Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

31134818 .. 31146526

Gene Structure 11709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1230700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACCAGATATTTATCAACAGATGGGGAGCTGGTTGCCCAGAAACATGTTCAATTCATTCTCTCAGTCGAAAAGAGGGACTCTTTGGAGGCTGTGGCAATGGAGCATCCAAGAATGAATGGGGAATATTGGTGTTTAACAATTCTTGATCTCCTCGGAAAGCTTCAGGCGGTCGATGTTGATGAGGTTGTTTCGTGGGTTCTCCAGTGCCAGCATGACTCAAGTGGGTTCGAAGGTAACATTGGGCACGAGCCACATGTACAATACACCTTAAGTGCCGTGCAGGTTTTGGCCTTATTTAACAAGATTGATGTTCTGGATGCTGACAAGGGGTGGTTGTCTTATATTGCTATATCGTGTCTCTCATTACTACATCGTTTGGATAAAATCAGTGTGGAGAAGGCCGTGAACTATAGTGTAACTTGTAAAAATCATGTTGGTGGATTTGGATGCACACCTGGTGGGAAGTCTCATGCAGGTCAAATTTTCTGTTGTATCTGGTACTCATGGTGGGTTCTTTCTAGTTTGGTCATCATTGACAGAGTTCATTGGATTGGTAAGGAAAAGCTTGTCAAGTTCGTTTTAGACTGCCAGGACATTGAAAATGGAGGAATTTCTGACAGACCAGATGACACTGTTGATGTCTACCATACATACTTTGCTGTAGCTGGATTTTCCCTTCTTCAATATCCCGGGGTGAAAGCCATAGATCCAGCTTATGCTTTACCAGTTGATGTTACTAGTGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

251

Amino Acids

27.78

Weight (kDa)

5.26

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	12 - 108	1.4e-17	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	114 - 166	3.7e-11	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	168 - 241	8.7e-22	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	274, 467
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	704
AcsI	RAATTY	2 cut(s)	483, 612
AcuI	CTGAAG	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	261, 503
AflII	CTTAAG	1 cut(s)	271
AflIII	ACRYGT	2 cut(s)	46, 256
AgsI	TTSAA	3 cut(s)	53, 602, 686
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	2 cut(s)	457, 591
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	5 cut(s)	31, 163, 568, 668, 716
AluI	AGCT	5 cut(s)	31, 163, 568, 668, 716
Alw26I	GTCTC	2 cut(s)	365, 474
AlwI	GGATC	1 cut(s)	704
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	2 cut(s)	291, 402
ApoI	RAATTY	2 cut(s)	483, 612
AsuC2I	CCSGG	2 cut(s)	693, 694
AsuHPI	GGTGA	1 cut(s)	709
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	248
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	2 cut(s)	263, 389
BciT130I	CCWGG	2 cut(s)	459, 593
BcnI	CCSGG	2 cut(s)	693, 694
BcoDI	GTCTC	2 cut(s)	365, 474
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	2 cut(s)	522, 741
BfmI	CTRYAG	2 cut(s)	412, 663
BfrI	CTTAAG	1 cut(s)	271
BfuAI	ACCTGC	2 cut(s)	274, 467
Bme1390I	CCNGG	4 cut(s)	459, 593, 693, 694
BmeT110I	CYCGRG	1 cut(s)	692
BmrFI	CCNGG	4 cut(s)	459, 593, 693, 694
BmsI	GCATC	3 cut(s)	115, 310, 440
BpmI	CTGGAG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	2 cut(s)	693, 694
BsaBI	GATNNNNATC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	154, 692, 693
Bse1I	ACTGG	2 cut(s)	205, 728
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	459, 593
BseDI	CCNNGG	3 cut(s)	154, 692, 693
BseGI	GGATG	3 cut(s)	106, 325, 455
BseJI	GATNNNNATC	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	205, 728
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	302
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	293, 404
BsiEI	CGRYCG	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	693
BslFI	GGGAC	1 cut(s)	92
BsmAI	GTCTC	2 cut(s)	365, 474
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	293, 404
BsoBI	CYCGRG	1 cut(s)	692
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	148, 709
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	293, 404
BspCNI	CTCAG	1 cut(s)	77
BspMI	ACCTGC	2 cut(s)	274, 467
BspPI	GGATC	1 cut(s)	704
BspT104I	TTCGAA	1 cut(s)	231
BspTI	CTTAAG	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	205, 728
BssECI	CCNNGG	3 cut(s)	154, 692, 693
BssMI	GATC	2 cut(s)	148, 709
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	459, 593
Bst4CI	ACNGT	1 cut(s)	637
BstAFI	CTTAAG	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	106, 325, 455
BstKTI	GATC	2 cut(s)	151, 712
BstMAI	GTCTC	2 cut(s)	365, 474
BstMBI	GATC	2 cut(s)	148, 709
BstMCI	CGRYCG	1 cut(s)	174
BstNI	CCWGG	2 cut(s)	459, 593
BstNSI	RCATGY	2 cut(s)	50, 260
BstSCI	CCNGG	4 cut(s)	457, 591, 691, 692
BstSFI	CTRYAG	2 cut(s)	412, 663
BstSLI	GKGCMC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	293, 404
BtsCI	GGATG	3 cut(s)	106, 325, 455
BtsIMutI	CAGTG	3 cut(s)	212, 397, 633
BveI	ACCTGC	2 cut(s)	274, 467
Cac8I	GCNNGC	1 cut(s)	212
Cfr9I	CCCGGG	1 cut(s)	692
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	260, 502
CviAII	CATG	6 cut(s)	47, 215, 257, 434, 473, 507
CviQI	GTAC	2 cut(s)	260, 502
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	2 cut(s)	150, 711
DpnII	GATC	2 cut(s)	148, 709
DraIII	CACNNNGTG	1 cut(s)	461
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	692
EcoRII	CCWGG	2 cut(s)	457, 591
FaeI	CATG	6 cut(s)	50, 218, 260, 437, 476, 510
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	6 cut(s)	46, 214, 256, 433, 472, 506
FblI	GTMKAC	1 cut(s)	645
FokI	GGATG	3 cut(s)	93, 332, 462
FspBI	CTAG	2 cut(s)	522, 741
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	293, 404
HapII	CCGG	1 cut(s)	693
Hin1II	CATG	6 cut(s)	50, 218, 260, 437, 476, 510
HindIII	AAGCTT	2 cut(s)	161, 566
HinfI	GANTC	2 cut(s)	80, 218
HpaII	CCGG	1 cut(s)	693
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	2 cut(s)	409, 646
Hpy188I	TCNGA	2 cut(s)	158, 619
Hpy188III	TCNNGA	2 cut(s)	146, 317
Hpy8I	GTNNAC	2 cut(s)	409, 646
HpyAV	CCTTC	3 cut(s)	227, 394, 689
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	283, 453, 476
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	6 cut(s)	50, 218, 260, 437, 476, 510
Kzo9I	GATC	2 cut(s)	148, 709
LmnI	GCTCC	2 cut(s)	28, 103
LweI	GCATC	3 cut(s)	115, 310, 440
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	2 cut(s)	522, 741
MaeIII	GTNAC	3 cut(s)	236, 418, 736
MalI	GATC	2 cut(s)	150, 711
MboI	GATC	2 cut(s)	148, 709
MboII	GAAGA	1 cut(s)	674
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	4 cut(s)	53, 141, 483, 612
MlyI	GAGTC	2 cut(s)	74, 212
MnlI	CCTC	5 cut(s)	69, 82, 164, 178, 602
MseI	TTAA	3 cut(s)	137, 272, 300
MslI	CAYNNNNRTG	1 cut(s)	438
MspCI	CTTAAG	1 cut(s)	271
MspI	CCGG	1 cut(s)	693
MspR9I	CCNGG	4 cut(s)	459, 593, 693, 694
MvaI	CCWGG	2 cut(s)	459, 593
NciI	CCSGG	2 cut(s)	693, 694
NdeII	GATC	2 cut(s)	148, 709
NlaIII	CATG	6 cut(s)	50, 218, 260, 437, 476, 510
NspI	RCATGY	2 cut(s)	50, 260
NspV	TTCGAA	1 cut(s)	231
PciI	ACATGT	2 cut(s)	46, 256
PleI	GAGTC	2 cut(s)	74, 212
PpsI	GAGTC	2 cut(s)	74, 212
PscI	ACATGT	2 cut(s)	46, 256
Psp6I	CCWGG	2 cut(s)	457, 591
PspGI	CCWGG	2 cut(s)	457, 591
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	2 cut(s)	261, 503
RsaNI	GTAC	2 cut(s)	260, 502
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	137, 272, 300
Sau3AI	GATC	2 cut(s)	148, 709
SchI	GAGTC	2 cut(s)	74, 212
ScrFI	CCNGG	4 cut(s)	459, 593, 693, 694
SduI	GDGCHC	1 cut(s)	249
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	3 cut(s)	115, 310, 440
SfcI	CTRYAG	2 cut(s)	412, 663
SfuI	TTCGAA	1 cut(s)	231
SmaI	CCCGGG	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	220, 271
SmoI	CTYRAG	2 cut(s)	220, 271
SpeI	ACTAGT	1 cut(s)	740
Sse9I	AATT	4 cut(s)	53, 141, 483, 612
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	2 cut(s)	522, 741
StyD4I	CCNGG	4 cut(s)	457, 591, 691, 692
TaaI	ACNGT	1 cut(s)	637
TaqI	TCGA	3 cut(s)	69, 174, 231
TasI	AATT	4 cut(s)	53, 141, 483, 612
TatI	WGTACW	1 cut(s)	259
Tru1I	TTAA	3 cut(s)	137, 272, 300
Tru9I	TTAA	3 cut(s)	137, 272, 300
TscAI	CASTG	3 cut(s)	212, 397, 640
TspDTI	ATGAA	3 cut(s)	46, 131, 536
TspMI	CCCGGG	1 cut(s)	692
TspRI	CASTG	3 cut(s)	212, 397, 640
Vha464I	CTTAAG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	483, 612
XceI	RCATGY	2 cut(s)	50, 260
XmaI	CCCGGG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	522, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.