Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

12400722 .. 12405947

Gene Structure 5226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCTCCGGCCTCCGTCAGCCAATTCAGAAATGGTTGGGAACTCAGAAGACATGTACGTTTTGTTTGTGTTGCTTCAACTGCTTCTGCTGTTGGTTGGACTAAATTAAGCTTGCTATCCTTAAGGATGAATGGAGCTTACTTGGGTTTGACGACTCTTGATCTTCTTGGAAAGCTTGACACTGTGGATGTCAATGAGGTCGTTTCAGAGGTCCTGCAGTGCCAGCATGAATCAGGTGTTTACTTTGTATACATTCTTAGCCCAGCAGTAATCGACTATGGGTTTGGTGGTAACATTGGACATGATCCACACATACTTTGTACCTTAAGTGCTGTGCAGGTTTTGGCCTTACTTGACAAGGTTGATGTTTGGATGTTGAAAATGTTGCAGATTCAAATTTTGTCTGGTTTAATATTCAACTCAGACGTAGCAGGGCTGCAAAATGAAGATGGATCATTTTCAGGGGACATGTGGGGTGAAGTTGATACACGAAAGCTGTGGACCATTTTAAGTTGTAAAAATCATGATGGCGGATTTGGATGCACGCCTGGTGGGGAGTCTGATGCAGATCAAATTTTCTGTTGTGTCGGAGCCCTTGCTATCACAGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTTAAATCAGGAGGTCTTAATGGTCGTCCAGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATGTAGCTTAATCATGATTGACAGGGTTCATTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGCCAGGACATTGAAAATGGGGGAATTTCTGATAGACCAGATAATGCATGTGATGCCTACCATACATACTTAGGTGTAGCAGAGAAGAGGCAAAGCAACATATACCCAGGAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

306

Amino Acids

33.92

Weight (kDa)

5.34

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	17 - 167	4.4e-14	Prenyltransferase alpha-alpha toroid domain
Prenyltrans	PF00432	169 - 294	5.9e-48	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	531, 658
AclWI	GGATC	3 cut(s)	299, 460, 773
AcsI	RAATTY	3 cut(s)	396, 573, 825
AfaI	GTAC	2 cut(s)	57, 322
AflII	CTTAAG	2 cut(s)	121, 325
AflIII	ACRYGT	2 cut(s)	52, 468
AgsI	TTSAA	5 cut(s)	78, 379, 395, 418, 815
AjnI	CCWGG	3 cut(s)	547, 804, 907
AluBI	AGCT	7 cut(s)	111, 137, 175, 496, 700, 738, 781
AluI	AGCT	7 cut(s)	111, 137, 175, 496, 700, 738, 781
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	3 cut(s)	299, 460, 773
AoxI	GGCC	2 cut(s)	9, 345
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	3 cut(s)	396, 573, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspS9I	GGNCC	3 cut(s)	211, 501, 631
AsuHPI	GGTGA	1 cut(s)	488
AvaII	GGWCC	3 cut(s)	211, 501, 631
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	3 cut(s)	443, 521, 636
BciT130I	CCWGG	3 cut(s)	549, 806, 909
BcoDI	GTCTC	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	215
BfrI	CTTAAG	2 cut(s)	121, 325
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	2 cut(s)	437, 659
BlsI	GCNGC	2 cut(s)	438, 660
Bme1390I	CCNGG	3 cut(s)	549, 806, 909
Bme18I	GGWCC	3 cut(s)	211, 501, 631
BmgT120I	GGNCC	3 cut(s)	211, 501, 631
BmiI	GGNNCC	1 cut(s)	592
BmrFI	CCNGG	3 cut(s)	549, 806, 909
BmsI	GCATC	3 cut(s)	530, 553, 844
BpiI	GAAGAC	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	907
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	3 cut(s)	549, 806, 909
BseDI	CCNNGG	1 cut(s)	907
BseGI	GGATG	5 cut(s)	132, 193, 378, 545, 647
BseJI	GATNNNNATC	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	58, 435
BseXI	GCAGC	1 cut(s)	423
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	2 cut(s)	11, 347
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	11, 347
Bso31I	GGTCTC	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	160, 304, 452, 568, 765
BspACI	CCGC	2 cut(s)	531, 658
BspANI	GGCC	2 cut(s)	11, 347
BspCNI	CTCAG	2 cut(s)	57, 434
BspHI	TCATGA	2 cut(s)	523, 744
BspLI	GGNNCC	1 cut(s)	592
BspMAI	CTGCAG	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	3 cut(s)	299, 460, 773
BspTI	CTTAAG	2 cut(s)	121, 325
BspTNI	GGTCTC	1 cut(s)	615
BsrBI	CCGCTC	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	907
BssMI	GATC	5 cut(s)	160, 304, 452, 568, 765
BssNAI	GTATAC	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	250
Bst2UI	CCWGG	3 cut(s)	549, 806, 909
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	881
BstAFI	CTTAAG	2 cut(s)	121, 325
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstC8I	GCNNGC	4 cut(s)	113, 224, 545, 783
BstDEI	CTNAG	4 cut(s)	44, 257, 421, 871
BstF5I	GGATG	5 cut(s)	132, 193, 378, 545, 647
BstKTI	GATC	5 cut(s)	163, 307, 455, 571, 768
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	5 cut(s)	160, 304, 452, 568, 765
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 223, 854
BstNI	CCWGG	3 cut(s)	549, 806, 909
BstNSI	RCATGY	3 cut(s)	56, 472, 852
BstSCI	CCNGG	3 cut(s)	547, 804, 907
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	55
BstZ17I	GTATAC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	11, 347
BtsCI	GGATG	5 cut(s)	132, 193, 378, 545, 647
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	180, 224
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	4 cut(s)	113, 224, 545, 783
CciI	TCATGA	2 cut(s)	523, 744
Cfr13I	GGNCC	3 cut(s)	211, 501, 631
Csp6I	GTAC	2 cut(s)	56, 321
CviAII	CATG	8 cut(s)	53, 227, 302, 469, 524, 720, 745, 849
CviQI	GTAC	2 cut(s)	56, 321
DdeI	CTNAG	4 cut(s)	44, 257, 421, 871
DpnI	GATC	5 cut(s)	162, 306, 454, 570, 767
DpnII	GATC	5 cut(s)	160, 304, 452, 568, 765
Eam1104I	CTCTTC	1 cut(s)	881
EarI	CTCTTC	1 cut(s)	881
EciI	GGCGGA	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	615
Eco47I	GGWCC	3 cut(s)	211, 501, 631
EcoO109I	RGGNCCY	2 cut(s)	211, 631
EcoRII	CCWGG	3 cut(s)	547, 804, 907
EcoT22I	ATGCAT	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	595
FaeI	CATG	8 cut(s)	56, 230, 305, 472, 527, 723, 748, 852
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	8 cut(s)	52, 226, 301, 468, 523, 719, 744, 848
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	437, 659
FokI	GGATG	5 cut(s)	139, 200, 385, 552, 654
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	2 cut(s)	437, 659
GluI	GCNGC	2 cut(s)	437, 659
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	11, 347
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	8 cut(s)	56, 230, 305, 472, 527, 723, 748, 852
HindIII	AAGCTT	4 cut(s)	109, 173, 698, 779
HinfI	GANTC	4 cut(s)	154, 230, 391, 557
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	3 cut(s)	241, 250, 501
Hpy188I	TCNGA	7 cut(s)	29, 47, 208, 424, 562, 590, 832
Hpy188III	TCNNGA	6 cut(s)	158, 524, 672, 692, 704, 745
Hpy8I	GTNNAC	3 cut(s)	241, 250, 501
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	58, 426
HpyCH4V	TGCA	7 cut(s)	217, 337, 388, 439, 543, 566, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 223, 854
HpyF3I	CTNAG	4 cut(s)	44, 257, 421, 871
HpySE526I	ACGT	2 cut(s)	58, 426
Hsp92II	CATG	8 cut(s)	56, 230, 305, 472, 527, 723, 748, 852
Kzo9I	GATC	5 cut(s)	160, 304, 452, 568, 765
LmnI	GCTCC	2 cut(s)	134, 590
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	3 cut(s)	530, 553, 844
MaeII	ACGT	2 cut(s)	58, 426
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	162, 306, 454, 570, 767
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	5 cut(s)	160, 304, 452, 568, 765
MboII	GAAGA	4 cut(s)	60, 155, 458, 898
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	5 cut(s)	23, 104, 396, 573, 825
MlyI	GAGTC	2 cut(s)	148, 566
MmeI	TCCRAC	2 cut(s)	77, 568
MnlI	CCTC	6 cut(s)	15, 22, 190, 202, 668, 882
Mph1103I	ATGCAT	1 cut(s)	850
MseI	TTAA	8 cut(s)	107, 122, 326, 410, 509, 666, 681, 740
MspCI	CTTAAG	2 cut(s)	121, 325
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	549, 806, 909
MvaI	CCWGG	3 cut(s)	549, 806, 909
MwoI	GCNNNNNNNGC	3 cut(s)	80, 223, 854
NdeII	GATC	5 cut(s)	160, 304, 452, 568, 765
NlaIII	CATG	8 cut(s)	56, 230, 305, 472, 527, 723, 748, 852
NlaIV	GGNNCC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	850
NspI	RCATGY	3 cut(s)	56, 472, 852
PagI	TCATGA	2 cut(s)	523, 744
PciI	ACATGT	2 cut(s)	52, 468
PfeI	GAWTC	2 cut(s)	230, 391
PkrI	GCNGC	2 cut(s)	438, 660
PleI	GAGTC	2 cut(s)	148, 565
PpsI	GAGTC	2 cut(s)	148, 565
PpuMI	RGGWCCY	2 cut(s)	211, 631
PscI	ACATGT	2 cut(s)	52, 468
Psp5II	RGGWCCY	2 cut(s)	211, 631
Psp6I	CCWGG	3 cut(s)	547, 804, 907
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	3 cut(s)	547, 804, 907
PspN4I	GGNNCC	1 cut(s)	592
PspPI	GGNCC	3 cut(s)	211, 501, 631
PspPPI	RGGWCCY	2 cut(s)	211, 631
PstI	CTGCAG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	57, 322
RsaNI	GTAC	2 cut(s)	56, 321
SaqAI	TTAA	8 cut(s)	107, 122, 326, 410, 509, 666, 681, 740
SatI	GCNGC	2 cut(s)	437, 659
Sau3AI	GATC	5 cut(s)	160, 304, 452, 568, 765
Sau96I	GGNCC	3 cut(s)	211, 501, 631
SchI	GAGTC	2 cut(s)	148, 566
ScrFI	CCNGG	3 cut(s)	549, 806, 909
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	3 cut(s)	530, 553, 844
SfcI	CTRYAG	1 cut(s)	215
SinI	GGWCC	3 cut(s)	211, 501, 631
SmlI	CTYRAG	2 cut(s)	121, 325
SmoI	CTYRAG	2 cut(s)	121, 325
Sse9I	AATT	5 cut(s)	23, 104, 396, 573, 825
SsiI	CCGC	2 cut(s)	531, 658
SspI	AATATT	1 cut(s)	414
StyD4I	CCNGG	3 cut(s)	547, 804, 907
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	61, 429
TaqI	TCGA	1 cut(s)	273
TasI	AATT	5 cut(s)	23, 104, 396, 573, 825
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	2 cut(s)	230, 391
Tru1I	TTAA	8 cut(s)	107, 122, 326, 410, 509, 666, 681, 740
Tru9I	TTAA	8 cut(s)	107, 122, 326, 410, 509, 666, 681, 740
TscAI	CASTG	2 cut(s)	187, 224
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	5 cut(s)	143, 243, 459, 749, 781
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	187, 224
Vha464I	CTTAAG	2 cut(s)	121, 325
VpaK11BI	GGWCC	3 cut(s)	211, 501, 631
XapI	RAATTY	3 cut(s)	396, 573, 825
XceI	RCATGY	3 cut(s)	56, 472, 852
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.