Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

44828274 .. 44832774

Gene Structure 4501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGCATATAAGATTGAATGGAGCTTACTGGGGTTTGACAACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCGATGAGGTTGTTTCAGAGGTCATGCAGTGCCAGCATGAGTCAGGTGGCTTTGGTGGTAACAGTGGACATGATCCACACATACTCTATACCTTAAGTGCTGTGCAGGTTTTGGCCTTATTTGACAAGGTTGATGTTTTGGATGTCGAAAAAGTTGCAGATTATGTAGCTGGACTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGGTTTTCATATATTGCTATTTGTTGTCTCGCATTACTACATCTTTTGGATAAAATCAATGTGGAGAAAGCTGTGGACTATATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTCATGCAGGTCAAATTTTCTGTTGTGTGGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGCGAGCGGCAAGTTAAATCAGGTGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTAATCATGATTGACAGGGTTCATTGGATCGATAAGCAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACACTGAAAATGGGGGAATTTCTGATAGACCAGATGATGCATGTGATGCCTACCATACATACTTTGGTGTTGCAGGACTTTCCTTACTTGAATATCCTGGGGTGAAAGCCATAGATCCAGCTTATGCTTTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

288

Amino Acids

31.53

Weight (kDa)

4.72

Isoelectric Point (pI)

19.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	2 - 273	1.3e-99	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	175, 440
AccBSI	CCGCTC	1 cut(s)	541
AciI	CCGC	2 cut(s)	414, 541
AclWI	GGATC	4 cut(s)	146, 277, 656, 800
AcsI	RAATTY	2 cut(s)	456, 708
AflII	CTTAAG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	19, 782
AjnI	CCWGG	3 cut(s)	430, 687, 787
AluBI	AGCT	7 cut(s)	26, 64, 248, 377, 583, 664, 812
AluI	AGCT	7 cut(s)	26, 64, 248, 377, 583, 664, 812
Alw26I	GTCTC	3 cut(s)	338, 447, 498
AlwI	GGATC	4 cut(s)	146, 277, 656, 800
AoxI	GGCC	1 cut(s)	192
ApoI	RAATTY	2 cut(s)	456, 708
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	305, 805
AvaII	GGWCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	478
BccI	CCATC	3 cut(s)	260, 404, 519
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	3 cut(s)	432, 689, 789
BcoDI	GTCTC	3 cut(s)	338, 447, 498
BfaI	CTAG	1 cut(s)	618
BfrI	CTTAAG	1 cut(s)	172
BfuAI	ACCTGC	2 cut(s)	175, 440
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	3 cut(s)	432, 689, 789
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	3 cut(s)	432, 689, 789
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	413, 718, 727
BmuI	ACTGGG	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	788
Bse1I	ACTGG	2 cut(s)	35, 824
BseBI	CCWGG	3 cut(s)	432, 689, 789
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	788
BseGI	GGATG	4 cut(s)	82, 226, 428, 530
BseNI	ACTGG	2 cut(s)	35, 824
BsgI	GTGCAG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	651
BslFI	GGGAC	1 cut(s)	296
BsmAI	GTCTC	3 cut(s)	338, 447, 498
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	498
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	49, 151, 269, 648, 805
BspACI	CCGC	2 cut(s)	414, 541
BspANI	GGCC	1 cut(s)	194
BspDI	ATCGAT	1 cut(s)	651
BspHI	TCATGA	2 cut(s)	406, 627
BspLI	GGNNCC	1 cut(s)	475
BspMI	ACCTGC	2 cut(s)	175, 440
BspPI	GGATC	4 cut(s)	146, 277, 656, 800
BspTI	CTTAAG	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	498
BsrBI	CCGCTC	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	35, 824
BssECI	CCNNGG	1 cut(s)	788
BssMI	GATC	5 cut(s)	49, 151, 269, 648, 805
Bst2UI	CCWGG	3 cut(s)	432, 689, 789
Bst4CI	ACNGT	3 cut(s)	73, 143, 309
BstAFI	CTTAAG	1 cut(s)	172
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	4 cut(s)	113, 428, 539, 666
BstDEI	CTNAG	1 cut(s)	850
BstF5I	GGATG	4 cut(s)	82, 226, 428, 530
BstKTI	GATC	5 cut(s)	52, 154, 272, 651, 808
BstMAI	GTCTC	3 cut(s)	338, 447, 498
BstMBI	GATC	5 cut(s)	49, 151, 269, 648, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 737
BstNI	CCWGG	3 cut(s)	432, 689, 789
BstNSI	RCATGY	2 cut(s)	289, 735
BstSCI	CCNGG	3 cut(s)	430, 687, 787
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	82, 226, 428, 530
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	4 cut(s)	69, 113, 148, 693
BveI	ACCTGC	2 cut(s)	175, 440
Cac8I	GCNNGC	4 cut(s)	113, 428, 539, 666
CciI	TCATGA	2 cut(s)	406, 627
Cfr13I	GGNCC	1 cut(s)	514
ClaI	ATCGAT	1 cut(s)	651
CviAII	CATG	9 cut(s)	103, 116, 149, 286, 407, 446, 603, 628, 732
DdeI	CTNAG	1 cut(s)	850
DpnI	GATC	5 cut(s)	51, 153, 271, 650, 807
DpnII	GATC	5 cut(s)	49, 151, 269, 648, 805
EciI	GGCGGA	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	514
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	3 cut(s)	430, 687, 787
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	9 cut(s)	106, 119, 152, 289, 410, 449, 606, 631, 735
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	9 cut(s)	102, 115, 148, 285, 406, 445, 602, 627, 731
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	4 cut(s)	89, 233, 435, 537
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	542
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	1 cut(s)	542
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	9 cut(s)	106, 119, 152, 289, 410, 449, 606, 631, 735
HindIII	AAGCTT	3 cut(s)	62, 581, 662
HinfI	GANTC	2 cut(s)	119, 440
HphI	GGTGA	2 cut(s)	305, 805
Hpy166II	GTNNAC	2 cut(s)	146, 382
Hpy188I	TCNGA	2 cut(s)	97, 715
Hpy188III	TCNNGA	5 cut(s)	47, 407, 575, 587, 628
Hpy8I	GTNNAC	2 cut(s)	146, 382
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	3 cut(s)	73, 143, 309
HpyCH4V	TGCA	8 cut(s)	106, 184, 236, 256, 426, 449, 731, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 737
HpyF3I	CTNAG	1 cut(s)	850
Hsp92II	CATG	9 cut(s)	106, 119, 152, 289, 410, 449, 606, 631, 735
Kzo9I	GATC	5 cut(s)	49, 151, 269, 648, 805
LmnI	GCTCC	3 cut(s)	4, 23, 473
LweI	GCATC	3 cut(s)	413, 718, 727
MaeI	CTAG	1 cut(s)	618
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	5 cut(s)	51, 153, 271, 650, 807
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	5 cut(s)	49, 151, 269, 648, 805
MboII	GAAGA	2 cut(s)	44, 275
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	2 cut(s)	456, 708
MlyI	GAGTC	2 cut(s)	128, 449
MnlI	CCTC	2 cut(s)	79, 91
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	5 cut(s)	173, 392, 549, 564, 623
MspCI	CTTAAG	1 cut(s)	172
MspR9I	CCNGG	3 cut(s)	432, 689, 789
MvaI	CCWGG	3 cut(s)	432, 689, 789
MwoI	GCNNNNNNNGC	2 cut(s)	112, 737
NdeII	GATC	5 cut(s)	49, 151, 269, 648, 805
NlaIII	CATG	9 cut(s)	106, 119, 152, 289, 410, 449, 606, 631, 735
NlaIV	GGNNCC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	2 cut(s)	289, 735
PagI	TCATGA	2 cut(s)	406, 627
PciI	ACATGT	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	2 cut(s)	127, 448
PpsI	GAGTC	2 cut(s)	127, 448
PpuMI	RGGWCCY	1 cut(s)	514
PscI	ACATGT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	430, 687, 787
PspGI	CCWGG	3 cut(s)	430, 687, 787
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	514
PspPPI	RGGWCCY	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	805
SaqAI	TTAA	5 cut(s)	173, 392, 549, 564, 623
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	5 cut(s)	49, 151, 269, 648, 805
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	2 cut(s)	128, 449
ScrFI	CCNGG	3 cut(s)	432, 689, 789
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	3 cut(s)	413, 718, 727
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	2 cut(s)	456, 708
SsiI	CCGC	2 cut(s)	414, 541
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	3 cut(s)	430, 687, 787
TaaI	ACNGT	3 cut(s)	73, 143, 309
TaqI	TCGA	3 cut(s)	81, 225, 651
TasI	AATT	2 cut(s)	456, 708
TauI	GCSGC	1 cut(s)	544
Tru1I	TTAA	5 cut(s)	173, 392, 549, 564, 623
Tru9I	TTAA	5 cut(s)	173, 392, 549, 564, 623
TscAI	CASTG	4 cut(s)	76, 113, 148, 700
TspDTI	ATGAA	4 cut(s)	276, 303, 632, 664
TspRI	CASTG	4 cut(s)	76, 113, 148, 700
Vha464I	CTTAAG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	2 cut(s)	456, 708
XceI	RCATGY	2 cut(s)	289, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XspI	CTAG	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.