Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

1944503 .. 1946953

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGGGAGCTTGCAACTCGGAAACATGTTGAATTCATTGTATCGGTCGAAAAGAGAAAGGACTCTTTTGAGGCGGTTGCGATGGAGCATATAAGAATGAGTGGGGCGTACTGGGGTCTGACTACTCTTGATCTTTTGGGAAAGCTCCACGTTGTGGATGTTGAAGAGGTTGTTTCCTGGGTCATCCAGTGCCAACATGATTCAGGCGGGTTTGGAGGTAGCATTGGGCACGACCCACACATACTGTATACGTTAAGTGCTGTGCAGGTTTTGGCCTTGTTTGACAAGCTTGATGTTCTGGATGTTGAGAAGGTTGTAAGTTATGTTGCTGGGTTGCAAAATGAAGATGGATCATTTTCAGGTGACATGTGGGGTGAAATTGATACACGGTTTTCTTATATTGCTATCTGTTGTCTCTCATTACTACATCGTTTGGATAAAATCAATGTGGAGAAGGCCGTCAGCTACATTTTAAGTTGTAAAAATCATGATGGAGGGTTTGGATCTACGCCCGGTGCGGAGTCTCATGCAGGTCAAATTTTCTGTTGCGTGGGTGCCCTTGCCATTACGGGGTCACTACATCATATTGACAAGGACCTCCTCGGTTGGTGGTTATGTGAGCGGCAAGATAATAAAACTGGAGGTCTTAGTGGTCGGCCAGAGAAACTTCCCGACGTCTGCTACTCATGGTGGGCTCTTTCCAGTTTGATCATGATTGACAGAGTTCATTGGATCAATAAGGACAAACTCATCAAGTTCATTTTAAACTGCCAGGACATTGAAAATGGAGGAATTTCTGACCGACCAGATGATGCCGTTGATGTCTACCATACCTACTTTGGTGTAGCTGGACTTTCCCTTCTTGAATATCCAGGGTTGAAAGCTATCGATCCGGCATACGCTTTGCCAGTTGATGTCGTAAATAGGATTATATTGGACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

315

Amino Acids

34.76

Weight (kDa)

5.15

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	678
Acc36I	ACCTGC	2 cut(s)	256, 521
AccB1I	GGYRCC	1 cut(s)	554
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccBSI	CCGCTC	1 cut(s)	622
AccI	GTMKAC	2 cut(s)	248, 825
AciI	CCGC	4 cut(s)	74, 207, 518, 622
AclWI	GGATC	4 cut(s)	358, 511, 740, 884
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	3 cut(s)	32, 537, 792
AcyI	GRCGYC	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	154, 570
AflIII	ACRYGT	2 cut(s)	25, 366
AgsI	TTSAA	5 cut(s)	32, 164, 782, 866, 880
AjnI	CCWGG	3 cut(s)	176, 771, 871
AluBI	AGCT	6 cut(s)	10, 145, 289, 465, 848, 884
AluI	AGCT	6 cut(s)	10, 145, 289, 465, 848, 884
Alw26I	GTCTC	2 cut(s)	419, 528
AlwI	GGATC	4 cut(s)	358, 511, 740, 884
AoxI	GGCC	3 cut(s)	273, 456, 656
ApoI	RAATTY	3 cut(s)	32, 537, 792
AspS9I	GGNCC	1 cut(s)	595
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	374, 386
AvaII	GGWCC	1 cut(s)	595
BaeGI	GKGCMC	2 cut(s)	231, 559
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	697
BccI	CCATC	3 cut(s)	76, 341, 485
BceAI	ACGGC	2 cut(s)	443, 800
BciT130I	CCWGG	3 cut(s)	178, 773, 873
BclI	TGATCA	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	419, 528
BfuAI	ACCTGC	2 cut(s)	256, 521
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
Bme1390I	CCNGG	4 cut(s)	178, 513, 773, 873
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	4 cut(s)	178, 513, 773, 873
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	802
BmuI	ACTGGG	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	513
Bsa29I	ATCGAT	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	675
BsaJI	CCNNGG	3 cut(s)	177, 601, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 570
Bse1I	ACTGG	5 cut(s)	116, 187, 643, 702, 908
BseBI	CCWGG	3 cut(s)	178, 773, 873
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	3 cut(s)	177, 601, 872
BseGI	GGATG	3 cut(s)	163, 183, 307
BseLI	CCNNNNNNNGG	2 cut(s)	154, 570
BseNI	ACTGG	5 cut(s)	116, 187, 643, 702, 908
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	2 cut(s)	231, 559
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	284
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	275, 458, 658
BshNI	GGYRCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	888
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	513, 893
BslI	CCNNNNNNNGG	2 cut(s)	154, 570
BsmAI	GTCTC	2 cut(s)	419, 528
BsnI	GGCC	3 cut(s)	275, 458, 658
Bsp1286I	GDGCHC	3 cut(s)	231, 559, 697
Bsp143I	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
BspACI	CCGC	4 cut(s)	74, 207, 518, 622
BspANI	GGCC	3 cut(s)	275, 458, 658
BspDI	ATCGAT	1 cut(s)	888
BspHI	TCATGA	2 cut(s)	487, 711
BspLI	GGNNCC	1 cut(s)	556
BspMI	ACCTGC	2 cut(s)	256, 521
BspPI	GGATC	4 cut(s)	358, 511, 740, 884
BspT107I	GGYRCC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	622
BsrI	ACTGG	5 cut(s)	116, 187, 643, 702, 908
BssECI	CCNNGG	3 cut(s)	177, 601, 872
BssMI	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
BssNAI	GTATAC	1 cut(s)	249
BssNI	GRCGYC	1 cut(s)	675
Bst1107I	GTATAC	1 cut(s)	249
Bst2UI	CCWGG	3 cut(s)	178, 773, 873
Bst4CI	ACNGT	2 cut(s)	246, 390
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	163, 183, 307
BstKTI	GATC	6 cut(s)	133, 353, 506, 711, 735, 892
BstMAI	GTCTC	2 cut(s)	419, 528
BstMBI	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	3 cut(s)	178, 773, 873
BstNSI	RCATGY	2 cut(s)	29, 370
BstSCI	CCNGG	4 cut(s)	176, 511, 771, 871
BstSLI	GKGCMC	2 cut(s)	231, 559
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BstZ17I	GTATAC	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	888
BsuRI	GGCC	3 cut(s)	275, 458, 658
BsuTUI	ATCGAT	1 cut(s)	888
BtgZI	GCGATG	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	163, 183, 307
BtsIMutI	CAGTG	1 cut(s)	194
BveI	ACCTGC	2 cut(s)	256, 521
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	2 cut(s)	487, 711
Cfr13I	GGNCC	1 cut(s)	595
ClaI	ATCGAT	1 cut(s)	888
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	7 cut(s)	26, 197, 367, 488, 527, 687, 712
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	6 cut(s)	132, 352, 505, 710, 734, 891
DpnII	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
DraI	TTTAAA	1 cut(s)	765
DraIII	CACNNNGTG	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	595
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	3 cut(s)	176, 771, 871
EcoT38I	GRGCYC	1 cut(s)	697
FaeI	CATG	7 cut(s)	29, 200, 370, 491, 530, 690, 715
FatI	CATG	7 cut(s)	25, 196, 366, 487, 526, 686, 711
FauI	CCCGC	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	708
FblI	GTMKAC	2 cut(s)	248, 825
Fnu4HI	GCNGC	1 cut(s)	623
FokI	GGATG	3 cut(s)	170, 170, 314
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	623
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	275, 458, 658
HapII	CCGG	2 cut(s)	513, 893
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	7 cut(s)	29, 200, 370, 491, 530, 690, 715
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	62, 200, 521
HpaII	CCGG	2 cut(s)	513, 893
HphI	GGTGA	2 cut(s)	374, 386
Hpy166II	GTNNAC	2 cut(s)	249, 826
Hpy188I	TCNGA	3 cut(s)	21, 120, 799
Hpy188III	TCNNGA	6 cut(s)	128, 299, 488, 671, 712, 863
Hpy8I	GTNNAC	2 cut(s)	249, 826
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	3 cut(s)	304, 448, 869
HpyCH4III	ACNGT	2 cut(s)	246, 390
HpyCH4IV	ACGT	3 cut(s)	150, 251, 675
HpyCH4V	TGCA	4 cut(s)	14, 265, 337, 530
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	3 cut(s)	150, 251, 675
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	7 cut(s)	29, 200, 370, 491, 530, 690, 715
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
LmnI	GCTCC	3 cut(s)	7, 85, 150
LweI	GCATC	1 cut(s)	802
MaeII	ACGT	3 cut(s)	150, 251, 675
MaeIII	GTNAC	2 cut(s)	362, 573
MalI	GATC	6 cut(s)	132, 352, 505, 710, 734, 891
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
MboII	GAAGA	2 cut(s)	176, 356
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	3 cut(s)	231, 559, 697
MluCI	AATT	4 cut(s)	32, 378, 537, 792
MlyI	GAGTC	2 cut(s)	56, 530
MnlI	CCTC	8 cut(s)	64, 160, 209, 488, 608, 611, 635, 782
MseI	TTAA	3 cut(s)	254, 473, 764
MspI	CCGG	2 cut(s)	513, 893
MspR9I	CCNGG	4 cut(s)	178, 513, 773, 873
MvaI	CCWGG	3 cut(s)	178, 773, 873
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
NlaIII	CATG	7 cut(s)	29, 200, 370, 491, 530, 690, 715
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	2 cut(s)	362, 573
NspI	RCATGY	2 cut(s)	29, 370
PagI	TCATGA	2 cut(s)	487, 711
PciI	ACATGT	2 cut(s)	25, 366
PfeI	GAWTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	624
PleI	GAGTC	2 cut(s)	56, 529
PpsI	GAGTC	2 cut(s)	56, 529
PpuMI	RGGWCCY	1 cut(s)	595
PscI	ACATGT	2 cut(s)	25, 366
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	3 cut(s)	176, 771, 871
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	3 cut(s)	176, 771, 871
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	1 cut(s)	595
PspPPI	RGGWCCY	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	254, 473, 764
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	6 cut(s)	130, 350, 503, 708, 732, 889
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	2 cut(s)	56, 530
ScrFI	CCNGG	4 cut(s)	178, 513, 773, 873
SduI	GDGCHC	3 cut(s)	231, 559, 697
SfaNI	GCATC	1 cut(s)	802
SinI	GGWCC	1 cut(s)	595
Sse9I	AATT	4 cut(s)	32, 378, 537, 792
SsiI	CCGC	4 cut(s)	74, 207, 518, 622
StyD4I	CCNGG	4 cut(s)	176, 511, 771, 871
TaaI	ACNGT	2 cut(s)	246, 390
TaiI	ACGT	3 cut(s)	153, 254, 678
TaqI	TCGA	2 cut(s)	48, 888
TaqII	GACCGA	2 cut(s)	34, 816
TasI	AATT	4 cut(s)	32, 378, 537, 792
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	254, 473, 764
Tru9I	TTAA	3 cut(s)	254, 473, 764
TscAI	CASTG	1 cut(s)	194
TseFI	GTSAC	2 cut(s)	362, 573
Tsp45I	GTSAC	2 cut(s)	362, 573
TspDTI	ATGAA	4 cut(s)	25, 357, 716, 748
TspRI	CASTG	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	3 cut(s)	32, 537, 792
XceI	RCATGY	2 cut(s)	29, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	248, 825
ZraI	GACGTC	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.