Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

7501893 .. 7511701

Gene Structure 9809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1102700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTGAATTCATTGTATCGGTCGAAAAGAAAGGACTCTTTTGAGGCGGTCGCGATGGAGCATATAAGAATGAGTGGAGCATACTGGGGTTTGACTACTCTTGATCTTTTGGGAAAGCTCCACGTTGTGGATGTTGAAGAGGTTGTTTCCTGGGTCCTCCAGTGCCAACATGATTCAGGCGGGTTTGGAGGTAGCATTGGACACGACCCACACATACTGTATACGTTAAGTGCTGTGCAGGCTTTGGCCTTGTTTGACAAGCTTTATGTTCTGGATGTTGAGAAGGTTGTAAGTTATGTGGCTGGGTTGCAAAATGAAGATGGATCGTTTTCAGGAGACATGTGGGGTGAAATTGATACACGGTTTTCTTATATTGCTATCTCTTGTCTCTCATTACTTCATCATTTGGATAAAATCAATGTGGAGAAGGCCGTCAGCTACATTTTAAGTTGTAAAAATCATGATGGAGGGTTTGGATCTACGCCCGGTGCGGAGTCTCATGCAGGTCAAATTTTCTGTTGCGTGGGTGCCCTTGCCATTACGGGGTCACTACATCATATTGACAAGGACCTCCTCGGTTGGTGGTTATGTGAGCGGCAAGATAATAAAACTGGAGGTCTTAATGGTCGGCCAGAGAAACTTCCCGACGTCTGCTACTCATGGTGGGCTCTTTCCAGTTTGATCATGATTGACAGAGTTCATTGGATCAATAAGGACAAGCTCATCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGAGGAATTTCTGACCGACCAGATGATGCCGTTGATGTCTACCATACATACTTTGGTGTAGCTGGACTTTCCCTTCTTGAATATCCAGGGCTGAAAGCTATCGATCCGGCATACGCTTTGCCAGTTGATGTCGTAAATAGGATTATATTGGACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

306

Amino Acids

33.81

Weight (kDa)

5.19

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	11 - 292	2.9e-101	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	651
Acc36I	ACCTGC	1 cut(s)	494
AccB1I	GGYRCC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	595
AccI	GTMKAC	2 cut(s)	221, 798
AccII	CGCG	1 cut(s)	53
AciI	CCGC	4 cut(s)	47, 180, 491, 595
AclWI	GGATC	4 cut(s)	331, 484, 713, 857
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	3 cut(s)	7, 510, 765
AcyI	GRCGYC	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	127, 543
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	4 cut(s)	7, 137, 755, 839
AjnI	CCWGG	3 cut(s)	149, 744, 844
AluBI	AGCT	6 cut(s)	118, 262, 438, 721, 821, 857
AluI	AGCT	6 cut(s)	118, 262, 438, 721, 821, 857
Alw26I	GTCTC	3 cut(s)	330, 392, 501
AlwI	GGATC	4 cut(s)	331, 484, 713, 857
AoxI	GGCC	3 cut(s)	246, 429, 629
ApoI	RAATTY	3 cut(s)	7, 510, 765
AspS9I	GGNCC	2 cut(s)	154, 568
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	154, 568
BaeGI	GKGCMC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	670
BccI	CCATC	3 cut(s)	49, 314, 458
BceAI	ACGGC	2 cut(s)	416, 773
BciT130I	CCWGG	3 cut(s)	151, 746, 846
BclI	TGATCA	1 cut(s)	681
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	3 cut(s)	330, 392, 501
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	1 cut(s)	596
BlsI	GCNGC	1 cut(s)	597
Bme1390I	CCNGG	4 cut(s)	151, 486, 746, 846
Bme18I	GGWCC	2 cut(s)	154, 568
BmgT120I	GGNCC	2 cut(s)	154, 568
BmiI	GGNNCC	2 cut(s)	155, 529
BmrFI	CCNGG	4 cut(s)	151, 486, 746, 846
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	775
BmuI	ACTGGG	1 cut(s)	94
BpmI	CTGGAG	2 cut(s)	143, 633
BpuMI	CCSGG	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	150, 574, 845
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 543
Bse1I	ACTGG	5 cut(s)	89, 160, 616, 675, 881
BseBI	CCWGG	3 cut(s)	151, 746, 846
BseCI	ATCGAT	1 cut(s)	861
BseDI	CCNNGG	3 cut(s)	150, 574, 845
BseGI	GGATG	2 cut(s)	136, 280
BseLI	CCNNNNNNNGG	2 cut(s)	127, 543
BseNI	ACTGG	5 cut(s)	89, 160, 616, 675, 881
BseRI	GAGGAG	1 cut(s)	563
BseSI	GKGCMC	1 cut(s)	532
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	2 cut(s)	23, 51
BshFI	GGCC	3 cut(s)	248, 431, 631
BshNI	GGYRCC	1 cut(s)	527
BshVI	ATCGAT	1 cut(s)	861
BsiEI	CGRYCG	2 cut(s)	23, 51
BsiSI	CCGG	2 cut(s)	486, 866
BslI	CCNNNNNNNGG	2 cut(s)	127, 543
BsmAI	GTCTC	3 cut(s)	330, 392, 501
BsnI	GGCC	3 cut(s)	248, 431, 631
Bsp1286I	GDGCHC	2 cut(s)	532, 670
Bsp143I	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	4 cut(s)	47, 180, 491, 595
BspANI	GGCC	3 cut(s)	248, 431, 631
BspDI	ATCGAT	1 cut(s)	861
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	2 cut(s)	460, 684
BspLI	GGNNCC	2 cut(s)	155, 529
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	4 cut(s)	331, 484, 713, 857
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	595
BsrI	ACTGG	5 cut(s)	89, 160, 616, 675, 881
BssECI	CCNNGG	3 cut(s)	150, 574, 845
BssMI	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
BssNAI	GTATAC	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	648
Bst1107I	GTATAC	1 cut(s)	222
Bst2UI	CCWGG	3 cut(s)	151, 746, 846
Bst4CI	ACNGT	2 cut(s)	219, 363
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	136, 280
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	6 cut(s)	106, 326, 479, 684, 708, 865
BstMAI	GTCTC	3 cut(s)	330, 392, 501
BstMBI	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
BstMCI	CGRYCG	2 cut(s)	23, 51
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	3 cut(s)	151, 746, 846
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	4 cut(s)	149, 484, 744, 844
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BstZ17I	GTATAC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	861
BsuRI	GGCC	3 cut(s)	248, 431, 631
BsuTUI	ATCGAT	1 cut(s)	861
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	136, 280
BtsIMutI	CAGTG	1 cut(s)	167
BtuMI	TCGCGA	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	2 cut(s)	460, 684
Cfr13I	GGNCC	2 cut(s)	154, 568
ClaI	ATCGAT	1 cut(s)	861
CviAII	CATG	6 cut(s)	170, 340, 461, 500, 660, 685
DpnI	GATC	6 cut(s)	105, 325, 478, 683, 707, 864
DpnII	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
DraIII	CACNNNGTG	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	154, 568
EcoO109I	RGGNCCY	2 cut(s)	154, 568
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	149, 744, 844
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	6 cut(s)	173, 343, 464, 503, 663, 688
FatI	CATG	6 cut(s)	169, 339, 460, 499, 659, 684
FauI	CCCGC	1 cut(s)	173
FbaI	TGATCA	1 cut(s)	681
FblI	GTMKAC	2 cut(s)	221, 798
Fnu4HI	GCNGC	1 cut(s)	596
FokI	GGATG	2 cut(s)	143, 287
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	596
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	2 cut(s)	143, 633
HaeIII	GGCC	3 cut(s)	248, 431, 631
HapII	CCGG	2 cut(s)	486, 866
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	6 cut(s)	173, 343, 464, 503, 663, 688
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	35, 173, 494
HpaII	CCGG	2 cut(s)	486, 866
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	2 cut(s)	222, 799
Hpy188I	TCNGA	1 cut(s)	772
Hpy188III	TCNNGA	8 cut(s)	52, 101, 272, 333, 461, 644, 685, 836
Hpy8I	GTNNAC	2 cut(s)	222, 799
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	277, 421, 842
HpyCH4III	ACNGT	2 cut(s)	219, 363
HpyCH4IV	ACGT	3 cut(s)	123, 224, 648
HpyCH4V	TGCA	3 cut(s)	238, 310, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	3 cut(s)	123, 224, 648
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	6 cut(s)	173, 343, 464, 503, 663, 688
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
LmnI	GCTCC	3 cut(s)	58, 77, 123
LweI	GCATC	1 cut(s)	775
MaeII	ACGT	3 cut(s)	123, 224, 648
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	6 cut(s)	105, 325, 478, 683, 707, 864
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
MboII	GAAGA	2 cut(s)	149, 329
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	532, 670
MluCI	AATT	4 cut(s)	7, 351, 510, 765
MlyI	GAGTC	2 cut(s)	29, 503
MnlI	CCTC	9 cut(s)	37, 133, 167, 182, 461, 581, 584, 608, 755
MseI	TTAA	3 cut(s)	227, 446, 621
MspI	CCGG	2 cut(s)	486, 866
MspR9I	CCNGG	4 cut(s)	151, 486, 746, 846
MvaI	CCWGG	3 cut(s)	151, 746, 846
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	486
NdeII	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
NlaIII	CATG	6 cut(s)	173, 343, 464, 503, 663, 688
NlaIV	GGNNCC	2 cut(s)	155, 529
NmuCI	GTSAC	1 cut(s)	546
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	343
PagI	TCATGA	2 cut(s)	460, 684
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	597
PleI	GAGTC	2 cut(s)	29, 502
PpsI	GAGTC	2 cut(s)	29, 502
PpuMI	RGGWCCY	2 cut(s)	154, 568
PscI	ACATGT	1 cut(s)	339
Psp5II	RGGWCCY	2 cut(s)	154, 568
Psp6I	CCWGG	3 cut(s)	149, 744, 844
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	3 cut(s)	149, 744, 844
PspN4I	GGNNCC	2 cut(s)	155, 529
PspPI	GGNCC	2 cut(s)	154, 568
PspPPI	RGGWCCY	2 cut(s)	154, 568
PsuI	RGATCY	1 cut(s)	476
RruI	TCGCGA	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	227, 446, 621
SatI	GCNGC	1 cut(s)	596
Sau3AI	GATC	6 cut(s)	103, 323, 476, 681, 705, 862
Sau96I	GGNCC	2 cut(s)	154, 568
SchI	GAGTC	2 cut(s)	29, 503
ScrFI	CCNGG	4 cut(s)	151, 486, 746, 846
SduI	GDGCHC	2 cut(s)	532, 670
SfaNI	GCATC	1 cut(s)	775
SinI	GGWCC	2 cut(s)	154, 568
Sse9I	AATT	4 cut(s)	7, 351, 510, 765
SsiI	CCGC	4 cut(s)	47, 180, 491, 595
StyD4I	CCNGG	4 cut(s)	149, 484, 744, 844
TaaI	ACNGT	2 cut(s)	219, 363
TaiI	ACGT	3 cut(s)	126, 227, 651
TaqI	TCGA	2 cut(s)	23, 861
TaqII	GACCGA	2 cut(s)	9, 789
TasI	AATT	4 cut(s)	7, 351, 510, 765
TauI	GCSGC	1 cut(s)	598
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	227, 446, 621
Tru9I	TTAA	3 cut(s)	227, 446, 621
TscAI	CASTG	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	4 cut(s)	330, 389, 689, 721
TspRI	CASTG	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	154, 568
XapI	RAATTY	3 cut(s)	7, 510, 765
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XmiI	GTMKAC	2 cut(s)	221, 798
ZraI	GACGTC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.