Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

33889383 .. 33894601

Gene Structure 5219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43850.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTGGAGCTGGCAGCTAGCAAACATGTTCAATTCATTCTATCGAAGGCACAGGAAAAGGACTCTTATGAATCAGTTTTGATGGAGCATATAAGATTGAATGGGGCATACTGGGGTTTGACCACTCTTGACCTTTTGGGAAAGCTTGACACTGTTGACGTCAATGAAGTTGTTTCGGAGGTTCTCCAGTGCCAGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCGCACATACTATATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAATGTTGATGTATTGGATATCGAGAAGATTGCAAATTATGTAGCTGGGCTGCAGAATGAAGATGGCTCATTTTCTGGGGACATTTGGGGTGAAGTTGATACGCGGTTTTCATATATTGCCATCTGTTGTCTAGCATTACTACATCGTTTGGATAAAATTAATGTAGAGAAGGCTGTGGACTACATTTTGAGTTGTAAAAATCATGATGGCGGATTTGGATGCACCCCTGGTGGGGAGTCTCATGCAGGTCAAATTTTCTGTTGCGTGGGTGCTCTTGCTATCACAGGATCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTGTGTGAGCGGCAAGTTAAAGCAGGAGGTCTTAATGGCCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCTTGGTGGGTTCTCTCTAGTTTGATCATGATTGACAGAGTTCATTGGATCGATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGTCAGGACATTGAGAATGGAGGAATTTCTGACAGACCAGATGATGCCTGTGATGCCTACCATACATACTTTGGTGTAGCAGGACTTTCCCTTCTTGAATATCCAGGGGTGAAACCCATAGATCCAGCCTATGCTTTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGAGTATAGTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

320

Amino Acids

35.17

Weight (kDa)

4.8

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	4 - 300	4.2e-103	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	2 cut(s)	256, 521
AccBSI	CCGCTC	1 cut(s)	622
AccII	CGCG	1 cut(s)	388
AciI	CCGC	4 cut(s)	236, 388, 495, 622
AclWI	GGATC	3 cut(s)	580, 737, 881
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	537, 789
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	516, 517
AflII	CTTAAG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	32, 100, 863
AjnI	CCWGG	2 cut(s)	511, 868
AluBI	AGCT	6 cut(s)	10, 17, 145, 329, 664, 745
AluI	AGCT	6 cut(s)	10, 17, 145, 329, 664, 745
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	580, 737, 881
AoxI	GGCC	2 cut(s)	273, 649
ApeKI	GCWGC	2 cut(s)	14, 334
ApoI	RAATTY	2 cut(s)	537, 789
AseI	ATTAAT	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	386, 886
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	2 cut(s)	26, 321
BccI	CCATC	5 cut(s)	76, 341, 413, 485, 600
BceAI	ACGGC	1 cut(s)	636
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	513, 870
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	3 cut(s)	18, 416, 699
BfmI	CTRYAG	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	253
BfuAI	ACCTGC	2 cut(s)	256, 521
BisI	GCNGC	3 cut(s)	15, 335, 623
BlsI	GCNGC	3 cut(s)	16, 336, 624
Bme1390I	CCNGG	2 cut(s)	513, 870
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmrFI	CCNGG	2 cut(s)	513, 870
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	3 cut(s)	494, 799, 808
BmtI	GCTAGC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	511, 869
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 517
Bse1I	ACTGG	3 cut(s)	116, 187, 905
BseBI	CCWGG	2 cut(s)	513, 870
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	511, 869
BseGI	GGATG	2 cut(s)	509, 611
BseLI	CCNNNNNNNGG	2 cut(s)	516, 517
BseNI	ACTGG	3 cut(s)	116, 187, 905
BseXI	GCAGC	2 cut(s)	26, 321
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	275, 651
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	516, 517
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	275, 651
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	572, 705, 729, 886
BspACI	CCGC	4 cut(s)	236, 388, 495, 622
BspANI	GGCC	2 cut(s)	275, 651
BspDI	ATCGAT	1 cut(s)	732
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	2 cut(s)	487, 708
BspMAI	CTGCAG	1 cut(s)	339
BspMI	ACCTGC	2 cut(s)	256, 521
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	3 cut(s)	580, 737, 881
BspTI	CTTAAG	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	116, 187, 905
BssECI	CCNNGG	2 cut(s)	511, 869
BssMI	GATC	4 cut(s)	572, 705, 729, 886
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	513, 870
Bst4CI	ACNGT	2 cut(s)	154, 767
BstACI	GRCGYC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	12, 19, 194, 747
BstDEI	CTNAG	1 cut(s)	931
BstF5I	GGATG	2 cut(s)	509, 611
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	575, 708, 732, 889
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	4 cut(s)	572, 705, 729, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstNI	CCWGG	2 cut(s)	513, 870
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	511, 868
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	26, 321
BstX2I	RGATCY	2 cut(s)	572, 886
BstYI	RGATCY	2 cut(s)	572, 886
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	275, 651
BsuTUI	ATCGAT	1 cut(s)	732
BtsCI	GGATG	2 cut(s)	509, 611
BtsIMutI	CAGTG	2 cut(s)	150, 194
BveI	ACCTGC	2 cut(s)	256, 521
Cac8I	GCNNGC	4 cut(s)	12, 19, 194, 747
CciI	TCATGA	2 cut(s)	487, 708
Cfr13I	GGNCC	1 cut(s)	595
ClaI	ATCGAT	1 cut(s)	732
CviAII	CATG	6 cut(s)	26, 197, 230, 488, 527, 709
DdeI	CTNAG	1 cut(s)	931
DpnI	GATC	4 cut(s)	574, 707, 731, 888
DpnII	GATC	4 cut(s)	572, 705, 729, 886
EaeI	YGGCCR	1 cut(s)	649
EciI	GGCGGA	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	595
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	511, 868
EcoRV	GATATC	1 cut(s)	304
FaeI	CATG	6 cut(s)	29, 200, 233, 491, 530, 712
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	6 cut(s)	25, 196, 229, 487, 526, 708
FauI	CCCGC	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	15, 335, 623
FokI	GGATG	2 cut(s)	516, 618
Fsp4HI	GCNGC	3 cut(s)	15, 335, 623
FspBI	CTAG	3 cut(s)	18, 416, 699
GluI	GCNGC	3 cut(s)	15, 335, 623
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	275, 651
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	29, 200, 233, 491, 530, 712
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	3 cut(s)	143, 662, 743
HinfI	GANTC	4 cut(s)	62, 71, 200, 521
HphI	GGTGA	2 cut(s)	386, 886
Hpy166II	GTNNAC	2 cut(s)	157, 463
Hpy188I	TCNGA	2 cut(s)	178, 796
Hpy188III	TCNNGA	8 cut(s)	128, 307, 488, 656, 668, 709, 770, 860
Hpy8I	GTNNAC	2 cut(s)	157, 463
HpyAV	CCTTC	4 cut(s)	40, 448, 608, 866
HpyCH4III	ACNGT	2 cut(s)	154, 767
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	265, 317, 337, 507, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	1 cut(s)	931
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	29, 200, 233, 491, 530, 712
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	4 cut(s)	572, 705, 729, 886
LmnI	GCTCC	2 cut(s)	7, 85
Lsp1109I	GCAGC	2 cut(s)	26, 321
LweI	GCATC	3 cut(s)	494, 799, 808
MaeI	CTAG	3 cut(s)	18, 416, 699
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	4 cut(s)	574, 707, 731, 888
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	4 cut(s)	572, 705, 729, 886
MboII	GAAGA	2 cut(s)	322, 356
MflI	RGATCY	2 cut(s)	572, 886
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	5 cut(s)	32, 319, 441, 537, 789
MlyI	GAGTC	2 cut(s)	56, 530
MnlI	CCTC	3 cut(s)	172, 632, 779
MseI	TTAA	4 cut(s)	254, 444, 630, 645
MspCI	CTTAAG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	513, 870
MvaI	CCWGG	2 cut(s)	513, 870
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	818
NdeII	GATC	4 cut(s)	572, 705, 729, 886
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	6 cut(s)	29, 200, 233, 491, 530, 712
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	2 cut(s)	487, 708
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	71, 200
PkrI	GCNGC	3 cut(s)	16, 336, 624
PleI	GAGTC	2 cut(s)	56, 529
PpsI	GAGTC	2 cut(s)	56, 529
PpuMI	RGGWCCY	1 cut(s)	595
PscI	ACATGT	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	511, 868
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	511, 868
PspPI	GGNCC	1 cut(s)	595
PspPPI	RGGWCCY	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	2 cut(s)	572, 886
SaqAI	TTAA	4 cut(s)	254, 444, 630, 645
SatI	GCNGC	3 cut(s)	15, 335, 623
Sau3AI	GATC	4 cut(s)	572, 705, 729, 886
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	2 cut(s)	56, 530
ScrFI	CCNGG	2 cut(s)	513, 870
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	494, 799, 808
SfcI	CTRYAG	1 cut(s)	335
SinI	GGWCC	1 cut(s)	595
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	5 cut(s)	32, 319, 441, 537, 789
SsiI	CCGC	4 cut(s)	236, 388, 495, 622
SspMI	CTAG	3 cut(s)	18, 416, 699
StyD4I	CCNGG	2 cut(s)	511, 868
TaaI	ACNGT	2 cut(s)	154, 767
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	44, 306, 732
TasI	AATT	5 cut(s)	32, 319, 441, 537, 789
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	2 cut(s)	71, 200
Tru1I	TTAA	4 cut(s)	254, 444, 630, 645
Tru9I	TTAA	4 cut(s)	254, 444, 630, 645
TscAI	CASTG	2 cut(s)	157, 194
TseI	GCWGC	2 cut(s)	14, 334
TspDTI	ATGAA	8 cut(s)	25, 84, 180, 213, 357, 384, 713, 745
TspRI	CASTG	2 cut(s)	157, 194
Vha464I	CTTAAG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	537, 789
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XspI	CTAG	3 cut(s)	18, 416, 699
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.