pycom05g08890

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
11664365 .. 11666366
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08890.4

Sequence Viewer

Length: 1236 bp
ATGGCTTTGTTTCTCCTACCTGTATATTTATTTATATGCTTCATTTGCGTTTCTGATTCCCCAAAAGCCAAAACCCACTTTTCCAATACACTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCCCCCCGAAACACATTCGGAAGGAAAAATGGGCAGCCTTGAAGCGGAGAGAACGACTAGAGGATGGGCAGCAAGAGACTCATCTGGAATTCTCTCACCCTACACCTACAATCTCAGGAACACAGGGCCAGAAGATGTTTACGTCAAGGTTCTCTGCTGTGGAGTTTGCCACTCGGATCTTCACCAGATCAAAAATGACCTTGGCATGTCAAATTATCCCATGGTTCCCGGGCATGAGGTGGTTGGTGAGGTGGTGGAGGTGGGATCAGATGTGACCAAGTTCAGAGCAGGAGATGTGGTTGGAGTTGGCCTCCTTGTTGGATGCTGCAGAAACTGCAACCCGTGCAAAACGGACAACGAGCAGTACTGCAACAAGAAAATCTGGTCTTACAATGATACTTACACCGACGGCAAAACCACCCAAGGCGGCTTTGCTGGGGCCCTCGTCGCTGATCAAAAATTTGTGGTGAAGATACCGGAGGGCATGGTACCCGAACAGGCAGCGCCGCTGCTGTGCGCCGGCGTGACGGTGTACAGCCCGCTGAAGCACTTTGGCCTGAATGTGAGTGGGTTAAGAGGAGGAATATTGGGGCTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCAAAGGCCATGGGGCACCATGTGACTGTGATAAGCTCATCGGATAGGAAAAGAGAGGAGGCTTTGGAGCATATTGGGGCTGATGAGTTCTTGGTTAGCACTGATGGCACCAAAATGCAGGAAGCTGCTGACTCATTGGACTACATCATTGACACAGTTCCTGTGGGCCACCCACTTGAGCCTTACCTCTCTTTGTTAAAGCTTGATGGGAAATTGATCTTGATGGGTGTAATTAACACCCCATTACAATTTGTCTCCCCAATGGTCATGCTTGGGAGAAAGAAAATCACAGGGAGCTTCGTGGGGAGCATGAAGGAAACTGAGGAGATGCTTGAGTTTTGCAAAGAGAAAGGATTAACATCAATGATTGAAGTGGTCAAGATGGATTACATCAACACAGCCTTTGAAAGGTTGGAGAAGAACGACGTTAGGTACAGGTTCGTTGTGGATGTGGCCGGCAGCAACCTTATTGAATAA

Protein Analysis

412

Amino Acids

44.67

Weight (kDa)

5.81

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 622
AccB1I GGYRCC 3 cut(s) 622, 774, 866
AciI CCGC 4 cut(s) 179, 561, 641, 674
AclWI GGATC 2 cut(s) 318, 406
AcoI YGGCCR 1 cut(s) 1212
AcsI RAATTY 2 cut(s) 222, 593
AcuI CTGAAG 1 cut(s) 698
AdeI CACNNNGTG 1 cut(s) 781
AfaI GTAC 4 cut(s) 500, 624, 668, 1193
AfiI CCNNNNNNNGG 2 cut(s) 178, 1167
AgsI TTSAA 4 cut(s) 176, 1130, 1166, 1232
AluBI AGCT 4 cut(s) 795, 884, 961, 1056
AluI AGCT 4 cut(s) 795, 884, 961, 1056
Alw26I GTCTC 2 cut(s) 204, 1018
AlwI GGATC 2 cut(s) 318, 406
AlwNI CAGNNNCTG 2 cut(s) 468, 920
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 7 cut(s) 260, 442, 573, 688, 765, 925, 1212
ApaI GGGCCC 1 cut(s) 577
ApeKI GCWGC 7 cut(s) 168, 203, 459, 635, 643, 884, 1218
ApoI RAATTY 2 cut(s) 222, 593
Asp718I GGTACC 1 cut(s) 622
AspLEI GCGC 2 cut(s) 640, 653
AspS9I GGNCC 4 cut(s) 260, 573, 574, 925
AsuC2I CCSGG 2 cut(s) 363, 364
AsuHPI GGTGA 5 cut(s) 222, 308, 392, 613, 763
AvaI CYCGRG 1 cut(s) 362
BaeGI GKGCMC 2 cut(s) 577, 777
BanI GGYRCC 3 cut(s) 622, 774, 866
BanII GRGCYC 1 cut(s) 577
BbvI GCAGC 7 cut(s) 180, 215, 446, 630, 647, 871, 1230
BccI CCATC 5 cut(s) 192, 857, 959, 976, 1135
BceAI ACGGC 1 cut(s) 559
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 2 cut(s) 363, 364
BcoDI GTCTC 2 cut(s) 204, 1018
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 641
BisI GCNGC 9 cut(s) 169, 204, 460, 562, 636, 641, 644, 885, 1219
BlsI GCNGC 9 cut(s) 170, 205, 461, 563, 637, 642, 645, 886, 1220
BmcAI AGTACT 1 cut(s) 500
Bme1390I CCNGG 2 cut(s) 363, 364
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 4 cut(s) 260, 573, 574, 925
BmiI GGNNCC 6 cut(s) 360, 574, 575, 624, 776, 868
BmrFI CCNGG 2 cut(s) 363, 364
BmsI GCATC 2 cut(s) 446, 1077
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpuEI CTTGAG 2 cut(s) 956, 1112
BpuMI CCSGG 2 cut(s) 363, 364
BsaBI GATNNNNATC 1 cut(s) 1117
BsaJI CCNNGG 5 cut(s) 334, 354, 362, 556, 768
BsaWI WCCGGW 1 cut(s) 610
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 1167
Bse118I RCCGGY 2 cut(s) 653, 1214
Bse8I GATNNNNATC 1 cut(s) 1117
BseDI CCNNGG 5 cut(s) 334, 354, 362, 556, 768
BseGI GGATG 3 cut(s) 203, 461, 1213
BseJI GATNNNNATC 1 cut(s) 1117
BseLI CCNNNNNNNGG 2 cut(s) 178, 1167
BseMII CTCAG 2 cut(s) 262, 1071
BseRI GAGGAG 3 cut(s) 726, 830, 1097
BseSI GKGCMC 2 cut(s) 577, 777
BseXI GCAGC 7 cut(s) 180, 215, 446, 630, 647, 871, 1230
BseYI CCCAGC 1 cut(s) 569
BshFI GGCC 7 cut(s) 262, 444, 575, 690, 767, 927, 1214
BshNI GGYRCC 3 cut(s) 622, 774, 866
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 4 cut(s) 363, 611, 654, 1215
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 2 cut(s) 178, 1167
BsmAI GTCTC 2 cut(s) 204, 1018
BsmFI GGGAC 1 cut(s) 753
BsnI GGCC 7 cut(s) 262, 444, 575, 690, 767, 927, 1214
BsoBI CYCGRG 1 cut(s) 362
Bsp120I GGGCCC 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 577, 777
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 5 cut(s) 310, 321, 398, 586, 975
Bsp19I CCATGG 2 cut(s) 354, 768
BspACI CCGC 4 cut(s) 179, 561, 641, 674
BspANI GGCC 7 cut(s) 262, 444, 575, 690, 767, 927, 1214
BspCNI CTCAG 2 cut(s) 261, 1072
BspLI GGNNCC 6 cut(s) 360, 574, 575, 624, 776, 868
BspMAI CTGCAG 1 cut(s) 464
BspPI GGATC 2 cut(s) 318, 406
BspT107I GGYRCC 3 cut(s) 622, 774, 866
BsrFI RCCGGY 2 cut(s) 653, 1214
BsrGI TGTACA 1 cut(s) 666
BssAI RCCGGY 2 cut(s) 653, 1214
BssECI CCNNGG 5 cut(s) 334, 354, 362, 556, 768
BssMI GATC 5 cut(s) 310, 321, 398, 586, 975
BssT1I CCWWGG 4 cut(s) 334, 354, 556, 768
Bst4CI ACNGT 3 cut(s) 664, 787, 916
BstAPI GCANNNNNTGC 2 cut(s) 468, 477
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 3 cut(s) 655, 674, 1216
BstDEI CTNAG 2 cut(s) 248, 1080
BstDSI CCRYGG 2 cut(s) 354, 768
BstENI CCTNNNNNAGG 1 cut(s) 1165
BstF5I GGATG 3 cut(s) 203, 461, 1213
BstH2I RGCGCY 1 cut(s) 641
BstHHI GCGC 2 cut(s) 640, 653
BstKTI GATC 5 cut(s) 313, 324, 401, 589, 978
BstMAI GTCTC 2 cut(s) 204, 1018
BstMBI GATC 5 cut(s) 310, 321, 398, 586, 975
BstMWI GCNNNNNNNGC 5 cut(s) 45, 468, 477, 581, 864
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 361, 362
BstSFI CTRYAG 1 cut(s) 460
BstSLI GKGCMC 2 cut(s) 577, 777
BstV1I GCAGC 7 cut(s) 180, 215, 446, 630, 647, 871, 1230
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 7 cut(s) 262, 444, 575, 690, 767, 927, 1214
BtgI CCRYGG 2 cut(s) 354, 768
BtsCI GGATG 3 cut(s) 203, 461, 1213
BtsIMutI CAGTG 1 cut(s) 858
Cac8I GCNNGC 3 cut(s) 655, 674, 1216
CaiI CAGNNNCTG 2 cut(s) 468, 920
CfoI GCGC 2 cut(s) 640, 653
Cfr10I RCCGGY 2 cut(s) 653, 1214
Cfr13I GGNCC 4 cut(s) 260, 573, 574, 925
Cfr9I CCCGGG 1 cut(s) 362
Csp6I GTAC 4 cut(s) 499, 623, 667, 1192
CviAII CATG 9 cut(s) 340, 355, 368, 619, 745, 769, 779, 1027, 1069
CviQI GTAC 4 cut(s) 499, 623, 667, 1192
DdeI CTNAG 2 cut(s) 248, 1080
DpnI GATC 5 cut(s) 312, 323, 400, 588, 977
DpnII GATC 5 cut(s) 310, 321, 398, 586, 975
DraIII CACNNNGTG 1 cut(s) 781
EaeI YGGCCR 1 cut(s) 1212
Eco130I CCWWGG 4 cut(s) 334, 354, 556, 768
Eco24I GRGCYC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 362
EcoNI CCTNNNNNAGG 1 cut(s) 1165
EcoO109I RGGNCCY 2 cut(s) 573, 574
EcoRI GAATTC 1 cut(s) 222
EcoT14I CCWWGG 4 cut(s) 334, 354, 556, 768
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 4 cut(s) 334, 354, 556, 768
FaeI CATG 9 cut(s) 343, 358, 371, 622, 748, 772, 782, 1030, 1072
FaqI GGGAC 1 cut(s) 753
FatI CATG 9 cut(s) 339, 354, 367, 618, 744, 768, 778, 1026, 1068
FauI CCCGC 1 cut(s) 681
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 9 cut(s) 169, 204, 460, 562, 636, 641, 644, 885, 1219
FokI GGATG 3 cut(s) 210, 468, 1220
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 9 cut(s) 169, 204, 460, 562, 636, 641, 644, 885, 1219
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 639, 652
GluI GCNGC 9 cut(s) 169, 204, 460, 562, 636, 641, 644, 885, 1219
GsaI CCCAGC 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 641
HaeIII GGCC 7 cut(s) 262, 444, 575, 690, 767, 927, 1214
HapII CCGG 4 cut(s) 363, 611, 654, 1215
HhaI GCGC 2 cut(s) 640, 653
Hin1II CATG 9 cut(s) 343, 358, 371, 622, 748, 772, 782, 1030, 1072
Hin6I GCGC 2 cut(s) 638, 651
HinP1I GCGC 2 cut(s) 638, 651
HindIII AAGCTT 1 cut(s) 959
HinfI GANTC 3 cut(s) 56, 212, 890
HpaII CCGG 4 cut(s) 363, 611, 654, 1215
HphI GGTGA 5 cut(s) 222, 308, 392, 613, 763
Hpy166II GTNNAC 2 cut(s) 274, 667
Hpy188I TCNGA 6 cut(s) 55, 154, 310, 403, 419, 802
Hpy188III TCNNGA 4 cut(s) 219, 250, 979, 1138
Hpy8I GTNNAC 2 cut(s) 274, 667
Hpy99I CGWCG 3 cut(s) 545, 584, 1187
HpyAV CCTTC 2 cut(s) 149, 1066
HpyCH4III ACNGT 3 cut(s) 664, 787, 916
HpyCH4IV ACGT 2 cut(s) 276, 1185
HpyCH4V TGCA 6 cut(s) 462, 471, 480, 504, 877, 1101
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 468, 477, 581, 864
HpyF3I CTNAG 2 cut(s) 248, 1080
HpySE526I ACGT 2 cut(s) 276, 1185
Hsp92II CATG 9 cut(s) 343, 358, 371, 622, 748, 772, 782, 1030, 1072
HspAI GCGC 2 cut(s) 638, 651
KpnI GGTACC 1 cut(s) 626
KroI GCCGGC 2 cut(s) 653, 1214
KroNI GCCGGC 2 cut(s) 655, 1216
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 5 cut(s) 310, 321, 398, 586, 975
LmnI GCTCC 3 cut(s) 826, 1053, 1065
Lsp1109I GCAGC 7 cut(s) 180, 215, 446, 630, 647, 871, 1230
LweI GCATC 2 cut(s) 446, 1077
MaeI CTAG 1 cut(s) 192
MaeII ACGT 2 cut(s) 276, 1185
MaeIII GTNAC 3 cut(s) 406, 658, 781
MalI GATC 5 cut(s) 312, 323, 400, 588, 977
MboI GATC 5 cut(s) 310, 321, 398, 586, 975
MboII GAAGA 5 cut(s) 278, 305, 616, 766, 1189
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 577, 777
MluCI AATT 6 cut(s) 222, 346, 593, 971, 990, 1007
MlyI GAGTC 2 cut(s) 206, 884
MmeI TCCRAC 3 cut(s) 415, 433, 1152
MreI CGCCGGCG 1 cut(s) 653
MroNI GCCGGC 2 cut(s) 653, 1214
MseI TTAA 4 cut(s) 707, 956, 993, 1115
MslI CAYNNNNRTG 2 cut(s) 749, 872
MspA1I CMGCKG 2 cut(s) 643, 676
MspI CCGG 4 cut(s) 363, 611, 654, 1215
MspR9I CCNGG 2 cut(s) 363, 364
MwoI GCNNNNNNNGC 5 cut(s) 45, 468, 477, 581, 864
NaeI GCCGGC 2 cut(s) 655, 1216
NciI CCSGG 2 cut(s) 363, 364
NcoI CCATGG 2 cut(s) 354, 768
NdeII GATC 5 cut(s) 310, 321, 398, 586, 975
NgoMIV GCCGGC 2 cut(s) 653, 1214
NlaIII CATG 9 cut(s) 343, 358, 371, 622, 748, 772, 782, 1030, 1072
NlaIV GGNNCC 6 cut(s) 360, 574, 575, 624, 776, 868
NmuCI GTSAC 3 cut(s) 406, 658, 781
NspI RCATGY 1 cut(s) 343
PdiI GCCGGC 2 cut(s) 655, 1216
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 9 cut(s) 170, 205, 461, 563, 637, 642, 645, 886, 1220
PleI GAGTC 2 cut(s) 206, 884
PpsI GAGTC 2 cut(s) 206, 884
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 6 cut(s) 360, 574, 575, 624, 776, 868
PspOMI GGGCCC 1 cut(s) 573
PspPI GGNCC 4 cut(s) 260, 573, 574, 925
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 2 cut(s) 468, 920
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 4 cut(s) 500, 624, 668, 1193
RsaNI GTAC 4 cut(s) 499, 623, 667, 1192
RseI CAYNNNNRTG 2 cut(s) 749, 872
SaqAI TTAA 4 cut(s) 707, 956, 993, 1115
SatI GCNGC 9 cut(s) 169, 204, 460, 562, 636, 641, 644, 885, 1219
Sau3AI GATC 5 cut(s) 310, 321, 398, 586, 975
Sau96I GGNCC 4 cut(s) 260, 573, 574, 925
ScaI AGTACT 1 cut(s) 500
SchI GAGTC 2 cut(s) 206, 884
ScrFI CCNGG 2 cut(s) 363, 364
SduI GDGCHC 2 cut(s) 577, 777
SfaNI GCATC 2 cut(s) 446, 1077
SfcI CTRYAG 1 cut(s) 460
SgrAI CRCCGGYG 1 cut(s) 653
SmaI CCCGGG 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 749, 872
SmlI CTYRAG 2 cut(s) 935, 1091
SmoI CTYRAG 2 cut(s) 935, 1091
Sse9I AATT 6 cut(s) 222, 346, 593, 971, 990, 1007
SsiI CCGC 4 cut(s) 179, 561, 641, 674
SspI AATATT 1 cut(s) 720
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 361, 362
StyI CCWWGG 4 cut(s) 334, 354, 556, 768
TaaI ACNGT 3 cut(s) 664, 787, 916
TaiI ACGT 2 cut(s) 279, 1188
TasI AATT 6 cut(s) 222, 346, 593, 971, 990, 1007
TatI WGTACW 2 cut(s) 498, 666
TauI GCSGC 2 cut(s) 564, 643
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 4 cut(s) 707, 956, 993, 1115
Tru9I TTAA 4 cut(s) 707, 956, 993, 1115
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 3 cut(s) 406, 658, 781
TseI GCWGC 7 cut(s) 168, 203, 459, 635, 643, 884, 1218
Tsp45I GTSAC 3 cut(s) 406, 658, 781
TspDTI ATGAA 2 cut(s) 31, 1085
TspGWI ACGGA 1 cut(s) 500
TspMI CCCGGG 1 cut(s) 362
TspRI CASTG 1 cut(s) 865
XagI CCTNNNNNAGG 1 cut(s) 1165
XapI RAATTY 2 cut(s) 222, 593
XceI RCATGY 1 cut(s) 343
XmaI CCCGGG 1 cut(s) 362
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.