Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004294.1

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 971

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004294.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 251 bp

ttttctgttgtgtcggagcccttgctatcacagggtctctacatcgtattgacaaggaccttcttggatggtggttatgtgagcggcaagttaaatcaggaggtcttaatggtcgtccagagaagcttcctgatgtgggtgttgcattgtattttattctgtatatctttgacattgaaaatgggggaatttctgatagaccagatgatgcatgtgatgcctaccatacatactttggtgtagccgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

82

Amino Acids

9.04

Weight (kDa)

4.81

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	21
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	198, 207
BsaI	GGTCTC	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	19, 126, 244
CviKI_1	RGCY	3 cut(s)	19, 126, 244
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	78, 164, 213, 227, 231
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	16, 195
Hpy188III	TCNNGA	3 cut(s)	98, 118, 130
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	145, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	17, 83, 131, 143, 215
LweI	GCATC	2 cut(s)	198, 207
MbiI	CCGCTC	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	1 cut(s)	94
Mph1103I	ATGCAT	1 cut(s)	213
MseI	TTAA	2 cut(s)	92, 107
MwoI	GCNNNNNNNGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	57
PspPPI	RGGWCCY	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	92, 107
SatI	GCNGC	1 cut(s)	85
Sau96I	GGNCC	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	62, 105, 128
SfaNI	GCATC	2 cut(s)	198, 207
SinI	GGWCC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	84
TasI	AATT	1 cut(s)	188
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	2 cut(s)	92, 107
Tru9I	TTAA	2 cut(s)	92, 107
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.