Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

11524485 .. 11528463

Gene Structure 3979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGTTCACTTGATCTGAATATTTATGGTTCACATTTGCCTGATATTATGGCAGAGCTGGCTGCTCGGAAACATGTTCAATTCATTCTATCGAAAGCAAAGGAAAAGGATTCTTATGAATCAGTTCTGATGGAGCATATAAGATTGAATGGGGCATATTGGGGTTTGACCACTCTTGATCTTCTTGGAAAGCTTGATACTGTCGATGTCAATGAAGTTGTTTCAGAGGTCCTCCAGTGCCAGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCACACATACTTTATACCTTAAGTGCCGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATACCGAAAAGGTTGCAAATTATGTAGCTGGGCTGCAAAATGAAGATGGCTCTTTTGCAGGGGACATGTGGGGTGAAGTTGATACGCGGTTTTCGTATATTGCTATCTGTTGTCTAGCATTACTACATCGTTTGGATAAAATTAATGTGGAGAAGGCTGTATACTACATATTAAGTTGTAAAAATCACGATGGCGGATTTGGATGCACGCCTGGTGGAGAGTCTCATGCTGGTCAAATTTTTTGTTGTGTGGGTGCTCTAGCTATCACGGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTGAAAGCAGGAGGTCTTAATGGGCGTCCTGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTGATCATGATTGACAGAGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGTCAGGACATTGAAAATGGAGGAATTTCAGACAGACCAGATGATGCATGTGATGCCTATCATACATACTTTGGTGTAGCAGGGCTTTCCCTCCTTGAGTATCCAGGGGTGAAACCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGGATTGTCTTGGGCATAAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

331

Amino Acids

36.5

Weight (kDa)

5.06

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	20 - 316	2.5e-102	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	1 cut(s)	436
AciI	CCGC	3 cut(s)	436, 543, 670
AclWI	GGATC	2 cut(s)	785, 929
AcsI	RAATTY	2 cut(s)	585, 837
AcyI	GRCGYC	1 cut(s)	700
AflII	CTTAAG	1 cut(s)	301
AflIII	ACRYGT	2 cut(s)	73, 414
AgsI	TTSAA	3 cut(s)	80, 148, 827
AjnI	CCWGG	2 cut(s)	559, 916
AluBI	AGCT	7 cut(s)	58, 193, 377, 611, 712, 793, 941
AluI	AGCT	7 cut(s)	58, 193, 377, 611, 712, 793, 941
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	576, 627
AlwI	GGATC	2 cut(s)	785, 929
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	2 cut(s)	62, 382
ApoI	RAATTY	2 cut(s)	585, 837
AseI	ATTAAT	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	229, 643
AsuHPI	GGTGA	2 cut(s)	434, 934
AvaII	GGWCC	2 cut(s)	229, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	494, 526
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	2 cut(s)	49, 369
BccI	CCATC	4 cut(s)	124, 389, 533, 648
BceAI	ACGGC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	2 cut(s)	561, 918
BciVI	GTATCC	2 cut(s)	343, 924
BclI	TGATCA	1 cut(s)	753
BcoDI	GTCTC	2 cut(s)	576, 627
BfaI	CTAG	3 cut(s)	464, 608, 747
BfrI	CTTAAG	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	2 cut(s)	343, 924
BisI	GCNGC	3 cut(s)	63, 383, 671
BlsI	GCNGC	3 cut(s)	64, 384, 672
Bme1390I	CCNGG	2 cut(s)	561, 918
Bme18I	GGWCC	2 cut(s)	229, 643
BmgT120I	GGNCC	2 cut(s)	229, 643
BmrFI	CCNGG	2 cut(s)	561, 918
BmsI	GCATC	3 cut(s)	542, 847, 856
BpmI	CTGGAG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	700
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	917
Bse1I	ACTGG	2 cut(s)	235, 953
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	561, 918
BseDI	CCNNGG	1 cut(s)	917
BseGI	GGATG	2 cut(s)	557, 659
BseJI	GATNNNNATC	1 cut(s)	870
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	2 cut(s)	235, 953
BseXI	GCAGC	2 cut(s)	49, 369
BseYI	CCCAGC	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	425
BsmAI	GTCTC	2 cut(s)	576, 627
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	5 cut(s)	13, 178, 753, 777, 934
BspACI	CCGC	3 cut(s)	436, 543, 670
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	756
BspMI	ACCTGC	1 cut(s)	304
BspPI	GGATC	2 cut(s)	785, 929
BspTI	CTTAAG	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	627
BsrBI	CCGCTC	1 cut(s)	670
BsrI	ACTGG	2 cut(s)	235, 953
BssECI	CCNNGG	1 cut(s)	917
BssMI	GATC	5 cut(s)	13, 178, 753, 777, 934
BssNAI	GTATAC	1 cut(s)	511
BssNI	GRCGYC	1 cut(s)	700
Bst1107I	GTATAC	1 cut(s)	511
Bst2UI	CCWGG	2 cut(s)	561, 918
Bst4CI	ACNGT	2 cut(s)	202, 815
BstACI	GRCGYC	1 cut(s)	700
BstAFI	CTTAAG	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	4 cut(s)	60, 242, 557, 795
BstDEI	CTNAG	1 cut(s)	705
BstF5I	GGATG	2 cut(s)	557, 659
BstFNI	CGCG	1 cut(s)	436
BstKTI	GATC	5 cut(s)	16, 181, 756, 780, 937
BstMAI	GTCTC	2 cut(s)	576, 627
BstMBI	GATC	5 cut(s)	13, 178, 753, 777, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 866
BstNI	CCWGG	2 cut(s)	561, 918
BstNSI	RCATGY	3 cut(s)	77, 418, 864
BstSCI	CCNGG	2 cut(s)	559, 916
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	49, 369
BstX2I	RGATCY	1 cut(s)	934
BstYI	RGATCY	1 cut(s)	934
BstZ17I	GTATAC	1 cut(s)	511
BsuI	GTATCC	2 cut(s)	343, 924
BsuRI	GGCC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	557, 659
BtsIMutI	CAGTG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	60, 242, 557, 795
CciI	TCATGA	1 cut(s)	756
Cfr13I	GGNCC	2 cut(s)	229, 643
CseI	GACGC	1 cut(s)	689
CviAII	CATG	8 cut(s)	74, 245, 278, 415, 575, 732, 757, 861
DdeI	CTNAG	1 cut(s)	705
DpnI	GATC	5 cut(s)	15, 180, 755, 779, 936
DpnII	GATC	5 cut(s)	13, 178, 753, 777, 934
EciI	GGCGGA	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	627
Eco47I	GGWCC	2 cut(s)	229, 643
EcoO109I	RGGNCCY	2 cut(s)	229, 643
EcoRII	CCWGG	2 cut(s)	559, 916
EcoT22I	ATGCAT	1 cut(s)	862
FaeI	CATG	8 cut(s)	77, 248, 281, 418, 578, 735, 760, 864
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	8 cut(s)	73, 244, 277, 414, 574, 731, 756, 860
FbaI	TGATCA	1 cut(s)	753
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	3 cut(s)	63, 383, 671
FokI	GGATG	2 cut(s)	564, 666
Fsp4HI	GCNGC	3 cut(s)	63, 383, 671
FspBI	CTAG	3 cut(s)	464, 608, 747
GluI	GCNGC	3 cut(s)	63, 383, 671
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	323
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	8 cut(s)	77, 248, 281, 418, 578, 735, 760, 864
HindIII	AAGCTT	3 cut(s)	191, 710, 791
HinfI	GANTC	4 cut(s)	110, 119, 248, 569
HphI	GGTGA	2 cut(s)	434, 934
Hpy166II	GTNNAC	3 cut(s)	8, 32, 511
Hpy188I	TCNGA	5 cut(s)	18, 69, 129, 226, 844
Hpy188III	TCNNGA	6 cut(s)	176, 536, 704, 716, 757, 818
Hpy8I	GTNNAC	3 cut(s)	8, 32, 511
HpyAV	CCTTC	2 cut(s)	496, 656
HpyCH4III	ACNGT	2 cut(s)	202, 815
HpyCH4V	TGCA	6 cut(s)	313, 365, 385, 407, 555, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 866
HpyF3I	CTNAG	1 cut(s)	705
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	8 cut(s)	77, 248, 281, 418, 578, 735, 760, 864
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	5 cut(s)	13, 178, 753, 777, 934
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	2 cut(s)	49, 369
LweI	GCATC	3 cut(s)	542, 847, 856
MaeI	CTAG	3 cut(s)	464, 608, 747
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	5 cut(s)	15, 180, 755, 779, 936
MbiI	CCGCTC	1 cut(s)	670
MboI	GATC	5 cut(s)	13, 178, 753, 777, 934
MboII	GAAGA	2 cut(s)	173, 404
MflI	RGATCY	1 cut(s)	934
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	5 cut(s)	80, 367, 489, 585, 837
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	5 cut(s)	220, 242, 680, 827, 914
Mph1103I	ATGCAT	1 cut(s)	862
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	4 cut(s)	302, 492, 521, 693
MspCI	CTTAAG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	561, 918
MvaI	CCWGG	2 cut(s)	561, 918
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	2 cut(s)	59, 866
NdeII	GATC	5 cut(s)	13, 178, 753, 777, 934
NlaIII	CATG	8 cut(s)	77, 248, 281, 418, 578, 735, 760, 864
NsiI	ATGCAT	1 cut(s)	862
NspI	RCATGY	3 cut(s)	77, 418, 864
PagI	TCATGA	1 cut(s)	756
PciI	ACATGT	2 cut(s)	73, 414
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	110, 119, 248
PkrI	GCNGC	3 cut(s)	64, 384, 672
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PpuMI	RGGWCCY	2 cut(s)	229, 643
PscI	ACATGT	2 cut(s)	73, 414
PshBI	ATTAAT	1 cut(s)	492
Psp5II	RGGWCCY	2 cut(s)	229, 643
Psp6I	CCWGG	2 cut(s)	559, 916
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	559, 916
PspPI	GGNCC	2 cut(s)	229, 643
PspPPI	RGGWCCY	2 cut(s)	229, 643
PsuI	RGATCY	1 cut(s)	934
SaqAI	TTAA	4 cut(s)	302, 492, 521, 693
SatI	GCNGC	3 cut(s)	63, 383, 671
Sau3AI	GATC	5 cut(s)	13, 178, 753, 777, 934
Sau96I	GGNCC	2 cut(s)	229, 643
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	561, 918
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	3 cut(s)	542, 847, 856
SinI	GGWCC	2 cut(s)	229, 643
SmlI	CTYRAG	2 cut(s)	301, 908
SmoI	CTYRAG	2 cut(s)	301, 908
Sse9I	AATT	5 cut(s)	80, 367, 489, 585, 837
SsiI	CCGC	3 cut(s)	436, 543, 670
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	3 cut(s)	464, 608, 747
StyD4I	CCNGG	2 cut(s)	559, 916
TaaI	ACNGT	2 cut(s)	202, 815
TaqI	TCGA	2 cut(s)	92, 204
TasI	AATT	5 cut(s)	80, 367, 489, 585, 837
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	3 cut(s)	110, 119, 248
Tru1I	TTAA	4 cut(s)	302, 492, 521, 693
Tru9I	TTAA	4 cut(s)	302, 492, 521, 693
TscAI	CASTG	1 cut(s)	242
TseI	GCWGC	2 cut(s)	62, 382
TspDTI	ATGAA	7 cut(s)	73, 132, 228, 261, 405, 761, 793
TspRI	CASTG	1 cut(s)	242
Vha464I	CTTAAG	1 cut(s)	301
VpaK11BI	GGWCC	2 cut(s)	229, 643
VspI	ATTAAT	1 cut(s)	492
XapI	RAATTY	2 cut(s)	585, 837
XceI	RCATGY	3 cut(s)	77, 418, 864
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	3 cut(s)	464, 608, 747
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.