Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Forward (+)

61390819 .. 61394821

Gene Structure 4003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0484100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1494 bp

ATGGCTGGAGGAGGCAACAGTAATAGTAATATTACTCCCCAATTGCGCAGAGCTGTTTGCAATTCGAATGTTGAGAGGAGGCCGACATCGACATCGACGCCGTCTCCATCTGTGATAGTGATAGGTGGAGGCATGGCTGGAATTGCAGCTGCTCGTGCTCTCCAAGATGCATCATTCCAGGTTGTGCTGTTGGAGTCTCGGGATCGACTTGGTGGTCGAGTTCACACCGATTACTCGTTTGGTTTTCCGATTGACTTGGGTGCATCATGGTTGCATGGAGTATGTAAAGAGAATCCCTTGGCTCCATTAATCGGGAGACTGGGCTTGCCTTTATATCGAACCAGTGGTGATAACTCTGTGTTGTATGATCATGACTTAGAAAGCTATGCACTCTTTGATATGGATGGAAAACAAGTTCCTCAAGATTTGGTTACAAAAGTTGGTGTAAAATTTGAGGAAATTTTAAAAGAGGCAAATGAGGTAAGAAAGGAACTCTCAGAAGACATGTCCATCACCCGCGCTTTCTCAATTGTCTTTGAAAAGAAACCAGAATTAAGGTTGGAAGGAATTTCCCATAAGGTACTGCAGTGGTATTTGTGCCGAATGGAAGGCTGGTTTGCAGCAGATGCTGATACAATTTCACTTAAAAGCTGGGATCAGGAAGAACTGCTTCCTGGTGGTCACGGTCTTATGGTCAGGGGCTATCGCCCTGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCCTGAGCCACAGGGTGACAAAAATTTTAAGGCGATATAAGGGCGTGATGGTAACAGTAGAGGATGGGAGATCATTTGTTGCAGATGCTGCAATTATTGCTGTTCCTCTCGGTGTGCTTAAGGCAAATGCCATAAAGTTTGAGCCAAAGCTACCCGACTGGAAGGAAGCAGCCATTGCTGACCTTGGAGTGGGAATCGAGAATAAGATAGTGTTGCACTTTGAGAAGGTGTTCTGGCCGAATGTGGAGTTTTTAGGAGTGGTTGCGGAGACATCTTACTGTTGCAGCTACTTTCTAAATCTTCACAAGGCAACTGGTCACTCTGTGCTTGTTTATATGCCTGCAGGGCAGCTGGCCAGAGACATTGAGAAAATGTCCGATGAAGAGGCTGCTAATTTTGCATATATGCAACTCAAGAAGATCCTTCCAGATGCTTCTGATCCGATTCATTTTCTTGTTTCTCACTGGGGAACAGATATAAATTCCCTTGGGTCCTATAGCTATGATATGGTAGGCAAACCCCATGATCTGTATGAGAAGCTAAGGGTCCCGGTAGATAACCTTTTCTTTGCTGGGGAGGCAACAAGCGTGGACTTCCCAGGTTCTGTGCATGGTGCATTTGCTACTGGAGCAATGGCCGCTGAAGACTGCAGGATGCGCGTTCTGGAGCGATACGGTGAGTTGGATTTGTTCGAGCCAGTCATGGGTGAGGGGGTCATGTCTATCCCAATTCAGATCTCCCGCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

497

Amino Acids

54.87

Weight (kDa)

5.69

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	38 - 81	1.4e-06	FAD binding domain
DAO	PF01266	38 - 72	3e-06	FAD dependent oxidoreductase
FAD_oxidored	PF12831	38 - 73	1.7e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	40 - 98	2.7e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	45 - 465	2.4e-96	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	716
AasI	GACNNNNNNGTC	1 cut(s)	213
Acc16I	TGCGCA	1 cut(s)	47
AccII	CGCG	2 cut(s)	519, 1404
AciI	CCGC	4 cut(s)	517, 1010, 1383, 1486
AclWI	GGATC	4 cut(s)	210, 663, 1159, 1178
AcoI	YGGCCR	3 cut(s)	980, 1098, 1380
AcsI	RAATTY	5 cut(s)	449, 459, 567, 768, 1225
AcuI	CTGAAG	1 cut(s)	1407
AcyI	GRCGYC	1 cut(s)	98
AdeI	CACNNNGTG	2 cut(s)	760, 1069
AfaI	GTAC	1 cut(s)	582
AfiI	CCNNNNNNNGG	3 cut(s)	311, 934, 1448
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	1 cut(s)	539
AjnI	CCWGG	3 cut(s)	177, 673, 1342
AloI	GAACNNNNNNTCC	2 cut(s)	399, 431
AluBI	AGCT	9 cut(s)	53, 149, 384, 651, 895, 1032, 1096, 1245, 1285
AluI	AGCT	9 cut(s)	53, 149, 384, 651, 895, 1032, 1096, 1245, 1285
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	5 cut(s)	108, 201, 310, 1007, 1098
AlwI	GGATC	4 cut(s)	210, 663, 1159, 1178
AlwNI	CAGNNNCTG	3 cut(s)	629, 833, 1349
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	4 cut(s)	80, 980, 1098, 1380
ApeKI	GCWGC	8 cut(s)	146, 149, 620, 833, 914, 1029, 1093, 1133
ApoI	RAATTY	5 cut(s)	449, 459, 567, 768, 1225
AseI	ATTAAT	1 cut(s)	308
Asp700I	GAANNNNTTC	2 cut(s)	669, 974
AspLEI	GCGC	3 cut(s)	48, 521, 1404
AspS9I	GGNCC	2 cut(s)	1236, 1291
AsuC2I	CCSGG	1 cut(s)	1295
AsuHPI	GGTGA	5 cut(s)	359, 505, 772, 1433, 1463
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	1236, 1291
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BalI	TGGCCA	1 cut(s)	1100
BauI	CACGAG	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	507, 1395
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	8 cut(s)	136, 158, 632, 820, 926, 1041, 1105, 1120
BccI	CCATC	5 cut(s)	115, 398, 518, 787, 803
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	3 cut(s)	179, 675, 1344
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	1295
BcoDI	GTCTC	5 cut(s)	108, 201, 310, 1007, 1098
BfmI	CTRYAG	4 cut(s)	584, 1086, 1240, 1393
BfrI	CTTAAG	1 cut(s)	863
BglI	GCCNNNNNGGC	1 cut(s)	1090
BglII	AGATCT	1 cut(s)	1479
BisI	GCNGC	9 cut(s)	147, 150, 621, 834, 915, 1030, 1094, 1134, 1383
BlsI	GCNGC	9 cut(s)	148, 151, 622, 835, 916, 1031, 1095, 1135, 1384
Bme1390I	CCNGG	4 cut(s)	179, 675, 1295, 1344
Bme18I	GGWCC	2 cut(s)	1236, 1291
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	1236, 1291
BmiI	GGNNCC	4 cut(s)	303, 1237, 1292, 1293
BmrFI	CCNGG	4 cut(s)	179, 675, 1295, 1344
BmrI	ACTGGG	2 cut(s)	329, 1219
BmsI	GCATC	7 cut(s)	157, 179, 272, 616, 820, 1165, 1389
BmuI	ACTGGG	2 cut(s)	329, 1219
BpiI	GAAGAC	2 cut(s)	507, 1395
BpmI	CTGGAG	3 cut(s)	27, 1392, 1430
Bpu10I	CCTNAGC	2 cut(s)	749, 1286
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	405, 1142
BpuMI	CCSGG	1 cut(s)	1295
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	297, 928, 1231, 1342
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	3 cut(s)	311, 934, 1448
Bse1I	ACTGG	7 cut(s)	324, 342, 908, 1063, 1214, 1375, 1442
Bse3DI	GCAATG	2 cut(s)	918, 1383
BseBI	CCWGG	3 cut(s)	179, 675, 1344
BseDI	CCNNGG	4 cut(s)	297, 928, 1231, 1342
BseGI	GGATG	3 cut(s)	409, 814, 1404
BseLI	CCNNNNNNNGG	3 cut(s)	311, 934, 1448
BseMI	GCAATG	2 cut(s)	918, 1383
BseMII	CTCAG	2 cut(s)	510, 740
BseNI	ACTGG	7 cut(s)	324, 342, 908, 1063, 1214, 1375, 1442
BseRI	GAGGAG	2 cut(s)	24, 91
BseXI	GCAGC	8 cut(s)	136, 158, 632, 820, 926, 1041, 1105, 1120
BseYI	CCCAGC	2 cut(s)	651, 1316
Bsh1236I	CGCG	2 cut(s)	519, 1404
BshFI	GGCC	4 cut(s)	82, 982, 1100, 1382
BsiHKAI	GWGCWC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	1295
BslFI	GGGAC	1 cut(s)	1277
BslI	CCNNNNNNNGG	3 cut(s)	311, 934, 1448
BsmAI	GTCTC	5 cut(s)	108, 201, 310, 1007, 1098
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	1277
BsnI	GGCC	4 cut(s)	82, 982, 1100, 1382
BsoBI	CYCGRG	1 cut(s)	198
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
BspACI	CCGC	4 cut(s)	517, 1010, 1383, 1486
BspANI	GGCC	4 cut(s)	82, 982, 1100, 1382
BspCNI	CTCAG	2 cut(s)	509, 741
BspFNI	CGCG	2 cut(s)	519, 1404
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	4 cut(s)	303, 1237, 1292, 1293
BspMAI	CTGCAG	3 cut(s)	588, 1090, 1397
BspPI	GGATC	4 cut(s)	210, 663, 1159, 1178
BspT104I	TTCGAA	1 cut(s)	65
BspTI	CTTAAG	1 cut(s)	863
BsrDI	GCAATG	2 cut(s)	918, 1383
BsrI	ACTGG	7 cut(s)	324, 342, 908, 1063, 1214, 1375, 1442
BssECI	CCNNGG	4 cut(s)	297, 928, 1231, 1342
BssMI	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	3 cut(s)	297, 928, 1231
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	179, 675, 1344
Bst4CI	ACNGT	5 cut(s)	20, 686, 802, 1025, 1421
Bst6I	CTCTTC	1 cut(s)	1122
BstACI	GRCGYC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	4 cut(s)	626, 833, 842, 920
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	326, 1086, 1098
BstDEI	CTNAG	4 cut(s)	376, 496, 749, 1286
BstF5I	GGATG	3 cut(s)	409, 814, 1404
BstFNI	CGCG	2 cut(s)	519, 1404
BstHHI	GCGC	3 cut(s)	48, 521, 1404
BstKTI	GATC	8 cut(s)	205, 370, 658, 818, 1167, 1186, 1273, 1482
BstMAI	GTCTC	5 cut(s)	108, 201, 310, 1007, 1098
BstMBI	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
BstNI	CCWGG	3 cut(s)	179, 675, 1344
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	4 cut(s)	177, 673, 1293, 1342
BstSFI	CTRYAG	4 cut(s)	584, 1086, 1240, 1393
BstUI	CGCG	2 cut(s)	519, 1404
BstV1I	GCAGC	8 cut(s)	136, 158, 632, 820, 926, 1041, 1105, 1120
BstV2I	GAAGAC	2 cut(s)	507, 1395
BstX2I	RGATCY	2 cut(s)	1164, 1479
BstYI	RGATCY	2 cut(s)	1164, 1479
BsuRI	GGCC	4 cut(s)	82, 982, 1100, 1382
BtsCI	GGATG	3 cut(s)	409, 814, 1404
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	3 cut(s)	349, 593, 1207
Cac8I	GCNNGC	3 cut(s)	326, 1086, 1098
CaiI	CAGNNNCTG	3 cut(s)	629, 833, 1349
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	3 cut(s)	48, 521, 1404
Cfr13I	GGNCC	2 cut(s)	1236, 1291
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	581
CspCI	CAANNNNNGTGG	2 cut(s)	1314, 1349
CviAII	CATG	9 cut(s)	133, 267, 275, 371, 505, 1268, 1355, 1447, 1462
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	4 cut(s)	376, 496, 749, 1286
DpnI	GATC	8 cut(s)	204, 369, 657, 817, 1166, 1185, 1272, 1481
DpnII	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
DraI	TTTAAA	1 cut(s)	465
DraIII	CACNNNGTG	2 cut(s)	760, 1069
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	3 cut(s)	980, 1098, 1380
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Eco130I	CCWWGG	3 cut(s)	297, 928, 1231
Eco47I	GGWCC	2 cut(s)	1236, 1291
Eco57I	CTGAAG	1 cut(s)	1407
Eco88I	CYCGRG	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	1236, 1291
EcoRII	CCWGG	3 cut(s)	177, 673, 1342
EcoT14I	CCWWGG	3 cut(s)	297, 928, 1231
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	3 cut(s)	297, 928, 1231
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	9 cut(s)	136, 270, 278, 374, 508, 1271, 1358, 1450, 1465
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	1277
FatI	CATG	9 cut(s)	132, 266, 274, 370, 504, 1267, 1354, 1446, 1461
FauI	CCCGC	1 cut(s)	524
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	9 cut(s)	147, 150, 621, 834, 915, 1030, 1094, 1134, 1383
FokI	GGATG	3 cut(s)	416, 821, 1411
Fsp4HI	GCNGC	9 cut(s)	147, 150, 621, 834, 915, 1030, 1094, 1134, 1383
FspI	TGCGCA	1 cut(s)	47
GlaI	GCGC	3 cut(s)	47, 520, 1403
GluI	GCNGC	9 cut(s)	147, 150, 621, 834, 915, 1030, 1094, 1134, 1383
GsaI	CCCAGC	2 cut(s)	655, 1320
GsuI	CTGGAG	3 cut(s)	27, 1392, 1430
HaeIII	GGCC	4 cut(s)	82, 982, 1100, 1382
HapII	CCGG	1 cut(s)	1295
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	3 cut(s)	48, 521, 1404
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	9 cut(s)	136, 270, 278, 374, 508, 1271, 1358, 1450, 1465
Hin6I	GCGC	3 cut(s)	46, 519, 1402
HinP1I	GCGC	3 cut(s)	46, 519, 1402
HinfI	GANTC	4 cut(s)	194, 292, 939, 1189
HpaII	CCGG	1 cut(s)	1295
HphI	GGTGA	5 cut(s)	359, 505, 772, 1433, 1463
Hpy166II	GTNNAC	2 cut(s)	223, 1336
Hpy188I	TCNGA	6 cut(s)	249, 499, 1123, 1183, 1188, 1479
Hpy8I	GTNNAC	2 cut(s)	223, 1336
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	5 cut(s)	557, 602, 901, 964, 1178
HpyCH4III	ACNGT	5 cut(s)	20, 686, 802, 1025, 1421
HpyF3I	CTNAG	4 cut(s)	376, 496, 749, 1286
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	9 cut(s)	136, 270, 278, 374, 508, 1271, 1358, 1450, 1465
HspAI	GCGC	3 cut(s)	46, 519, 1402
KflI	GGGWCCC	1 cut(s)	1291
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
LmnI	GCTCC	3 cut(s)	307, 1373, 1411
Lsp1109I	GCAGC	8 cut(s)	136, 158, 632, 820, 926, 1041, 1105, 1120
LweI	GCATC	7 cut(s)	157, 179, 272, 616, 820, 1165, 1389
MaeIII	GTNAC	5 cut(s)	430, 680, 760, 796, 1061
MalI	GATC	8 cut(s)	204, 369, 657, 817, 1166, 1185, 1272, 1481
MboI	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
MboII	GAAGA	6 cut(s)	512, 674, 1037, 1139, 1174, 1400
MfeI	CAATTG	2 cut(s)	41, 528
MflI	RGATCY	2 cut(s)	1164, 1479
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	1100
MluNI	TGGCCA	1 cut(s)	1100
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	3 cut(s)	171, 540, 1407
Mox20I	TGGCCA	1 cut(s)	1100
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	2 cut(s)	669, 974
MscI	TGGCCA	1 cut(s)	1100
MseI	TTAA	6 cut(s)	308, 464, 554, 645, 773, 864
Msp20I	TGGCCA	1 cut(s)	1100
MspA1I	CMGCKG	3 cut(s)	149, 1096, 1385
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	1 cut(s)	1295
MspR9I	CCNGG	4 cut(s)	179, 675, 1295, 1344
MunI	CAATTG	2 cut(s)	41, 528
MvaI	CCWGG	3 cut(s)	179, 675, 1344
MvnI	CGCG	2 cut(s)	519, 1404
NciI	CCSGG	1 cut(s)	1295
NdeII	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
NlaIII	CATG	9 cut(s)	136, 270, 278, 374, 508, 1271, 1358, 1450, 1465
NlaIV	GGNNCC	4 cut(s)	303, 1237, 1292, 1293
NmuCI	GTSAC	3 cut(s)	680, 760, 1061
NsbI	TGCGCA	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	1 cut(s)	508
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	370
PciI	ACATGT	1 cut(s)	504
PdmI	GAANNNNTTC	2 cut(s)	669, 974
PfeI	GAWTC	3 cut(s)	292, 939, 1189
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	9 cut(s)	148, 151, 622, 835, 916, 1031, 1095, 1135, 1384
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PpuMI	RGGWCCY	2 cut(s)	1236, 1291
PscI	ACATGT	1 cut(s)	504
PshBI	ATTAAT	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	716
Psp5II	RGGWCCY	2 cut(s)	1236, 1291
Psp6I	CCWGG	3 cut(s)	177, 673, 1342
PspFI	CCCAGC	2 cut(s)	651, 1316
PspGI	CCWGG	3 cut(s)	177, 673, 1342
PspN4I	GGNNCC	4 cut(s)	303, 1237, 1292, 1293
PspPI	GGNCC	2 cut(s)	1236, 1291
PspPPI	RGGWCCY	2 cut(s)	1236, 1291
PstI	CTGCAG	3 cut(s)	588, 1090, 1397
PstNI	CAGNNNCTG	3 cut(s)	629, 833, 1349
PsuI	RGATCY	2 cut(s)	1164, 1479
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	2 cut(s)	149, 1096
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SaqAI	TTAA	6 cut(s)	308, 464, 554, 645, 773, 864
SatI	GCNGC	9 cut(s)	147, 150, 621, 834, 915, 1030, 1094, 1134, 1383
Sau3AI	GATC	8 cut(s)	202, 367, 655, 815, 1164, 1183, 1270, 1479
Sau96I	GGNCC	2 cut(s)	1236, 1291
SbfI	CCTGCAGG	1 cut(s)	1090
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	4 cut(s)	179, 675, 1295, 1344
SdaI	CCTGCAGG	1 cut(s)	1090
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	7 cut(s)	157, 179, 272, 616, 820, 1165, 1389
SfcI	CTRYAG	4 cut(s)	584, 1086, 1240, 1393
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	1236, 1291
SmlI	CTYRAG	3 cut(s)	420, 863, 1157
SmoI	CTYRAG	3 cut(s)	420, 863, 1157
Sse8387I	CCTGCAGG	1 cut(s)	1090
SsiI	CCGC	4 cut(s)	517, 1010, 1383, 1486
SspI	AATATT	1 cut(s)	31
StyD4I	CCNGG	4 cut(s)	177, 673, 1293, 1342
StyI	CCWWGG	3 cut(s)	297, 928, 1231
TaaI	ACNGT	5 cut(s)	20, 686, 802, 1025, 1421
TaqI	TCGA	8 cut(s)	65, 89, 95, 205, 217, 337, 942, 1437
TauI	GCSGC	1 cut(s)	1385
TfiI	GAWTC	3 cut(s)	292, 939, 1189
Tru1I	TTAA	6 cut(s)	308, 464, 554, 645, 773, 864
Tru9I	TTAA	6 cut(s)	308, 464, 554, 645, 773, 864
TscAI	CASTG	3 cut(s)	349, 593, 1214
TseFI	GTSAC	3 cut(s)	680, 760, 1061
TseI	GCWGC	8 cut(s)	146, 149, 620, 833, 914, 1029, 1093, 1133
Tsp45I	GTSAC	3 cut(s)	680, 760, 1061
TspDTI	ATGAA	2 cut(s)	1140, 1181
TspRI	CASTG	3 cut(s)	349, 593, 1214
Tth111I	GACNNNGTC	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	2 cut(s)	1236, 1291
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	5 cut(s)	449, 459, 567, 768, 1225
XceI	RCATGY	1 cut(s)	508
XmnI	GAANNNNTTC	2 cut(s)	669, 974
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.