Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

3947022 .. 3949866

Gene Structure 2845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGCTCTACGTCTTCCTCCCAGATGGTTCAGCTCGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAAAGAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACTGGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTGTTTCTGAAGAGGAAGTCATTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAACACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTTATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCCGTTAAGTACATTGTGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAGGACAAATTTTCTGCTGCGTTGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATAAGGACTCACTTGGTTGGTGGTTATGTGAAAGACAATTAAAGGCTGGGGGCTTAAATGGACGTCCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGATAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTCTGGACTGTCAGGATTTGGACAACGGAGGCATCTCAGACCGACCCGAGGATGCTGTTGATATCTTCCACACCTACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCAGCCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

321

Amino Acids

35.5

Weight (kDa)

5.35

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	13 - 308	1.5e-102	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	679
AciI	CCGC	1 cut(s)	869
AclWI	GGATC	6 cut(s)	117, 251, 369, 382, 761, 905
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	676
AdeI	CACNNNGTG	1 cut(s)	281
AfaI	GTAC	4 cut(s)	54, 288, 422, 491
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	3 cut(s)	510, 535, 892
AluBI	AGCT	7 cut(s)	6, 34, 41, 169, 428, 501, 769
AluI	AGCT	7 cut(s)	6, 34, 41, 169, 428, 501, 769
Alw21I	GWGCWC	3 cut(s)	8, 533, 583
Alw26I	GTCTC	2 cut(s)	443, 605
Alw44I	GTGCAC	1 cut(s)	529
AlwI	GGATC	6 cut(s)	117, 251, 369, 382, 761, 905
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	2 cut(s)	297, 480
ApaLI	GTGCAC	1 cut(s)	529
ApeKI	GCWGC	2 cut(s)	501, 570
ApoI	RAATTY	1 cut(s)	561
AspS9I	GGNCC	2 cut(s)	298, 715
AsuHPI	GGTGA	3 cut(s)	115, 136, 949
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	715
BaeGI	GKGCMC	1 cut(s)	533
BamHI	GGATCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	6
Bbv12I	GWGCWC	3 cut(s)	8, 533, 583
BbvI	GCAGC	2 cut(s)	488, 557
BccI	CCATC	6 cut(s)	19, 61, 100, 365, 509, 612
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	3 cut(s)	512, 537, 894
BciVI	GTATCC	1 cut(s)	900
BcoDI	GTCTC	2 cut(s)	443, 605
BfuI	GTATCC	1 cut(s)	900
BisI	GCNGC	2 cut(s)	502, 571
BlsI	GCNGC	2 cut(s)	503, 572
Bme1390I	CCNGG	3 cut(s)	512, 537, 894
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	298, 715
BmiI	GGNNCC	2 cut(s)	376, 716
BmrFI	CCNGG	3 cut(s)	512, 537, 894
BmrI	ACTGGG	2 cut(s)	145, 603
BmsI	GCATC	2 cut(s)	822, 823
BmuI	ACTGGG	2 cut(s)	145, 603
BpiI	GAAGAC	1 cut(s)	6
BpmI	CTGGAG	2 cut(s)	558, 915
BpuEI	CTTGAG	1 cut(s)	905
BsaHI	GRCGYC	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	828
BsaWI	WCCGGW	1 cut(s)	945
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	4 cut(s)	140, 253, 598, 755
BseBI	CCWGG	3 cut(s)	512, 537, 894
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	2 cut(s)	520, 838
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMII	CTCAG	4 cut(s)	292, 396, 672, 831
BseNI	ACTGG	4 cut(s)	140, 253, 598, 755
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	2 cut(s)	488, 557
BseYI	CCCAGC	1 cut(s)	659
BshFI	GGCC	2 cut(s)	299, 482
BsiHKAI	GWGCWC	3 cut(s)	8, 533, 583
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	2 cut(s)	240, 946
BslFI	GGGAC	2 cut(s)	153, 532
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	2 cut(s)	443, 605
BsmFI	GGGAC	2 cut(s)	153, 532
BsnI	GGCC	2 cut(s)	299, 482
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	3 cut(s)	8, 533, 583
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	5 cut(s)	109, 256, 374, 753, 910
BspACI	CCGC	1 cut(s)	869
BspANI	GGCC	2 cut(s)	299, 482
BspCNI	CTCAG	4 cut(s)	291, 395, 673, 830
BspHI	TCATGA	2 cut(s)	207, 732
BspLI	GGNNCC	2 cut(s)	376, 716
BspPI	GGATC	6 cut(s)	117, 251, 369, 382, 761, 905
BsrFI	RCCGGY	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	4 cut(s)	140, 253, 598, 755
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	5 cut(s)	109, 256, 374, 753, 910
BssNI	GRCGYC	1 cut(s)	676
Bst2UI	CCWGG	3 cut(s)	512, 537, 894
Bst4CI	ACNGT	1 cut(s)	791
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	676
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	6 cut(s)	116, 278, 354, 382, 681, 817
BstF5I	GGATG	2 cut(s)	520, 838
BstKTI	GATC	5 cut(s)	112, 259, 377, 756, 913
BstMAI	GTCTC	2 cut(s)	443, 605
BstMBI	GATC	5 cut(s)	109, 256, 374, 753, 910
BstNI	CCWGG	3 cut(s)	512, 537, 894
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	510, 535, 892
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	488, 557
BstV2I	GAAGAC	1 cut(s)	6
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	2 cut(s)	299, 482
BtsCI	GGATG	2 cut(s)	520, 838
BtsIMutI	CAGTG	4 cut(s)	246, 286, 591, 748
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	2 cut(s)	207, 732
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	298, 715
Csp6I	GTAC	4 cut(s)	53, 287, 421, 490
CviAII	CATG	7 cut(s)	50, 201, 208, 221, 551, 608, 733
CviQI	GTAC	4 cut(s)	53, 287, 421, 490
DdeI	CTNAG	6 cut(s)	116, 278, 354, 382, 681, 817
DpnI	GATC	5 cut(s)	111, 258, 376, 755, 912
DpnII	GATC	5 cut(s)	109, 256, 374, 753, 910
DraIII	CACNNNGTG	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	715
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRII	CCWGG	3 cut(s)	510, 535, 892
EcoRV	GATATC	1 cut(s)	844
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	7 cut(s)	53, 204, 211, 224, 554, 611, 736
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	2 cut(s)	153, 532
FatI	CATG	7 cut(s)	49, 200, 207, 220, 550, 607, 732
FauI	CCCGC	1 cut(s)	862
Fnu4HI	GCNGC	2 cut(s)	502, 571
FokI	GGATG	2 cut(s)	527, 845
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	502, 571
GluI	GCNGC	2 cut(s)	502, 571
GsaI	CCCAGC	1 cut(s)	663
GsuI	CTGGAG	2 cut(s)	558, 915
HaeIII	GGCC	2 cut(s)	299, 482
HapII	CCGG	2 cut(s)	240, 946
Hin1I	GRCGYC	1 cut(s)	676
Hin1II	CATG	7 cut(s)	53, 204, 211, 224, 554, 611, 736
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	7 cut(s)	95, 141, 224, 545, 598, 620, 897
HpaII	CCGG	2 cut(s)	240, 946
HphI	GGTGA	3 cut(s)	115, 136, 949
Hpy166II	GTNNAC	3 cut(s)	531, 748, 943
Hpy188I	TCNGA	3 cut(s)	66, 184, 820
Hpy188III	TCNNGA	9 cut(s)	152, 208, 323, 384, 458, 680, 733, 785, 794
Hpy8I	GTNNAC	3 cut(s)	531, 748, 943
HpyAV	CCTTC	2 cut(s)	388, 472
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	3 cut(s)	11, 55, 676
HpyCH4V	TGCA	5 cut(s)	131, 361, 504, 531, 554
HpyF3I	CTNAG	6 cut(s)	116, 278, 354, 382, 681, 817
HpySE526I	ACGT	3 cut(s)	11, 55, 676
Hsp92I	GRCGYC	1 cut(s)	676
Hsp92II	CATG	7 cut(s)	53, 204, 211, 224, 554, 611, 736
Kzo9I	GATC	5 cut(s)	109, 256, 374, 753, 910
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	2 cut(s)	488, 557
LweI	GCATC	2 cut(s)	822, 823
MaeII	ACGT	3 cut(s)	11, 55, 676
MaeIII	GTNAC	2 cut(s)	56, 242
MalI	GATC	5 cut(s)	111, 258, 376, 755, 912
MboI	GATC	5 cut(s)	109, 256, 374, 753, 910
MboII	GAAGA	5 cut(s)	6, 91, 197, 380, 838
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	3 cut(s)	8, 533, 583
MluCI	AATT	3 cut(s)	561, 650, 906
MlyI	GAGTC	6 cut(s)	104, 135, 554, 607, 614, 906
MnlI	CCTC	6 cut(s)	28, 181, 405, 803, 823, 890
MseI	TTAA	3 cut(s)	486, 653, 668
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	2 cut(s)	240, 946
MspR9I	CCNGG	3 cut(s)	512, 537, 894
MvaI	CCWGG	3 cut(s)	512, 537, 894
NdeII	GATC	5 cut(s)	109, 256, 374, 753, 910
NlaIII	CATG	7 cut(s)	53, 204, 211, 224, 554, 611, 736
NlaIV	GGNNCC	2 cut(s)	376, 716
NmeAIII	GCCGAG	1 cut(s)	150
NspI	RCATGY	1 cut(s)	53
PagI	TCATGA	2 cut(s)	207, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	892
PkrI	GCNGC	2 cut(s)	503, 572
PleI	GAGTC	6 cut(s)	103, 135, 553, 606, 614, 905
PpsI	GAGTC	6 cut(s)	103, 135, 553, 606, 614, 905
PpuMI	RGGWCCY	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	715
Psp6I	CCWGG	3 cut(s)	510, 535, 892
PspFI	CCCAGC	1 cut(s)	659
PspGI	CCWGG	3 cut(s)	510, 535, 892
PspN4I	GGNNCC	2 cut(s)	376, 716
PspPI	GGNCC	2 cut(s)	298, 715
PspPPI	RGGWCCY	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	4 cut(s)	54, 288, 422, 491
RsaNI	GTAC	4 cut(s)	53, 287, 421, 490
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	486, 653, 668
SatI	GCNGC	2 cut(s)	502, 571
Sau3AI	GATC	5 cut(s)	109, 256, 374, 753, 910
Sau96I	GGNCC	2 cut(s)	298, 715
SchI	GAGTC	6 cut(s)	104, 135, 554, 607, 614, 906
ScrFI	CCNGG	3 cut(s)	512, 537, 894
SduI	GDGCHC	3 cut(s)	8, 533, 583
SfaNI	GCATC	2 cut(s)	822, 823
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	3 cut(s)	561, 650, 906
SsiI	CCGC	1 cut(s)	869
SspI	AATATT	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	510, 535, 892
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	3 cut(s)	14, 58, 679
TaqI	TCGA	3 cut(s)	153, 722, 756
TaqII	GACCGA	1 cut(s)	837
TasI	AATT	3 cut(s)	561, 650, 906
TatI	WGTACW	2 cut(s)	286, 489
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	3 cut(s)	486, 653, 668
Tru9I	TTAA	3 cut(s)	486, 653, 668
TscAI	CASTG	4 cut(s)	253, 286, 598, 755
TseI	GCWGC	2 cut(s)	501, 570
TspDTI	ATGAA	5 cut(s)	137, 189, 237, 381, 769
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	4 cut(s)	253, 286, 598, 755
VneI	GTGCAC	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 857
ZraI	GACGTC	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.