Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001408.1

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

89170 .. 90598

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001408.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgatggcggatttggatgcacgcctggtggggagtctcatgcaggtcaaattttctgttgtgtgggagcccttgctatcacagggtctctacatcgtattgacaaggaccttcttggatggtggttatgcgagcggcaagttaaatcaggtgtgctactcatggtgggttctatctagtttaatcatgattgacagggttcattggatcgataagcaaaagcttgccaagttcattttagactgccaggacactgaaaatgggggaatttctgatagaccagatgatgcatgtgatgcctaccatacatactttggtgttgcaggactttccttgcttgaatatcctggggtgaaagccatagatccagcttatgctttgccagttgatgttgtaaataggattatcttaggcataaagggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

141

Amino Acids

15.67

Weight (kDa)

4.96

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	2 cut(s)	8, 135
AclWI	GGATC	2 cut(s)	215, 359
AcsI	RAATTY	2 cut(s)	50, 267
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	24, 246, 346
AluBI	AGCT	2 cut(s)	223, 371
AluI	AGCT	2 cut(s)	223, 371
Alw26I	GTCTC	2 cut(s)	41, 92
AlwI	GGATC	2 cut(s)	215, 359
ApoI	RAATTY	2 cut(s)	50, 267
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	72
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	26, 248, 348
BcoDI	GTCTC	2 cut(s)	41, 92
BfaI	CTAG	1 cut(s)	177
BfuAI	ACCTGC	1 cut(s)	34
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	3 cut(s)	26, 248, 348
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	26, 248, 348
BmsI	GCATC	3 cut(s)	7, 277, 286
Bsa29I	ATCGAT	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	3 cut(s)	26, 248, 348
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	22, 124
BseNI	ACTGG	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	41, 92
Bso31I	GGTCTC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	207, 364
BspACI	CCGC	2 cut(s)	8, 135
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	215, 359
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	2 cut(s)	207, 364
Bst2UI	CCWGG	3 cut(s)	26, 248, 348
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	22, 133, 225
BstDEI	CTNAG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	22, 124
BstKTI	GATC	2 cut(s)	210, 367
BstMAI	GTCTC	2 cut(s)	41, 92
BstMBI	GATC	2 cut(s)	207, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	3 cut(s)	26, 248, 348
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	3 cut(s)	24, 246, 346
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	22, 124
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	34
Cac8I	GCNNGC	3 cut(s)	22, 133, 225
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	210
CviAII	CATG	4 cut(s)	40, 162, 187, 291
CviJI	RGCY	4 cut(s)	70, 223, 359, 371
CviKI_1	RGCY	4 cut(s)	70, 223, 359, 371
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	2 cut(s)	209, 366
DpnII	GATC	2 cut(s)	207, 364
EciI	GGCGGA	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	3 cut(s)	24, 246, 346
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	4 cut(s)	43, 165, 190, 294
FatI	CATG	4 cut(s)	39, 161, 186, 290
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	29, 131
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	43, 165, 190, 294
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	20, 43, 290, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	4 cut(s)	43, 165, 190, 294
Kzo9I	GATC	2 cut(s)	207, 364
LmnI	GCTCC	1 cut(s)	67
LweI	GCATC	3 cut(s)	7, 277, 286
MaeI	CTAG	1 cut(s)	177
MalI	GATC	2 cut(s)	209, 366
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	207, 364
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	50, 267
MlyI	GAGTC	1 cut(s)	43
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	2 cut(s)	143, 182
MspR9I	CCNGG	3 cut(s)	26, 248, 348
MvaI	CCWGG	3 cut(s)	26, 248, 348
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	207, 364
NlaIII	CATG	4 cut(s)	43, 165, 190, 294
NlaIV	GGNNCC	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	292
NspI	RCATGY	1 cut(s)	294
PagI	TCATGA	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	3 cut(s)	24, 246, 346
PspGI	CCWGG	3 cut(s)	24, 246, 346
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	108
PspPPI	RGGWCCY	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	364
SaqAI	TTAA	2 cut(s)	143, 182
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	2 cut(s)	207, 364
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	26, 248, 348
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	5 cut(s)	48, 113, 153, 225, 373
SfaNI	GCATC	3 cut(s)	7, 277, 286
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	2 cut(s)	50, 267
SsiI	CCGC	2 cut(s)	8, 135
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	24, 246, 346
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	50, 267
TauI	GCSGC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	143, 182
Tru9I	TTAA	2 cut(s)	143, 182
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	191, 223
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	2 cut(s)	50, 267
XceI	RCATGY	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.