Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

52575042 .. 52579417

Gene Structure 4376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG385000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAACGTGGATGATTATACCGCCGCTGACGATGACCTTTGCAACGCGCTGTGGAGGCCTGTGTTATCTCAGCCACCAGATAAGGAGAAGGACTCTTATGAGTCAGTTTTGATGGAGCATATAAGAATGAATGGAGCTTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCAATGAGGTCGTTTCAGAGGTCATGCAGTGCCAGCATGAATCAGGTGGGTTTGGTGGTAACATTGGACATGATCCACACATACTTTGTACCTTAAGTGCTGTGCAGGTTTTGGCCTTACTTGACAAGGTTGATGTTTGGATGTTGAAAAGGTTGCAGATTGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGGTTTTCTTATATTGCTATCTGCTGTCTCGCATTACTACATCTTTCGGATAAAATCAATGTGGAGAAAGCTGTGGACCATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGATCAAATTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTAGGTGTAGCAGATTATTGCGTTAGGAGTAAAATCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

297

Amino Acids

33.44

Weight (kDa)

5.7

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	35 - 288	5e-69	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	640
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	21, 24, 513, 640
AclWI	GGATC	3 cut(s)	257, 378, 755
AcsI	RAATTY	2 cut(s)	555, 807
AfaI	GTAC	1 cut(s)	280
AflII	CTTAAG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	337, 797
AjnI	CCWGG	2 cut(s)	529, 786
AluBI	AGCT	5 cut(s)	137, 175, 478, 682, 763
AluI	AGCT	5 cut(s)	137, 175, 478, 682, 763
Alw26I	GTCTC	3 cut(s)	439, 546, 597
AlwI	GGATC	3 cut(s)	257, 378, 755
AoxI	GGCC	2 cut(s)	56, 303
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	2 cut(s)	555, 807
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	483, 613
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	483, 613
BanII	GRGCYC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	4 cut(s)	106, 361, 503, 618
BciT130I	CCWGG	2 cut(s)	531, 788
BcoDI	GTCTC	3 cut(s)	439, 546, 597
BfaI	CTAG	1 cut(s)	717
BfrI	CTTAAG	1 cut(s)	283
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	24, 355, 641
BlsI	GCNGC	3 cut(s)	25, 356, 642
Bme1390I	CCNGG	2 cut(s)	531, 788
Bme18I	GGWCC	2 cut(s)	483, 613
BmgT120I	GGNCC	2 cut(s)	483, 613
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	2 cut(s)	531, 788
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	3 cut(s)	512, 817, 826
BmuI	ACTGGG	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BsaI	GGTCTC	1 cut(s)	597
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	531, 788
BseGI	GGATG	5 cut(s)	16, 193, 336, 527, 629
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	58, 305
BslFI	GGGAC	1 cut(s)	397
BsmAI	GTCTC	3 cut(s)	439, 546, 597
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	58, 305
Bso31I	GGTCTC	1 cut(s)	597
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	5 cut(s)	160, 262, 370, 550, 747
BspACI	CCGC	4 cut(s)	21, 24, 513, 640
BspANI	GGCC	2 cut(s)	58, 305
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	2 cut(s)	505, 726
BspLI	GGNNCC	1 cut(s)	574
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	3 cut(s)	257, 378, 755
BspTI	CTTAAG	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	597
BsrBI	CCGCTC	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	146
BssMI	GATC	5 cut(s)	160, 262, 370, 550, 747
Bst2UI	CCWGG	2 cut(s)	531, 788
Bst4CI	ACNGT	2 cut(s)	184, 410
BstAFI	CTTAAG	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	3 cut(s)	224, 527, 765
BstDEI	CTNAG	2 cut(s)	69, 853
BstF5I	GGATG	5 cut(s)	16, 193, 336, 527, 629
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	5 cut(s)	163, 265, 373, 553, 750
BstMAI	GTCTC	3 cut(s)	439, 546, 597
BstMBI	GATC	5 cut(s)	160, 262, 370, 550, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 223, 836
BstNI	CCWGG	2 cut(s)	531, 788
BstNSI	RCATGY	2 cut(s)	390, 834
BstSCI	CCNGG	2 cut(s)	529, 786
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	58, 305
BtsCI	GGATG	5 cut(s)	16, 193, 336, 527, 629
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	180, 224
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	224, 527, 765
CciI	TCATGA	2 cut(s)	505, 726
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	483, 613
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	9 cut(s)	214, 227, 260, 387, 506, 545, 702, 727, 831
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	69, 853
DpnI	GATC	5 cut(s)	162, 264, 372, 552, 749
DpnII	GATC	5 cut(s)	160, 262, 370, 550, 747
EciI	GGCGGA	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	483, 613
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	529, 786
EcoT22I	ATGCAT	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	577
FaeI	CATG	9 cut(s)	217, 230, 263, 390, 509, 548, 705, 730, 834
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	9 cut(s)	213, 226, 259, 386, 505, 544, 701, 726, 830
Fnu4HI	GCNGC	3 cut(s)	24, 355, 641
FokI	GGATG	5 cut(s)	23, 200, 343, 534, 636
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	24, 355, 641
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	3 cut(s)	24, 355, 641
HaeIII	GGCC	2 cut(s)	58, 305
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	9 cut(s)	217, 230, 263, 390, 509, 548, 705, 730, 834
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	3 cut(s)	173, 680, 761
HinfI	GANTC	5 cut(s)	92, 101, 154, 230, 539
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	483
Hpy188I	TCNGA	4 cut(s)	208, 456, 572, 814
Hpy188III	TCNNGA	6 cut(s)	158, 506, 654, 674, 686, 727
Hpy8I	GTNNAC	1 cut(s)	483
HpyAV	CCTTC	2 cut(s)	82, 626
HpyCH4III	ACNGT	2 cut(s)	184, 410
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	8 cut(s)	42, 217, 295, 346, 357, 525, 548, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 223, 836
HpyF3I	CTNAG	2 cut(s)	69, 853
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	9 cut(s)	217, 230, 263, 390, 509, 548, 705, 730, 834
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	5 cut(s)	160, 262, 370, 550, 747
LmnI	GCTCC	3 cut(s)	115, 134, 572
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	3 cut(s)	512, 817, 826
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	5 cut(s)	162, 264, 372, 552, 749
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	5 cut(s)	160, 262, 370, 550, 747
MboII	GAAGA	2 cut(s)	155, 376
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	2 cut(s)	555, 807
MlyI	GAGTC	4 cut(s)	86, 110, 148, 548
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	4 cut(s)	48, 190, 202, 650
Mph1103I	ATGCAT	1 cut(s)	832
MseI	TTAA	5 cut(s)	284, 491, 648, 663, 722
MspA1I	CMGCKG	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	531, 788
MvaI	CCWGG	2 cut(s)	531, 788
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	55, 223, 836
NdeII	GATC	5 cut(s)	160, 262, 370, 550, 747
NlaIII	CATG	9 cut(s)	217, 230, 263, 390, 509, 548, 705, 730, 834
NlaIV	GGNNCC	1 cut(s)	574
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	2 cut(s)	390, 834
PagI	TCATGA	2 cut(s)	505, 726
PceI	AGGCCT	1 cut(s)	58
PciI	ACATGT	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	25, 356, 642
PleI	GAGTC	4 cut(s)	86, 109, 148, 547
PpsI	GAGTC	4 cut(s)	86, 109, 148, 547
PpuMI	RGGWCCY	1 cut(s)	613
PscI	ACATGT	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	2 cut(s)	529, 786
PspGI	CCWGG	2 cut(s)	529, 786
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	2 cut(s)	483, 613
PspPPI	RGGWCCY	1 cut(s)	613
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	5 cut(s)	284, 491, 648, 663, 722
SatI	GCNGC	3 cut(s)	24, 355, 641
Sau3AI	GATC	5 cut(s)	160, 262, 370, 550, 747
Sau96I	GGNCC	2 cut(s)	483, 613
SchI	GAGTC	4 cut(s)	86, 110, 148, 548
ScrFI	CCNGG	2 cut(s)	531, 788
SduI	GDGCHC	1 cut(s)	577
SfaNI	GCATC	3 cut(s)	512, 817, 826
SinI	GGWCC	2 cut(s)	483, 613
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	555, 807
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	4 cut(s)	21, 24, 513, 640
SspMI	CTAG	1 cut(s)	717
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	529, 786
TaaI	ACNGT	2 cut(s)	184, 410
TaiI	ACGT	1 cut(s)	9
TasI	AATT	2 cut(s)	555, 807
TauI	GCSGC	2 cut(s)	26, 643
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	5 cut(s)	284, 491, 648, 663, 722
Tru9I	TTAA	5 cut(s)	284, 491, 648, 663, 722
TscAI	CASTG	2 cut(s)	187, 224
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	6 cut(s)	17, 143, 243, 377, 731, 763
TspRI	CASTG	2 cut(s)	187, 224
Vha464I	CTTAAG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	483, 613
XapI	RAATTY	2 cut(s)	555, 807
XceI	RCATGY	2 cut(s)	390, 834
XspI	CTAG	1 cut(s)	717
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.