Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00269

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

5758 .. 9891

Gene Structure 4134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G007110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTAGTTATGTTTTTGTGATTCAAAAGATGGCTGGTGTTGGTTGGACTAAATTAAGCTTGCTATCCTTAAGGATGAATGGAGCTTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCAATGAGGTCGTTTCAGAGGTCCTGCAGTGCCAGCATGAATCAGGTGGGTTTGGTGGTAACATTGGACATGATCCACACATACTTTGTACCTTAAGTGCTGTGCAGGTTTTGGCCTTACTTGACAAGGTTCATGTTTGGAGGTTGAAAATGTTGCAGATTCAAATTTTGTCTGGCTTAATATTCAACTCAGACGTAGCAGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGAAAGCTGTGGACCATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGATCAAAGTATTTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATGTAGCTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATAATGCATGTGATGCCTACCATACATACTTAGGTGTAGCAGAGAAGAGGCAAAGCAACATATATCCAGGAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

276

Amino Acids

30.85

Weight (kDa)

5.83

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	20 - 137	8.7e-19	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	138 - 264	1.4e-40	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	568
AciI	CCGC	2 cut(s)	438, 568
AclWI	GGATC	3 cut(s)	206, 367, 683
AcsI	RAATTY	2 cut(s)	303, 735
AfaI	GTAC	1 cut(s)	229
AflII	CTTAAG	2 cut(s)	70, 232
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	26, 286, 302, 325, 725
AjnI	CCWGG	3 cut(s)	454, 714, 817
AluBI	AGCT	7 cut(s)	60, 86, 124, 403, 610, 648, 691
AluI	AGCT	7 cut(s)	60, 86, 124, 403, 610, 648, 691
Alw26I	GTCTC	2 cut(s)	471, 526
AlwI	GGATC	3 cut(s)	206, 367, 683
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	2 cut(s)	303, 735
AspS9I	GGNCC	3 cut(s)	160, 408, 541
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	3 cut(s)	160, 408, 541
BanII	GRGCYC	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	330
BccI	CCATC	4 cut(s)	25, 350, 428, 546
BciT130I	CCWGG	3 cut(s)	456, 716, 819
BcoDI	GTCTC	2 cut(s)	471, 526
BfmI	CTRYAG	1 cut(s)	164
BfrI	CTTAAG	2 cut(s)	70, 232
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	344, 569
BlsI	GCNGC	2 cut(s)	345, 570
Bme1390I	CCNGG	3 cut(s)	456, 716, 819
Bme18I	GGWCC	3 cut(s)	160, 408, 541
BmgT120I	GGNCC	3 cut(s)	160, 408, 541
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	3 cut(s)	456, 716, 819
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	437, 754
BmuI	ACTGGG	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	95
BseBI	CCWGG	3 cut(s)	456, 716, 819
BseGI	GGATG	4 cut(s)	81, 142, 452, 557
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	330
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	471, 526
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	254
Bso31I	GGTCTC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	5 cut(s)	109, 211, 359, 475, 675
BspACI	CCGC	2 cut(s)	438, 568
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	341
BspHI	TCATGA	2 cut(s)	430, 654
BspLI	GGNNCC	1 cut(s)	503
BspMAI	CTGCAG	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	3 cut(s)	206, 367, 683
BspTI	CTTAAG	2 cut(s)	70, 232
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	5 cut(s)	109, 211, 359, 475, 675
Bst2UI	CCWGG	3 cut(s)	456, 716, 819
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	791
BstAFI	CTTAAG	2 cut(s)	70, 232
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	4 cut(s)	62, 173, 452, 693
BstDEI	CTNAG	2 cut(s)	328, 781
BstF5I	GGATG	4 cut(s)	81, 142, 452, 557
BstKTI	GATC	5 cut(s)	112, 214, 362, 478, 678
BstMAI	GTCTC	2 cut(s)	471, 526
BstMBI	GATC	5 cut(s)	109, 211, 359, 475, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 764
BstNI	CCWGG	3 cut(s)	456, 716, 819
BstNSI	RCATGY	2 cut(s)	379, 762
BstSCI	CCNGG	3 cut(s)	454, 714, 817
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	81, 142, 452, 557
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	2 cut(s)	129, 173
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	4 cut(s)	62, 173, 452, 693
CciI	TCATGA	2 cut(s)	430, 654
Cfr13I	GGNCC	3 cut(s)	160, 408, 541
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	9 cut(s)	176, 209, 272, 376, 431, 470, 630, 655, 759
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	328, 781
DpnI	GATC	5 cut(s)	111, 213, 361, 477, 677
DpnII	GATC	5 cut(s)	109, 211, 359, 475, 675
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
EciI	GGCGGA	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	3 cut(s)	160, 408, 541
EcoO109I	RGGNCCY	2 cut(s)	160, 541
EcoRII	CCWGG	3 cut(s)	454, 714, 817
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	506
FaeI	CATG	9 cut(s)	179, 212, 275, 379, 434, 473, 633, 658, 762
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	9 cut(s)	175, 208, 271, 375, 430, 469, 629, 654, 758
Fnu4HI	GCNGC	2 cut(s)	344, 569
FokI	GGATG	4 cut(s)	88, 149, 459, 564
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	344, 569
GluI	GCNGC	2 cut(s)	344, 569
HaeIII	GGCC	1 cut(s)	254
Hin1II	CATG	9 cut(s)	179, 212, 275, 379, 434, 473, 633, 658, 762
HindIII	AAGCTT	4 cut(s)	58, 122, 608, 689
HinfI	GANTC	5 cut(s)	22, 103, 179, 298, 464
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	4 cut(s)	157, 331, 501, 742
Hpy188III	TCNNGA	6 cut(s)	107, 431, 582, 602, 614, 655
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	166, 244, 295, 346, 450, 473, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 764
HpyF3I	CTNAG	2 cut(s)	328, 781
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	9 cut(s)	179, 212, 275, 379, 434, 473, 633, 658, 762
Kzo9I	GATC	5 cut(s)	109, 211, 359, 475, 675
LmnI	GCTCC	2 cut(s)	83, 501
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	2 cut(s)	437, 754
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	5 cut(s)	111, 213, 361, 477, 677
MbiI	CCGCTC	1 cut(s)	568
MboI	GATC	5 cut(s)	109, 211, 359, 475, 675
MboII	GAAGA	3 cut(s)	104, 365, 808
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	3 cut(s)	53, 303, 735
MlyI	GAGTC	2 cut(s)	97, 473
MmeI	TCCRAC	2 cut(s)	26, 479
MnlI	CCTC	5 cut(s)	139, 151, 273, 578, 792
Mph1103I	ATGCAT	1 cut(s)	760
MseI	TTAA	8 cut(s)	56, 71, 233, 317, 416, 576, 591, 650
MspCI	CTTAAG	2 cut(s)	70, 232
MspR9I	CCNGG	3 cut(s)	456, 716, 819
MvaI	CCWGG	3 cut(s)	456, 716, 819
MwoI	GCNNNNNNNGC	2 cut(s)	172, 764
NdeII	GATC	5 cut(s)	109, 211, 359, 475, 675
NlaIII	CATG	9 cut(s)	179, 212, 275, 379, 434, 473, 633, 658, 762
NlaIV	GGNNCC	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	760
NspI	RCATGY	2 cut(s)	379, 762
PagI	TCATGA	2 cut(s)	430, 654
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	22, 179, 298
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	2 cut(s)	345, 570
PleI	GAGTC	2 cut(s)	97, 472
PpsI	GAGTC	2 cut(s)	97, 472
PpuMI	RGGWCCY	2 cut(s)	160, 541
PscI	ACATGT	1 cut(s)	375
Psp5II	RGGWCCY	2 cut(s)	160, 541
Psp6I	CCWGG	3 cut(s)	454, 714, 817
PspGI	CCWGG	3 cut(s)	454, 714, 817
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	3 cut(s)	160, 408, 541
PspPPI	RGGWCCY	2 cut(s)	160, 541
PstI	CTGCAG	1 cut(s)	168
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	8 cut(s)	56, 71, 233, 317, 416, 576, 591, 650
SatI	GCNGC	2 cut(s)	344, 569
Sau3AI	GATC	5 cut(s)	109, 211, 359, 475, 675
Sau96I	GGNCC	3 cut(s)	160, 408, 541
SchI	GAGTC	2 cut(s)	97, 473
ScrFI	CCNGG	3 cut(s)	456, 716, 819
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	2 cut(s)	437, 754
SfcI	CTRYAG	1 cut(s)	164
SinI	GGWCC	3 cut(s)	160, 408, 541
SmlI	CTYRAG	2 cut(s)	70, 232
SmoI	CTYRAG	2 cut(s)	70, 232
Sse9I	AATT	3 cut(s)	53, 303, 735
SsiI	CCGC	2 cut(s)	438, 568
SspI	AATATT	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	454, 714, 817
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	336
TasI	AATT	3 cut(s)	53, 303, 735
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	3 cut(s)	22, 179, 298
Tru1I	TTAA	8 cut(s)	56, 71, 233, 317, 416, 576, 591, 650
Tru9I	TTAA	8 cut(s)	56, 71, 233, 317, 416, 576, 591, 650
TscAI	CASTG	2 cut(s)	136, 173
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	6 cut(s)	92, 192, 260, 366, 659, 691
TspRI	CASTG	2 cut(s)	136, 173
Vha464I	CTTAAG	2 cut(s)	70, 232
VpaK11BI	GGWCC	3 cut(s)	160, 408, 541
XapI	RAATTY	2 cut(s)	303, 735
XceI	RCATGY	2 cut(s)	379, 762
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.