	2 cut(s)	192, 568
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	719, 741
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	732
AvaII	GGWCC	1 cut(s)	100
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	3 cut(s)	260, 404, 519
BceAI	ACGGC	2 cut(s)	164, 555
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	2 cut(s)	447, 498
BfaI	CTAG	3 cut(s)	335, 479, 618
BfrI	CTTAAG	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	254, 542
BlsI	GCNGC	2 cut(s)	255, 543
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	89
Bpu14I	TTCGAA	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	428, 530
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	2 cut(s)	194, 570
BsiHKAI	GWGCWC	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	447, 498
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	194, 570
Bso31I	GGTCTC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	732
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	4 cut(s)	49, 514, 624, 648
BspACI	CCGC	3 cut(s)	307, 414, 541
BspANI	GGCC	2 cut(s)	194, 570
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	627
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	522, 656
BspT104I	TTCGAA	1 cut(s)	732
BspTI	CTTAAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	498
BsrBI	CCGCTC	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	106
BssMI	GATC	4 cut(s)	49, 514, 624, 648
BssNAI	GTATAC	1 cut(s)	382
Bst1107I	GTATAC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	73, 686
BstAFI	CTTAAG	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	709
BstBI	TTCGAA	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	113, 428, 666
BstDEI	CTNAG	1 cut(s)	576
BstF5I	GGATG	2 cut(s)	428, 530
BstFNI	CGCG	1 cut(s)	307
BstKTI	GATC	4 cut(s)	52, 517, 627, 651
BstMAI	GTCTC	2 cut(s)	447, 498
BstMBI	GATC	4 cut(s)	49, 514, 624, 648
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BstZ17I	GTATAC	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	194, 570
BtsCI	GGATG	2 cut(s)	428, 530
BtsIMutI	CAGTG	1 cut(s)	113
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	3 cut(s)	113, 428, 666
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	7 cut(s)	116, 149, 286, 446, 603, 628, 751
CviJI	RGCY	9 cut(s)	64, 194, 248, 253, 270, 482, 570, 583, 664
CviKI_1	RGCY	9 cut(s)	64, 194, 248, 253, 270, 482, 570, 583, 664
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	4 cut(s)	51, 516, 626, 650
DpnII	GATC	4 cut(s)	49, 514, 624, 648
EaeI	YGGCCR	1 cut(s)	568
EciI	GGCGGA	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	7 cut(s)	119, 152, 289, 449, 606, 631, 754
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	7 cut(s)	115, 148, 285, 445, 602, 627, 750
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	254, 542
FokI	GGATG	2 cut(s)	435, 537
Fsp4HI	GCNGC	2 cut(s)	254, 542
FspBI	CTAG	3 cut(s)	335, 479, 618
GluI	GCNGC	2 cut(s)	254, 542
GsaI	CCCAGC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	194, 570
Hin1II	CATG	7 cut(s)	119, 152, 289, 449, 606, 631, 754
HindIII	AAGCTT	3 cut(s)	62, 581, 662
HinfI	GANTC	2 cut(s)	119, 440
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	97, 456
Hpy188III	TCNNGA	5 cut(s)	47, 407, 575, 587, 628
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	73, 686
HpyCH4V	TGCA	4 cut(s)	184, 236, 256, 426
HpyF3I	CTNAG	1 cut(s)	576
Hsp92II	CATG	7 cut(s)	119, 152, 289, 449, 606, 631, 754
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	49, 514, 624, 648
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	413
MaeI	CTAG	3 cut(s)	335, 479, 618
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	51, 516, 626, 650
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	4 cut(s)	49, 514, 624, 648
MboII	GAAGA	3 cut(s)	44, 275, 509
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	4 cut(s)	238, 360, 719, 741
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	3 cut(s)	91, 113, 551
MseI	TTAA	4 cut(s)	173, 363, 392, 564
MspCI	CTTAAG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	307
NdeII	GATC	4 cut(s)	49, 514, 624, 648
NlaIII	CATG	7 cut(s)	119, 152, 289, 449, 606, 631, 754
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	732
PagI	TCATGA	1 cut(s)	627
PciI	ACATGT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	255, 543
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	100
PscI	ACATGT	1 cut(s)	285
PshBI	ATTAAT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	100
PspPPI	RGGWCCY	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
SaqAI	TTAA	4 cut(s)	173, 363, 392, 564
SatI	GCNGC	2 cut(s)	254, 542
Sau3AI	GATC	4 cut(s)	49, 514, 624, 648
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	1 cut(s)	413
SfuI	TTCGAA	1 cut(s)	732
SinI	GGWCC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	4 cut(s)	238, 360, 719, 741
SsiI	CCGC	3 cut(s)	307, 414, 541
SspMI	CTAG	3 cut(s)	335, 479, 618
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	73, 686
TaqI	TCGA	2 cut(s)	75, 732
TasI	AATT	4 cut(s)	238, 360, 719, 741
TatI	WGTACW	1 cut(s)	709
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	173, 363, 392, 564
Tru9I	TTAA	4 cut(s)	173, 363, 392, 564
TscAI	CASTG	1 cut(s)	113
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	99, 132, 276, 632, 664
TspRI	CASTG	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	719, 741
XceI	RCATGY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	3 cut(s)	335, 479, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.