Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

10337189 .. 10338233

Gene Structure 1045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGAGCCGGAGCAGGTGGCGCCGCTGCTTTGTGCGGGAGTGACAATTTACAGCCCACTGAGGCACTTTGGTCTGGATGTGAGTGGATTAAGGGGAGGAATATTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCAAAGGCCATGGGACACCATATCACTGTGATAAGCTCTTCCGATAAGAAGAGACAAGAGGCTTTAGAGGATATTGGTGCTGATGAGTACTTGGTGAGCTCTGATGTCACCAAAATGCAAGAGGCTATGGACTCAATGGATTACATTATTGACACTATTCCTGTGTTCCACCCTCTTGAGCCTTACCTCTCTTTGTTGAAACTTGATGGGAAATTGATCTTGATGGGTGTTATCAACACCCCTTTGCAATTTGTCTCTCCATTGGTCATGCTTGGGAGGAAGACAATCACCGGGAGCTTTGTGGGGAGCATGAAGGAGATGGAGGAAATGCTCGAGTTCTGCAAAGAGAAAGGACTAAAATCGATGATCGAAGTGGTTAAGATGGACTACATCAACGAAGCCTTCGAAAGGTTGGAGAAGAACGACGTTAGGTACAGGTTCGTTGTGGACGTTGCGGGCAGCAATCTGGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

205

Amino Acids

22.67

Weight (kDa)

5.15

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	39 - 162	1.2e-24	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	3 cut(s)	23, 35, 596
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	230, 575
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	3 cut(s)	177, 240, 438
AluI	AGCT	3 cut(s)	177, 240, 438
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	2 cut(s)	187, 400
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	25, 600
AspLEI	GCGC	1 cut(s)	22
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	4 cut(s)	145, 241, 247, 421
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	12, 612
BccI	CCATC	4 cut(s)	341, 358, 454, 517
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	187, 400
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	4
BisI	GCNGC	3 cut(s)	23, 26, 601
BlsI	GCNGC	3 cut(s)	24, 27, 602
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	6, 21
BmrFI	CCNGG	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	428
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	433
Bsa29I	ATCGAT	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	50
BseXI	GCAGC	2 cut(s)	12, 612
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	8, 432
BslFI	GGGAC	3 cut(s)	120, 135, 168
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	2 cut(s)	187, 400
BsmFI	GGGAC	3 cut(s)	120, 135, 168
BsnI	GGCC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	357, 507, 610
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	3 cut(s)	23, 35, 596
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	6, 21
BspMI	ACCTGC	1 cut(s)	4
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	357, 507, 610
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	184, 185
BstACI	GRCGYC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	3 cut(s)	360, 510, 613
BstMAI	GTCTC	2 cut(s)	187, 400
BstMBI	GATC	3 cut(s)	357, 507, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	431
BstV1I	GCAGC	2 cut(s)	12, 612
BstV2I	GAAGAC	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	149
BsuTUI	ATCGAT	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	56, 165
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	598
CfoI	GCGC	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	229, 574
CviAII	CATG	4 cut(s)	127, 151, 409, 451
CviQI	GTAC	2 cut(s)	229, 574
DdeI	CTNAG	1 cut(s)	59
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	3 cut(s)	359, 509, 612
DpnII	GATC	3 cut(s)	357, 507, 610
Eam1104I	CTCTTC	2 cut(s)	184, 185
EarI	CTCTTC	2 cut(s)	184, 185
Ecl136II	GAGCTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	242
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	130, 154, 412, 454
FaiI	YATR	6 cut(s)	128, 152, 162, 269, 410, 452
FaqI	GGGAC	3 cut(s)	120, 135, 168
FatI	CATG	4 cut(s)	126, 150, 408, 450
FauI	CCCGC	2 cut(s)	28, 589
Fnu4HI	GCNGC	3 cut(s)	23, 26, 601
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	23, 26, 601
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	3 cut(s)	23, 26, 601
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	8, 432
HhaI	GCGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	130, 154, 412, 454
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	2 cut(s)	8, 432
HphI	GGTGA	4 cut(s)	145, 241, 247, 421
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	184, 244
Hpy188III	TCNNGA	4 cut(s)	74, 317, 361, 608
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	2 cut(s)	448, 553
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	567, 591
HpyCH4V	TGCA	3 cut(s)	259, 388, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	2 cut(s)	567, 591
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	130, 154, 412, 454
HspAI	GCGC	1 cut(s)	20
KasI	GGCGCC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	357, 507, 610
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	4 cut(s)	4, 10, 435, 447
LpnPI	CCDG	6 cut(s)	21, 59, 315, 445, 562, 593
Lsp1109I	GCAGC	2 cut(s)	12, 612
MaeII	ACGT	2 cut(s)	567, 591
MaeIII	GTNAC	2 cut(s)	40, 247
MalI	GATC	3 cut(s)	359, 509, 612
MboI	GATC	3 cut(s)	357, 507, 610
MboII	GAAGA	5 cut(s)	148, 171, 202, 433, 571
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	3 cut(s)	45, 353, 389
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	534
MseI	TTAA	2 cut(s)	89, 519
MslI	CAYNNNNRTG	2 cut(s)	131, 254
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	8, 432
MspR9I	CCNGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	20
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	357, 507, 610
NlaIII	CATG	4 cut(s)	130, 154, 412, 454
NlaIV	GGNNCC	2 cut(s)	6, 21
NmuCI	GTSAC	2 cut(s)	40, 247
NspV	TTCGAA	1 cut(s)	546
PaeR7I	CTCGAG	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	2 cut(s)	543, 588
PkrI	GCNGC	3 cut(s)	24, 27, 602
PleI	GAGTC	1 cut(s)	266
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	6, 21
PspXI	VCTCGAGB	1 cut(s)	473
RsaI	GTAC	2 cut(s)	230, 575
RsaNI	GTAC	2 cut(s)	229, 574
RseI	CAYNNNNRTG	2 cut(s)	131, 254
SacI	GAGCTC	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	89, 519
SatI	GCNGC	3 cut(s)	23, 26, 601
Sau3AI	GATC	3 cut(s)	357, 507, 610
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	242
SfoI	GGCGCC	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	131, 254
SmlI	CTYRAG	2 cut(s)	317, 473
SmoI	CTYRAG	2 cut(s)	317, 473
Sse9I	AATT	3 cut(s)	45, 353, 389
SsiI	CCGC	3 cut(s)	23, 35, 596
SspDI	GGCGCC	1 cut(s)	19
SspI	AATATT	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	570, 594
TaqI	TCGA	4 cut(s)	474, 503, 510, 546
TasI	AATT	3 cut(s)	45, 353, 389
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	89, 519
Tru9I	TTAA	2 cut(s)	89, 519
TscAI	CASTG	2 cut(s)	63, 172
TseFI	GTSAC	2 cut(s)	40, 247
TseI	GCWGC	2 cut(s)	25, 600
Tsp45I	GTSAC	2 cut(s)	40, 247
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	2 cut(s)	63, 172
XagI	CCTNNNNNAGG	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.