Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

35296681 .. 35300732

Gene Structure 4052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1221400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGCATCTAAGAATGAATGGGGCATACTGGGGCTTGACAACTCTGGATCTTCTCGGAAAGATTCAGGTTGTCGATGTCGATGAGATTGTTTACTTCGTACATGTAGGTGGGTTTGGTGGTAACATTGGGCACGATCCACATGTACTATATACCTTAAGCGCTGTGCAGGTCTTGGCCCTGTTTAACAAGATTGATGTTCTGGATGTCGACAAGGTTGCAAGTTATGTTGCTGCACTGCAAAACAAAGATGGATCATTTTCCGGGGACATGTGGGGTGAAATTGATACAAGGTTTTCGTACATTGCTATATTGTGTCTCGCGCTACTACATCGATTGAACAAAATCAATGTGGAGAAGGCCGTGAACTACATTGTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACACCTGGTGCGGAGTCTCATGCAGTTTTCTGTTGTGTGGGTGCTCTTGCTATTACGGGTTCTCTACATCATATTGACAAAGACCTTCTTGGGTGGTGGTTATGTGAGCGGCAAGTTAATTCTGGAGACATTCTTATCAAATCAAAAGCTAAACCTGGAGGCCTTAATGGCCGTCCAGAGAAACTTCCTGATGTCTGCTACTCATGGTGGGTTCTTTCTAGTTTGGTCATGATTGACAGAGTTCATTGGATTGATAAGGAAAAGCTTGTCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGAGGAATTTCGGACAGACCAGACGATGCTGTTGATGTCTACCACACATACTTTGGTGTAGCTGGACTTTCCCTTCTTGAATATCCCGGGATGAAGGCCCTAGATCCAGCTTATGCTTTGCCAGTTGATGTTGCTAATGCAGATATGAGGCTGCAGAAAGCAGAAGGAAATCACATATTGCCAAGCCCACCTCCTCCTCCGCATTCCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

309

Amino Acids

33.85

Weight (kDa)

5.38

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	2 - 277	2e-86	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	210, 753
AccII	CGCG	1 cut(s)	323
AciI	CCGC	4 cut(s)	399, 422, 520, 914
AclWI	GGATC	4 cut(s)	57, 131, 262, 812
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	1 cut(s)	720
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	3 cut(s)	102, 147, 302
AfeI	AGCGCT	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	157
AflIII	ACRYGT	3 cut(s)	103, 142, 270
AgsI	TTSAA	3 cut(s)	340, 710, 794
AjnI	CCWGG	3 cut(s)	415, 565, 699
AluBI	AGCT	4 cut(s)	560, 676, 776, 824
AluI	AGCT	4 cut(s)	560, 676, 776, 824
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	3 cut(s)	323, 432, 531
AlwI	GGATC	4 cut(s)	57, 131, 262, 812
Ama87I	CYCGRG	1 cut(s)	800
Aor51HI	AGCGCT	1 cut(s)	163
AoxI	GGCC	5 cut(s)	177, 360, 571, 580, 810
ApeKI	GCWGC	2 cut(s)	233, 865
ApoI	RAATTY	1 cut(s)	720
AspLEI	GCGC	2 cut(s)	164, 325
AspS9I	GGNCC	2 cut(s)	178, 811
AsuC2I	CCSGG	3 cut(s)	265, 801, 802
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	220, 852
BccI	CCATC	2 cut(s)	245, 389
BceAI	ACGGC	2 cut(s)	347, 567
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	3 cut(s)	417, 567, 701
BcnI	CCSGG	3 cut(s)	265, 801, 802
BcoDI	GTCTC	3 cut(s)	323, 432, 531
BfaI	CTAG	2 cut(s)	630, 815
BfmI	CTRYAG	1 cut(s)	866
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	160
BglI	GCCNNNNNGGC	1 cut(s)	579
BisI	GCNGC	3 cut(s)	234, 521, 866
BlsI	GCNGC	3 cut(s)	235, 522, 867
Bme1390I	CCNGG	6 cut(s)	265, 417, 567, 701, 801, 802
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	2 cut(s)	178, 811
BmrFI	CCNGG	6 cut(s)	265, 417, 567, 701, 801, 802
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	16, 398, 730
BmuI	ACTGGG	1 cut(s)	40
BpmI	CTGGAG	2 cut(s)	555, 588
BpuMI	CCSGG	3 cut(s)	265, 801, 802
Bsa29I	ATCGAT	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	264, 800
Bse1I	ACTGG	2 cut(s)	35, 836
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	417, 567, 701
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	264, 800
BseGI	GGATG	3 cut(s)	211, 413, 810
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	35, 836
BseRI	GAGGAG	2 cut(s)	897, 900
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	220, 852
BsgI	GTGCAG	2 cut(s)	188, 219
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	5 cut(s)	179, 362, 573, 582, 812
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	264, 801
BslFI	GGGAC	1 cut(s)	281
BsmAI	GTCTC	3 cut(s)	323, 432, 531
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	5 cut(s)	179, 362, 573, 582, 812
BsoBI	CYCGRG	1 cut(s)	800
Bsp1286I	GDGCHC	2 cut(s)	135, 457
Bsp143I	GATC	4 cut(s)	49, 136, 254, 817
BspACI	CCGC	4 cut(s)	399, 422, 520, 914
BspANI	GGCC	5 cut(s)	179, 362, 573, 582, 812
BspDI	ATCGAT	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	2 cut(s)	391, 639
BspMAI	CTGCAG	1 cut(s)	870
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	4 cut(s)	57, 131, 262, 812
BspTI	CTTAAG	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	35, 836
BssECI	CCNNGG	2 cut(s)	264, 800
BssMI	GATC	4 cut(s)	49, 136, 254, 817
Bst2UI	CCWGG	3 cut(s)	417, 567, 701
BstAFI	CTTAAG	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	211, 413, 810
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	164, 325
BstKTI	GATC	4 cut(s)	52, 139, 257, 820
BstMAI	GTCTC	3 cut(s)	323, 432, 531
BstMBI	GATC	4 cut(s)	49, 136, 254, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNI	CCWGG	3 cut(s)	417, 567, 701
BstNSI	RCATGY	3 cut(s)	107, 146, 274
BstSCI	CCNGG	6 cut(s)	263, 415, 565, 699, 799, 800
BstSFI	CTRYAG	1 cut(s)	866
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	220, 852
BstX2I	RGATCY	2 cut(s)	49, 817
BstYI	RGATCY	2 cut(s)	49, 817
Bsu15I	ATCGAT	1 cut(s)	334
BsuRI	GGCC	5 cut(s)	179, 362, 573, 582, 812
BsuTUI	ATCGAT	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	211, 413, 810
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	236
BveI	ACCTGC	1 cut(s)	160
CciI	TCATGA	2 cut(s)	391, 639
CfoI	GCGC	2 cut(s)	164, 325
Cfr13I	GGNCC	2 cut(s)	178, 811
Cfr9I	CCCGGG	1 cut(s)	800
ClaI	ATCGAT	1 cut(s)	334
CsiI	ACCWGGT	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	101, 146, 301
CviAII	CATG	7 cut(s)	104, 143, 271, 392, 431, 615, 640
CviQI	GTAC	3 cut(s)	101, 146, 301
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	4 cut(s)	51, 138, 256, 819
DpnII	GATC	4 cut(s)	49, 136, 254, 817
DraIII	CACNNNGTG	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	414
Eco147I	AGGCCT	1 cut(s)	573
Eco47III	AGCGCT	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRII	CCWGG	3 cut(s)	415, 565, 699
FaeI	CATG	7 cut(s)	107, 146, 274, 395, 434, 618, 643
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	7 cut(s)	103, 142, 270, 391, 430, 614, 639
FblI	GTMKAC	2 cut(s)	210, 753
Fnu4HI	GCNGC	3 cut(s)	234, 521, 866
FokI	GGATG	3 cut(s)	218, 420, 817
Fsp4HI	GCNGC	3 cut(s)	234, 521, 866
FspBI	CTAG	2 cut(s)	630, 815
GlaI	GCGC	2 cut(s)	163, 324
GluI	GCNGC	3 cut(s)	234, 521, 866
GsuI	CTGGAG	2 cut(s)	555, 588
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	179, 362, 573, 582, 812
HapII	CCGG	2 cut(s)	264, 801
HhaI	GCGC	2 cut(s)	164, 325
Hin1II	CATG	7 cut(s)	107, 146, 274, 395, 434, 618, 643
Hin6I	GCGC	2 cut(s)	162, 323
HinP1I	GCGC	2 cut(s)	162, 323
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	2 cut(s)	64, 425
HpaII	CCGG	2 cut(s)	264, 801
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	94, 211, 367, 754
Hpy188I	TCNGA	3 cut(s)	59, 727, 922
Hpy188III	TCNNGA	8 cut(s)	47, 203, 392, 534, 587, 599, 640, 791
Hpy8I	GTNNAC	4 cut(s)	94, 211, 367, 754
HpyAV	CCTTC	5 cut(s)	352, 506, 797, 802, 872
HpyCH4V	TGCA	8 cut(s)	169, 221, 236, 241, 411, 434, 854, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	7 cut(s)	107, 146, 274, 395, 434, 618, 643
HspAI	GCGC	2 cut(s)	162, 323
Kzo9I	GATC	4 cut(s)	49, 136, 254, 817
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	220, 852
LweI	GCATC	3 cut(s)	16, 398, 730
MabI	ACCWGGT	1 cut(s)	415
MaeI	CTAG	2 cut(s)	630, 815
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	4 cut(s)	51, 138, 256, 819
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	4 cut(s)	49, 136, 254, 817
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	2 cut(s)	49, 817
MhlI	GDGCHC	2 cut(s)	135, 457
MluCI	AATT	3 cut(s)	282, 529, 720
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	6 cut(s)	563, 710, 855, 915, 918, 921
MseI	TTAA	4 cut(s)	158, 186, 528, 576
MslI	CAYNNNNRTG	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	157
MspI	CCGG	2 cut(s)	264, 801
MspR9I	CCNGG	6 cut(s)	265, 417, 567, 701, 801, 802
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	3 cut(s)	417, 567, 701
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	579
NciI	CCSGG	3 cut(s)	265, 801, 802
NdeII	GATC	4 cut(s)	49, 136, 254, 817
NlaIII	CATG	7 cut(s)	107, 146, 274, 395, 434, 618, 643
NspI	RCATGY	3 cut(s)	107, 146, 274
PagI	TCATGA	2 cut(s)	391, 639
PceI	AGGCCT	1 cut(s)	573
PciI	ACATGT	3 cut(s)	103, 142, 270
PctI	GAATGC	1 cut(s)	916
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	235, 522, 867
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
PscI	ACATGT	3 cut(s)	103, 142, 270
Psp6I	CCWGG	3 cut(s)	415, 565, 699
PspGI	CCWGG	3 cut(s)	415, 565, 699
PspPI	GGNCC	2 cut(s)	178, 811
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	2 cut(s)	49, 817
RsaI	GTAC	3 cut(s)	102, 147, 302
RsaNI	GTAC	3 cut(s)	101, 146, 301
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	4 cut(s)	158, 186, 528, 576
SatI	GCNGC	3 cut(s)	234, 521, 866
Sau3AI	GATC	4 cut(s)	49, 136, 254, 817
Sau96I	GGNCC	2 cut(s)	178, 811
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	6 cut(s)	265, 417, 567, 701, 801, 802
SduI	GDGCHC	2 cut(s)	135, 457
SexAI	ACCWGGT	1 cut(s)	415
SfaNI	GCATC	3 cut(s)	16, 398, 730
SfcI	CTRYAG	1 cut(s)	866
SfiI	GGCCNNNNNGGCC	1 cut(s)	579
SmaI	CCCGGG	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	3 cut(s)	282, 529, 720
SseBI	AGGCCT	1 cut(s)	573
SsiI	CCGC	4 cut(s)	399, 422, 520, 914
SspMI	CTAG	2 cut(s)	630, 815
StuI	AGGCCT	1 cut(s)	573
StyD4I	CCNGG	6 cut(s)	263, 415, 565, 699, 799, 800
TaqI	TCGA	4 cut(s)	75, 81, 210, 334
TasI	AATT	3 cut(s)	282, 529, 720
TatI	WGTACW	1 cut(s)	145
TauI	GCSGC	1 cut(s)	523
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	4 cut(s)	158, 186, 528, 576
Tru9I	TTAA	4 cut(s)	158, 186, 528, 576
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	233, 865
TspDTI	ATGAA	4 cut(s)	32, 644, 676, 821
TspMI	CCCGGG	1 cut(s)	800
TspRI	CASTG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	720
XceI	RCATGY	3 cut(s)	107, 146, 274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmaI	CCCGGG	1 cut(s)	800
XmiI	GTMKAC	2 cut(s)	210, 753
XspI	CTAG	2 cut(s)	630, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.