Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

50667134 .. 50670139

Gene Structure 3006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG386300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCAATGCCATCTCAGGAGAAGGACTCTTATGAGTCAGTTTTGATGGAGGATATAAGAATGAATGGAGCTTACTGGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCAATGAGGTCGTTTCAGAGGTCCTGCAGTGCCAGCATGAGTCAGCTGTTTACTTTGTTTTGGCCTTACTTGACAAGGTTGATGTTTTGGATGTTGAAAAGGTTGCAGATTACGTAGCAGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACATGGTTTTCTTATATTGCTATCTGCTGTCAAATTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACTTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTAGCAGAACTTGTGACGATAAGGCATTGGACTTGGAAAACTGCGGCTCCTGGTTCTCAGACATTATGGTCTCAGACTCCGTTTAGCTTGTGGGATTCGATTTACTCATTGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

250

Amino Acids

28.35

Weight (kDa)

4.45

Isoelectric Point (pI)

23.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	58 - 109	1.5e-06	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	110 - 222	1.2e-40	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	700
AccBSI	CCGCTC	1 cut(s)	415
AciI	CCGC	2 cut(s)	415, 677
AclWI	GGATC	2 cut(s)	271, 530
AcsI	RAATTY	2 cut(s)	330, 582
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	221, 572
AjnI	CCWGG	2 cut(s)	561, 682
AluBI	AGCT	6 cut(s)	71, 109, 170, 457, 538, 720
AluI	AGCT	6 cut(s)	71, 109, 170, 457, 538, 720
Alw26I	GTCTC	2 cut(s)	372, 708
AlwI	GGATC	2 cut(s)	271, 530
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	2 cut(s)	330, 582
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	4 cut(s)	19, 40, 254, 393
BciT130I	CCWGG	2 cut(s)	563, 684
BcoDI	GTCTC	2 cut(s)	372, 708
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	248, 416, 678
BlsI	GCNGC	3 cut(s)	249, 417, 679
Bme1390I	CCNGG	2 cut(s)	563, 684
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	349, 681
BmrFI	CCNGG	2 cut(s)	563, 684
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	592, 601
BmuI	ACTGGG	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BsaAI	YACGTR	1 cut(s)	238
BsaI	GGTCTC	2 cut(s)	372, 708
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	563, 684
BseGI	GGATG	3 cut(s)	127, 220, 404
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	29, 704, 719
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	372, 708
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	2 cut(s)	372, 708
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	3 cut(s)	94, 263, 522
BspACI	CCGC	2 cut(s)	415, 677
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	28, 703, 718
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	2 cut(s)	349, 681
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	2 cut(s)	271, 530
BspTNI	GGTCTC	2 cut(s)	372, 708
BsrBI	CCGCTC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	3 cut(s)	94, 263, 522
Bst2UI	CCWGG	2 cut(s)	563, 684
Bst4CI	ACNGT	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	158, 540
BstDEI	CTNAG	3 cut(s)	15, 690, 705
BstF5I	GGATG	3 cut(s)	127, 220, 404
BstKTI	GATC	3 cut(s)	97, 266, 525
BstMAI	GTCTC	2 cut(s)	372, 708
BstMBI	GATC	3 cut(s)	94, 263, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 611
BstNI	CCWGG	2 cut(s)	563, 684
BstNSI	RCATGY	2 cut(s)	283, 609
BstSCI	CCNGG	2 cut(s)	561, 682
BstSFI	CTRYAG	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	127, 220, 404
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	114, 158
Cac8I	GCNNGC	2 cut(s)	158, 540
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	145
CviAII	CATG	6 cut(s)	161, 280, 300, 477, 502, 606
DdeI	CTNAG	3 cut(s)	15, 690, 705
DpnI	GATC	3 cut(s)	96, 265, 524
DpnII	GATC	3 cut(s)	94, 263, 522
DrdI	GACNNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	700
Eco105I	TACGTA	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	352
Eco31I	GGTCTC	2 cut(s)	372, 708
Eco47I	GGWCC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	561, 682
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	6 cut(s)	164, 283, 303, 480, 505, 609
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	6 cut(s)	160, 279, 299, 476, 501, 605
Fnu4HI	GCNGC	3 cut(s)	248, 416, 678
FokI	GGATG	3 cut(s)	134, 227, 411
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	3 cut(s)	248, 416, 678
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	3 cut(s)	248, 416, 678
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	6 cut(s)	164, 283, 303, 480, 505, 609
HindIII	AAGCTT	3 cut(s)	107, 455, 536
HinfI	GANTC	6 cut(s)	26, 35, 88, 164, 709, 728
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	5 cut(s)	142, 347, 589, 693, 708
Hpy188III	TCNNGA	6 cut(s)	17, 92, 429, 449, 461, 502
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	151, 230, 250, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 611
HpyF3I	CTNAG	3 cut(s)	15, 690, 705
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	6 cut(s)	164, 283, 303, 480, 505, 609
Kzo9I	GATC	3 cut(s)	94, 263, 522
LmnI	GCTCC	3 cut(s)	68, 347, 685
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	2 cut(s)	592, 601
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	646
MalI	GATC	3 cut(s)	96, 265, 524
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	3 cut(s)	94, 263, 522
MboII	GAAGA	2 cut(s)	89, 269
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	330, 582
MlyI	GAGTC	5 cut(s)	20, 44, 82, 173, 703
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	43, 124, 136, 425
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	3 cut(s)	423, 438, 497
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	563, 684
MvaI	CCWGG	2 cut(s)	563, 684
MwoI	GCNNNNNNNGC	2 cut(s)	157, 611
NdeII	GATC	3 cut(s)	94, 263, 522
NlaIII	CATG	6 cut(s)	164, 283, 303, 480, 505, 609
NlaIV	GGNNCC	2 cut(s)	349, 681
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	2 cut(s)	283, 609
PagI	TCATGA	1 cut(s)	501
PciI	ACATGT	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	3 cut(s)	249, 417, 679
PleI	GAGTC	5 cut(s)	20, 43, 82, 172, 703
PpsI	GAGTC	5 cut(s)	20, 43, 82, 172, 703
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	145
PscI	ACATGT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	561, 682
PspGI	CCWGG	2 cut(s)	561, 682
PspN4I	GGNNCC	2 cut(s)	349, 681
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	423, 438, 497
SatI	GCNGC	3 cut(s)	248, 416, 678
Sau3AI	GATC	3 cut(s)	94, 263, 522
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	5 cut(s)	20, 44, 82, 173, 703
ScrFI	CCNGG	2 cut(s)	563, 684
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	592, 601
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	145
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	2 cut(s)	330, 582
SsiI	CCGC	2 cut(s)	415, 677
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	561, 682
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	731
TasI	AATT	2 cut(s)	330, 582
TauI	GCSGC	2 cut(s)	418, 680
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	3 cut(s)	423, 438, 497
Tru9I	TTAA	3 cut(s)	423, 438, 497
TscAI	CASTG	2 cut(s)	121, 158
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	4 cut(s)	77, 270, 506, 538
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	121, 158
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	330, 582
XceI	RCATGY	2 cut(s)	283, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XspI	CTAG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.