Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

47089030 .. 47091732

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGGGAGCCGGCATCTCAGAAACATGAGAAGGACTCTTATGAGTCAGTTCTGATGGAGCATATAAGAATGAATGGAGATTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCAATGAGGTTGTTTCAGAGGTCCTGCAGTGCCAGCATGAGTCAGGTGGGTTTGGTGGTAACATTGGACATGATCCACACATACTTTGTACCTTAAGTGATGTGCAGGTTTTGGCCTTACTTGACAAGGTTGATGTTTTGGATGTTGAAAAGGTTGCAGATTACGTAGCAGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGAAAGCTGTGGACCATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGATCAAATTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTGAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAAGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTAGCCGTATTGATGGGTGTTGACGCAGGACTTTCCTTACTTGAATATCCTGGGGTGAAGGCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

291

Amino Acids

31.88

Weight (kDa)

4.63

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	15 - 276	2.3e-74	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	529
AciI	CCGC	2 cut(s)	402, 529
AclWI	GGATC	4 cut(s)	200, 331, 644, 809
AcsI	RAATTY	2 cut(s)	444, 696
AfaI	GTAC	1 cut(s)	223
AflII	CTTAAG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	3 cut(s)	281, 686, 791
AjnI	CCWGG	3 cut(s)	418, 675, 796
AluBI	AGCT	5 cut(s)	118, 367, 571, 652, 821
AluI	AGCT	5 cut(s)	118, 367, 571, 652, 821
Alw26I	GTCTC	2 cut(s)	435, 486
AlwI	GGATC	4 cut(s)	200, 331, 644, 809
AoxI	GGCC	2 cut(s)	246, 807
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	444, 696
AspS9I	GGNCC	3 cut(s)	154, 372, 502
AsuHPI	GGTGA	2 cut(s)	359, 814
AvaII	GGWCC	3 cut(s)	154, 372, 502
BanII	GRGCYC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	5 cut(s)	49, 314, 392, 507, 754
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	3 cut(s)	420, 677, 798
BcoDI	GTCTC	2 cut(s)	435, 486
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	2 cut(s)	308, 530
BlsI	GCNGC	2 cut(s)	309, 531
Bme1390I	CCNGG	3 cut(s)	420, 677, 798
Bme18I	GGWCC	3 cut(s)	154, 372, 502
BmgT120I	GGNCC	3 cut(s)	154, 372, 502
BmiI	GGNNCC	2 cut(s)	9, 463
BmrFI	CCNGG	3 cut(s)	420, 677, 798
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	4 cut(s)	23, 401, 706, 715
BmuI	ACTGGG	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BsaAI	YACGTR	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	797
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	89, 833
BseBI	CCWGG	3 cut(s)	420, 677, 798
BseDI	CCNNGG	1 cut(s)	797
BseGI	GGATG	4 cut(s)	136, 280, 416, 518
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	89, 833
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	248, 809
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	435, 486
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	248, 809
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
BspACI	CCGC	2 cut(s)	402, 529
BspANI	GGCC	2 cut(s)	248, 809
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	2 cut(s)	394, 615
BspLI	GGNNCC	2 cut(s)	9, 463
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	4 cut(s)	200, 331, 644, 809
BspTI	CTTAAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	486
BsrBI	CCGCTC	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	89, 833
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	797
BssMI	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
Bst2UI	CCWGG	3 cut(s)	420, 677, 798
Bst4CI	ACNGT	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	12, 167, 416, 654
BstDEI	CTNAG	2 cut(s)	18, 859
BstF5I	GGATG	4 cut(s)	136, 280, 416, 518
BstKTI	GATC	6 cut(s)	106, 208, 326, 442, 639, 817
BstMAI	GTCTC	2 cut(s)	435, 486
BstMBI	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 725
BstNI	CCWGG	3 cut(s)	420, 677, 798
BstNSI	RCATGY	2 cut(s)	343, 723
BstSCI	CCNGG	3 cut(s)	418, 675, 796
BstSFI	CTRYAG	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	248, 809
BtsCI	GGATG	4 cut(s)	136, 280, 416, 518
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	123, 167
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	4 cut(s)	12, 167, 416, 654
CciI	TCATGA	2 cut(s)	394, 615
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	154, 372, 502
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	9 cut(s)	26, 170, 203, 340, 395, 434, 591, 616, 720
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	18, 859
DpnI	GATC	6 cut(s)	105, 207, 325, 441, 638, 816
DpnII	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
EciI	GGCGGA	1 cut(s)	417
Eco105I	TACGTA	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	3 cut(s)	154, 372, 502
EcoO109I	RGGNCCY	2 cut(s)	154, 502
EcoRII	CCWGG	3 cut(s)	418, 675, 796
EcoT22I	ATGCAT	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	466
FaeI	CATG	9 cut(s)	29, 173, 206, 343, 398, 437, 594, 619, 723
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	9 cut(s)	25, 169, 202, 339, 394, 433, 590, 615, 719
Fnu4HI	GCNGC	2 cut(s)	308, 530
FokI	GGATG	4 cut(s)	143, 287, 423, 525
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	2 cut(s)	308, 530
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	2 cut(s)	308, 530
HaeIII	GGCC	2 cut(s)	248, 809
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	779
Hin1II	CATG	9 cut(s)	29, 173, 206, 343, 398, 437, 594, 619, 723
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	3 cut(s)	116, 569, 650
HinfI	GANTC	5 cut(s)	35, 44, 97, 173, 428
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	2 cut(s)	359, 814
Hpy166II	GTNNAC	2 cut(s)	372, 769
Hpy188I	TCNGA	6 cut(s)	21, 54, 151, 461, 552, 703
Hpy188III	TCNNGA	6 cut(s)	101, 395, 543, 563, 575, 616
Hpy8I	GTNNAC	2 cut(s)	372, 769
HpyAV	CCTTC	3 cut(s)	25, 515, 799
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	7 cut(s)	160, 238, 290, 310, 414, 437, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 725
HpyF3I	CTNAG	2 cut(s)	18, 859
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	9 cut(s)	29, 173, 206, 343, 398, 437, 594, 619, 723
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
LmnI	GCTCC	3 cut(s)	7, 58, 461
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	4 cut(s)	23, 401, 706, 715
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	6 cut(s)	105, 207, 325, 441, 638, 816
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
MboII	GAAGA	2 cut(s)	98, 329
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	2 cut(s)	444, 696
MlyI	GAGTC	5 cut(s)	29, 53, 91, 182, 437
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	133, 145, 539
Mph1103I	ATGCAT	1 cut(s)	721
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	4 cut(s)	227, 380, 537, 611
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	420, 677, 798
MvaI	CCWGG	3 cut(s)	420, 677, 798
MwoI	GCNNNNNNNGC	2 cut(s)	166, 725
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	9 cut(s)	29, 173, 206, 343, 398, 437, 594, 619, 723
NlaIV	GGNNCC	2 cut(s)	9, 463
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	2 cut(s)	343, 723
PagI	TCATGA	2 cut(s)	394, 615
PciI	ACATGT	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	309, 531
PleI	GAGTC	5 cut(s)	29, 52, 91, 181, 436
PpsI	GAGTC	5 cut(s)	29, 52, 91, 181, 436
Ppu21I	YACGTR	1 cut(s)	298
PpuMI	RGGWCCY	2 cut(s)	154, 502
PscI	ACATGT	1 cut(s)	339
Psp5II	RGGWCCY	2 cut(s)	154, 502
Psp6I	CCWGG	3 cut(s)	418, 675, 796
PspGI	CCWGG	3 cut(s)	418, 675, 796
PspN4I	GGNNCC	2 cut(s)	9, 463
PspPI	GGNCC	3 cut(s)	154, 372, 502
PspPPI	RGGWCCY	2 cut(s)	154, 502
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	227, 380, 537, 611
SatI	GCNGC	2 cut(s)	308, 530
Sau3AI	GATC	6 cut(s)	103, 205, 323, 439, 636, 814
Sau96I	GGNCC	3 cut(s)	154, 372, 502
SchI	GAGTC	5 cut(s)	29, 53, 91, 182, 437
ScrFI	CCNGG	3 cut(s)	420, 677, 798
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	4 cut(s)	23, 401, 706, 715
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	3 cut(s)	154, 372, 502
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SnaBI	TACGTA	1 cut(s)	298
Sse9I	AATT	2 cut(s)	444, 696
SsiI	CCGC	2 cut(s)	402, 529
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	3 cut(s)	418, 675, 796
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	300
TasI	AATT	2 cut(s)	444, 696
TauI	GCSGC	1 cut(s)	532
Tru1I	TTAA	4 cut(s)	227, 380, 537, 611
Tru9I	TTAA	4 cut(s)	227, 380, 537, 611
TscAI	CASTG	2 cut(s)	130, 167
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	86, 330, 620, 652
TspRI	CASTG	2 cut(s)	130, 167
Vha464I	CTTAAG	1 cut(s)	226
VpaK11BI	GGWCC	3 cut(s)	154, 372, 502
XapI	RAATTY	2 cut(s)	444, 696
XceI	RCATGY	2 cut(s)	343, 723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
XspI	CTAG	1 cut(s)	606
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.