Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

6744377 .. 6747238

Gene Structure 2862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGAAGTGTAGAAGCAGGAGAAAAGAAGGCTTTAGGATGGGCTGCAAGAGATCCTTCTGGTGTTCTCTCTCCTTACTCCTACACTTTAAGGAGCACAGGAGCAGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATATTCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGTAGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGTCGGAGTCGGCGTGGTCGTTGGATGCTGCGGTAGCTGCAAACCATGCAGCTCAGAACTTGAGCAGTATTGTAACAAGAGAATCTGGAGTTACAACGATGTCTACACCGATGGAAAACCTACTCAAGGTGGCTTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAACGGTTTATAGTCCGTTGAGCCACTTCGGTCTAATGGCGAGTGGGCTTAAAGGAGGGATTCTAGGGTTAGGTGGAGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCATGTGACTGTGATAAGCTCATCAGATAAGAAAAAAGAAGAAGCTATCGAACATTTAGGAGCTGACGACTATGTGGTGAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCCCTTGACTACATCATTGACACCGTACCGGTGTTTCACCCTCTCGACCCTTACTTGGCTTGTCTTAAACTCGACGGGAAATTGATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCGTGACCCCTCTCGTCATTCTTGGGAGGAAAGTGATATCAGGGAGCTTTATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGCTTTCTGCAAAGAGAAAGGGCTTACGTCGACGATTGAAACTGTGAAGATCGATGAGCTTAACATTGCGTTTGAGAGGCTTCGCAAGAACGATGTTCGTTACAGATTTGTGGTTGATGTTGCAGGAAGTAATCTGGTGGAGGAGGCTGCAACAACTACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

365

Amino Acids

39.1

Weight (kDa)

5.33

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	34 - 152	7.1e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	192 - 315	4.2e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	375, 962
AccII	CGCG	1 cut(s)	494
AciI	CCGC	4 cut(s)	303, 464, 482, 494
AclWI	GGATC	3 cut(s)	47, 247, 698
AcuI	CTGAAG	1 cut(s)	830
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	1 cut(s)	759
AfiI	CCNNNNNNNGG	2 cut(s)	398, 787
AgeI	ACCGGT	1 cut(s)	760
AgsI	TTSAA	1 cut(s)	971
AjnI	CCWGG	1 cut(s)	202
AleI	CACNNNNGTG	1 cut(s)	588
AluBI	AGCT	9 cut(s)	309, 324, 602, 636, 662, 680, 699, 897, 991
AluI	AGCT	9 cut(s)	309, 324, 602, 636, 662, 680, 699, 897, 991
Alw21I	GWGCWC	2 cut(s)	98, 701
Alw26I	GTCTC	1 cut(s)	911
AlwI	GGATC	3 cut(s)	47, 247, 698
ApeKI	GCWGC	6 cut(s)	44, 300, 309, 321, 476, 1079
AsiGI	ACCGGT	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	494
AsuHPI	GGTGA	6 cut(s)	149, 233, 250, 454, 706, 761
BaeGI	GKGCMC	2 cut(s)	210, 585
BanII	GRGCYC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	98, 701
BbvI	GCAGC	6 cut(s)	31, 287, 296, 333, 463, 1066
BccI	CCATC	2 cut(s)	33, 377
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	1 cut(s)	563
BisI	GCNGC	6 cut(s)	45, 301, 310, 322, 477, 1080
BlsI	GCNGC	6 cut(s)	46, 302, 311, 323, 478, 1081
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	2 cut(s)	287, 705
BpmI	CTGGAG	1 cut(s)	379
BpuEI	CTTGAG	2 cut(s)	353, 381
Bsa29I	ATCGAT	1 cut(s)	984
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	6 cut(s)	258, 270, 288, 300, 489, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 787
Bse118I	RCCGGY	1 cut(s)	760
Bse3DI	GCAATG	2 cut(s)	615, 996
BseBI	CCWGG	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	2 cut(s)	44, 302
BseLI	CCNNNNNNNGG	2 cut(s)	398, 787
BseMI	GCAATG	2 cut(s)	615, 996
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	2 cut(s)	831, 1088
BseSI	GKGCMC	2 cut(s)	210, 585
BseXI	GCAGC	6 cut(s)	31, 287, 296, 333, 463, 1066
BsgI	GTGCAG	1 cut(s)	462
Bsh1236I	CGCG	1 cut(s)	494
BshTI	ACCGGT	1 cut(s)	760
BshVI	ATCGAT	1 cut(s)	984
BsiHKAI	GWGCWC	2 cut(s)	98, 701
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	2 cut(s)	398, 787
BsmAI	GTCTC	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	627
Bsp1286I	GDGCHC	4 cut(s)	98, 210, 585, 701
Bsp143I	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
BspACI	CCGC	4 cut(s)	303, 464, 482, 494
BspCNI	CTCAG	1 cut(s)	338
BspDI	ATCGAT	1 cut(s)	984
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	47, 247, 698
BsrDI	GCAATG	2 cut(s)	615, 996
BsrFI	RCCGGY	1 cut(s)	760
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	262, 505, 628, 757, 976
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	325
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	44, 302
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	6 cut(s)	55, 175, 242, 423, 706, 984
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 309, 318
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	2 cut(s)	210, 585
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	6 cut(s)	31, 287, 296, 333, 463, 1066
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	984
BsuTUI	ATCGAT	1 cut(s)	984
BtsCI	GGATG	2 cut(s)	44, 302
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	760
ClaI	ATCGAT	1 cut(s)	984
Csp6I	GTAC	1 cut(s)	758
CspAI	ACCGGT	1 cut(s)	760
CviAII	CATG	5 cut(s)	318, 418, 586, 620, 823
CviQI	GTAC	1 cut(s)	758
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	6 cut(s)	54, 174, 241, 422, 705, 983
DpnII	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
DraIII	CACNNNGTG	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Ecl136II	GAGCTC	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	888
Eco53kI	GAGCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	699
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	888
EcoT38I	GRGCYC	1 cut(s)	701
FaeI	CATG	5 cut(s)	321, 421, 589, 623, 826
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	5 cut(s)	317, 417, 585, 619, 822
FauI	CCCGC	1 cut(s)	487
FblI	GTMKAC	2 cut(s)	375, 962
Fnu4HI	GCNGC	6 cut(s)	45, 301, 310, 322, 477, 1080
FokI	GGATG	2 cut(s)	51, 309
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	6 cut(s)	45, 301, 310, 322, 477, 1080
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	6 cut(s)	45, 301, 310, 322, 477, 1080
GsuI	CTGGAG	1 cut(s)	379
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	321, 421, 589, 623, 826
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HinfI	GANTC	7 cut(s)	279, 354, 448, 559, 723, 731, 817
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	6 cut(s)	149, 233, 250, 454, 706, 761
Hpy166II	GTNNAC	3 cut(s)	258, 376, 963
Hpy188I	TCNGA	5 cut(s)	244, 278, 328, 643, 703
Hpy188III	TCNNGA	4 cut(s)	358, 452, 776, 853
Hpy8I	GTNNAC	3 cut(s)	258, 376, 963
Hpy99I	CGWCG	3 cut(s)	809, 964, 967
HpyAV	CCTTC	3 cut(s)	22, 66, 449
HpyCH4III	ACNGT	5 cut(s)	262, 505, 628, 757, 976
HpyCH4IV	ACGT	1 cut(s)	959
HpyCH4V	TGCA	8 cut(s)	47, 312, 321, 479, 718, 942, 1055, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 309, 318
HpyF3I	CTNAG	1 cut(s)	325
HpySE526I	ACGT	1 cut(s)	959
Hsp92II	CATG	5 cut(s)	321, 421, 589, 623, 826
HspAI	GCGC	1 cut(s)	492
Kzo9I	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
LmnI	GCTCC	6 cut(s)	93, 101, 469, 677, 894, 906
Lsp1109I	GCAGC	6 cut(s)	31, 287, 296, 333, 463, 1066
LweI	GCATC	2 cut(s)	287, 705
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	959
MaeIII	GTNAC	6 cut(s)	344, 362, 499, 622, 853, 1031
MalI	GATC	6 cut(s)	54, 174, 241, 422, 705, 983
MboI	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
MboII	GAAGA	6 cut(s)	457, 607, 668, 836, 935, 991
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	4 cut(s)	98, 210, 585, 701
MluCI	AATT	3 cut(s)	162, 187, 812
MlyI	GAGTC	2 cut(s)	288, 717
MmeI	TCCRAC	3 cut(s)	210, 256, 274
MseI	TTAA	6 cut(s)	89, 165, 549, 798, 912, 993
MslI	CAYNNNNRTG	2 cut(s)	588, 590
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	306, 309, 318
NdeII	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
NlaIII	CATG	5 cut(s)	321, 421, 589, 623, 826
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	622, 853
OliI	CACNNNNGTG	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 288
PfeI	GAWTC	5 cut(s)	354, 448, 559, 731, 817
PinAI	ACCGGT	1 cut(s)	760
PkrI	GCNGC	6 cut(s)	46, 302, 311, 323, 478, 1081
PleI	GAGTC	2 cut(s)	287, 717
PpsI	GAGTC	2 cut(s)	287, 717
Psp124BI	GAGCTC	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	759
RsaNI	GTAC	1 cut(s)	758
RseI	CAYNNNNRTG	2 cut(s)	588, 590
SacI	GAGCTC	1 cut(s)	701
SalI	GTCGAC	1 cut(s)	961
SaqAI	TTAA	6 cut(s)	89, 165, 549, 798, 912, 993
SatI	GCNGC	6 cut(s)	45, 301, 310, 322, 477, 1080
Sau3AI	GATC	6 cut(s)	52, 172, 239, 420, 703, 981
SchI	GAGTC	2 cut(s)	288, 717
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	4 cut(s)	98, 210, 585, 701
SfaNI	GCATC	2 cut(s)	287, 705
SgrDI	CGTCGACG	1 cut(s)	961
SmiMI	CAYNNNNRTG	2 cut(s)	588, 590
SmlI	CTYRAG	2 cut(s)	332, 396
SmoI	CTYRAG	2 cut(s)	332, 396
Sse9I	AATT	3 cut(s)	162, 187, 812
SsiI	CCGC	4 cut(s)	303, 464, 482, 494
SspMI	CTAG	1 cut(s)	563
SstI	GAGCTC	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	5 cut(s)	262, 505, 628, 757, 976
TaiI	ACGT	1 cut(s)	962
TaqI	TCGA	5 cut(s)	666, 777, 804, 962, 984
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	162, 187, 812
TfiI	GAWTC	5 cut(s)	354, 448, 559, 731, 817
Tru1I	TTAA	6 cut(s)	89, 165, 549, 798, 912, 993
Tru9I	TTAA	6 cut(s)	89, 165, 549, 798, 912, 993
TseFI	GTSAC	2 cut(s)	622, 853
TseI	GCWGC	6 cut(s)	44, 300, 309, 321, 476, 1079
Tsp45I	GTSAC	2 cut(s)	622, 853
TspGWI	ACGGA	1 cut(s)	504
XagI	CCTNNNNNAGG	1 cut(s)	396
XmiI	GTMKAC	2 cut(s)	375, 962
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.