Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000997

Physical Location & Seq

Genomic Coordinates Reverse (-)

16993968 .. 16994329

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G111600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGGGAGCTGGCAAGTCAGAAACATGTTCAGTTCATTGTATTAGTCGAAAAGAAGAAGGATTCTTTTGAGTCCGTGGTGATGGAGCATATAAGAATGAATGGGGCATATTGGGCTGCACGTCAAGATGACTCAGGTGGGTTTGGTGGTAACATTGGGCATGACCCACATGTACTATATACCTTAAGTGCTGTGCAGGTTTTGGCCTTGTTCGACAAGCTTGATGTTCTGGATATTGAAAAGGTTGCGAGTTATACCACACACCAGCCTTCACATGTTTTGGATCAGCGGATGATGATGAGGTTTTCTCCAGTCGGCAAGGACAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007275 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009555 GO:0009987 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0022622 GO:0031267 GO:0032501 GO:0032502 GO:0032991 GO:0036211 GO:0042981 GO:0043067 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050877 GO:0050953 GO:0051020 GO:0065007 GO:0071704 GO:0071944 GO:0097354 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

111

Amino Acids

12.43

Weight (kDa)

6.04

Isoelectric Point (pI)

28.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12070 AT3G12070 AT3G12070 AT3G12070 AT5G12210 AT5G12210
fragaria_vesca	FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_6g43850 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690 FvH4_7g02690
malus_domestica	MD06G1221400.v1.1 MD09G1102700.v1.1 MD14G1230700.v1.1
prunus_persica	Prupe.2G111600_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.3G223100_v2.0.a1 Prupe.5G225800_v2.0.a1
pyrus_communis	pycom09g02600
rosa_chinensis	RchiOBHm_Chr2g0160601 RchiOBHm_Chr5g0048191 RchiOBHm_Chr7g0226631
rosa_laevigata	RLG00000001712 RLG00000021225
rosa_multiflora	Rmu_sc0000674.1_g000024 Rmu_sc0001408.1_g000016 Rmu_sc0002043.1_g000005 Rmu_sc0004294.1_g000001 Rmu_ssc0000158.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033730 Rroxscaffold_2G00089590 Rroxscaffold_3G00232640 Rroxscaffold_4G00330290
rosa_rugosa	Rorug02G0484000 Rorug02G0484100 Rorug02G0484100 Rorug07G0238800 Rorug07G0238900
rosa_samantha	Rh2AG549300 Rh2BG563500 Rh2DG572600 Rh5AG316100 Rh5BG326700 Rh5DG337700 Rh7AG386300 Rh7CG405600 Rh7DG385000
rosa_wichuraiana	Rw0G007110 Rw2G012100 Rw2G045490 Rw5G029630 Rw6G022830 Rw7G032430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	174
AflII	CTTAAG	1 cut(s)	184
AflIII	ACRYGT	3 cut(s)	25, 169, 274
AgsI	TTSAA	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	122
AluBI	AGCT	2 cut(s)	10, 220
AluI	AGCT	2 cut(s)	10, 220
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	76
BfrI	CTTAAG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpmI	CTGGAG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	2 cut(s)	102, 215
BshFI	GGCC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	291
BspTI	CTTAAG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	3 cut(s)	29, 173, 278
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	4 cut(s)	26, 161, 170, 275
CviJI	RGCY	5 cut(s)	10, 116, 206, 220, 268
CviKI_1	RGCY	5 cut(s)	10, 116, 206, 220, 268
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
FaeI	CATG	4 cut(s)	29, 164, 173, 278
FatI	CATG	4 cut(s)	25, 160, 169, 274
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	206
Hin1II	CATG	4 cut(s)	29, 164, 173, 278
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	62, 71, 131
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	125, 230
HpyAV	CCTTC	2 cut(s)	52, 279
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	119, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	4 cut(s)	29, 164, 173, 278
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	7, 85
LpnPI	CCDG	5 cut(s)	120, 182, 215, 278, 324
Lsp1109I	GCAGC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	67
MlyI	GAGTC	2 cut(s)	80, 125
MnlI	CCTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	289
MspCI	CTTAAG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	29, 164, 173, 278
NspI	RCATGY	3 cut(s)	29, 173, 278
PciI	ACATGT	3 cut(s)	25, 169, 274
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	79, 125
PpsI	GAGTC	2 cut(s)	79, 125
PscI	ACATGT	3 cut(s)	25, 169, 274
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	80, 125
SetI	ASST	8 cut(s)	12, 124, 139, 185, 201, 222, 246, 305
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SsiI	CCGC	1 cut(s)	289
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	48, 213
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	25, 113
TspGWI	ACGGA	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	184
XceI	RCATGY	3 cut(s)	29, 173, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.