Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

60451051 .. 60454165

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTAGCGTTGAGGAGGAGAGAACAACAACAGGATGGGCTGCAAGAGATTTATCTGGGATTCTCTCACCCTACACCTACACTCTTAGAGACACAGGCCCAGAAGATGTTTACATCAAAGTCCTGTGCTGTGGACTTTGCCACACTGATATTCACCAGGCTCGAAATCAACTTGGCATGTCACACTATCCAATGGTTCCTGGGCATGAAATAGTCGGTGAGGTGGTGGAAGTGGGATCAGATGTGACCAAGCTCAAAGTTGGAGACGTAGTCGGAGTTGGGCTAGTCGTAGGTTGCTGCAGAGACTGCAATCCATGCAAAACAGACAACGAGCAATACTGCAACAAAAAAATCTGGACATATAGCGATGTTTACTGCGATGGCAAGCCCACCCAGGGCGGTTTTGCTGGTGCCATGGTCGTTAATCAAAAGTTTACAGTGAAGATACCGGATGGGATGGCTCCGCAGCAGGCGGCGCCACTACTTTGCGCTGCGGTGACTGTGTATAGCCCTCTTCGGAAGTTTGGTCTGAATGCTAGTGGACTAAGAGGAGGAATACTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCAAAGGCCATGGGACACCATGTCACTGTGATAAGTTCTTCTGATAAGAAGCGACAGGAAGCTATGGTGGATATTGGGGCTCACGAGTACTTGGTTAGCTCAGATGCCACAAAAATGAAAGAAGCTGCTGACTCTCTAGATTACATTATTGATACAGTGCCTGTGTTCCATCCTCTTGAGCCTTACCTTGCTTTGCTGAAACTCGATGGGAAATTGATCTTGCTGGGTGCTATTGAGACCCCTCTACAATTCCTCTCCCCCATGATCTTGCTTGGGAGGAAAACAATCACGGGGAGCTTCATAGGGAGCATGAATGAGATGGAGGAAATGCTTATATTCTGCAAAGAGAAAGGAGTAACATCAATTATTGAAGTGGTTAAAATGGATTACATCAACAAAGCCATCGAAAGGTTGGAGAAGAACGACGTTAGGTATAGGTTCGTTGTGGATGTTGCTGGCAGCAATCTTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

357

Amino Acids

38.83

Weight (kDa)

5.88

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	8.2e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	191 - 312	8.8e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	410, 475
AciI	CCGC	4 cut(s)	399, 464, 473, 494
AclWI	GGATC	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	2 cut(s)	395, 1005
AgsI	TTSAA	1 cut(s)	968
AhdI	GACNNNNNGTC	1 cut(s)	617
AjnI	CCWGG	3 cut(s)	156, 199, 393
AluBI	AGCT	5 cut(s)	253, 659, 696, 722, 894
AluI	AGCT	5 cut(s)	253, 659, 696, 722, 894
Alw26I	GTCTC	4 cut(s)	84, 258, 297, 827
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	306, 758
AoxI	GGCC	2 cut(s)	97, 603
ApeKI	GCWGC	6 cut(s)	41, 297, 466, 491, 722, 1056
AspLEI	GCGC	2 cut(s)	478, 491
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	5 cut(s)	60, 146, 230, 508, 601
AsuNHI	GCTAGC	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	410, 475
BanII	GRGCYC	1 cut(s)	679
BauI	CACGAG	1 cut(s)	680
BbvI	GCAGC	6 cut(s)	28, 284, 478, 478, 709, 1068
BccI	CCATC	8 cut(s)	30, 374, 446, 451, 774, 797, 910, 1007
BciT130I	CCWGG	3 cut(s)	158, 201, 395
BclI	TGATCA	1 cut(s)	1066
BcoDI	GTCTC	4 cut(s)	84, 258, 297, 827
BfaI	CTAG	4 cut(s)	6, 284, 537, 734
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BisI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
BlsI	GCNGC	7 cut(s)	43, 299, 468, 475, 493, 724, 1058
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	3 cut(s)	158, 201, 395
BmeRI	GACNNNNNGTC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	4 cut(s)	198, 412, 462, 477
BmrFI	CCNGG	3 cut(s)	158, 201, 395
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	691
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	794
BsaHI	GRCGYC	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	5 cut(s)	200, 393, 394, 414, 606
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 1005
Bse1I	ACTGG	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	158, 201, 395
BseDI	CCNNGG	5 cut(s)	200, 393, 394, 414, 606
BseGI	GGATG	5 cut(s)	41, 457, 462, 766, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	395, 1005
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	3 cut(s)	29, 32, 564
BseXI	GCAGC	6 cut(s)	28, 284, 478, 478, 709, 1068
BseYI	CCCAGC	1 cut(s)	820
BshFI	GGCC	2 cut(s)	99, 605
BshNI	GGYRCC	2 cut(s)	410, 475
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	3 cut(s)	576, 591, 624
BslI	CCNNNNNNNGG	2 cut(s)	395, 1005
BsmAI	GTCTC	4 cut(s)	84, 258, 297, 827
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	3 cut(s)	576, 591, 624
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	99, 605
Bso31I	GGTCTC	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	4 cut(s)	236, 813, 861, 1066
Bsp19I	CCATGG	2 cut(s)	414, 606
BspACI	CCGC	4 cut(s)	399, 464, 473, 494
BspANI	GGCC	2 cut(s)	99, 605
BspCNI	CTCAG	1 cut(s)	710
BspLI	GGNNCC	4 cut(s)	198, 412, 462, 477
BspMAI	CTGCAG	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	410, 475
BspTNI	GGTCTC	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	5 cut(s)	200, 393, 394, 414, 606
BssMI	GATC	4 cut(s)	236, 813, 861, 1066
BssNI	GRCGYC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	2 cut(s)	414, 606
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	3 cut(s)	158, 201, 395
Bst4CI	ACNGT	4 cut(s)	439, 502, 625, 754
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	476
BstAPI	GCANNNNNTGC	2 cut(s)	306, 315
BstC8I	GCNNGC	4 cut(s)	7, 386, 471, 1054
BstDEI	CTNAG	3 cut(s)	86, 545, 697
BstDSI	CCRYGG	2 cut(s)	414, 606
BstF5I	GGATG	5 cut(s)	41, 457, 462, 766, 1051
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 491
BstKTI	GATC	4 cut(s)	239, 816, 864, 1069
BstMAI	GTCTC	4 cut(s)	84, 258, 297, 827
BstMBI	GATC	4 cut(s)	236, 813, 861, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
BstNI	CCWGG	3 cut(s)	158, 201, 395
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	156, 199, 393
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	6 cut(s)	28, 284, 478, 478, 709, 1068
BsuRI	GGCC	2 cut(s)	99, 605
BtgI	CCRYGG	2 cut(s)	414, 606
BtgZI	GCGATG	2 cut(s)	381, 393
BtsCI	GGATG	5 cut(s)	41, 457, 462, 766, 1051
BtsIMutI	CAGTG	4 cut(s)	144, 444, 621, 759
Cac8I	GCNNGC	4 cut(s)	7, 386, 471, 1054
CaiI	CAGNNNCTG	2 cut(s)	306, 758
CfoI	GCGC	2 cut(s)	478, 491
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	9 cut(s)	178, 206, 315, 415, 583, 607, 617, 859, 907
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	3 cut(s)	86, 545, 697
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	4 cut(s)	238, 815, 863, 1068
DpnII	GATC	4 cut(s)	236, 813, 861, 1066
DriI	GACNNNNNGTC	1 cut(s)	617
Eam1104I	CTCTTC	1 cut(s)	519
Eam1105I	GACNNNNNGTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	414, 606
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	827
EcoRII	CCWGG	3 cut(s)	156, 199, 393
EcoT14I	CCWWGG	2 cut(s)	414, 606
EcoT38I	GRGCYC	1 cut(s)	679
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	2 cut(s)	414, 606
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	9 cut(s)	181, 209, 318, 418, 586, 610, 620, 862, 910
FaqI	GGGAC	3 cut(s)	576, 591, 624
FatI	CATG	9 cut(s)	177, 205, 314, 414, 582, 606, 616, 858, 906
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
FokI	GGATG	5 cut(s)	48, 464, 469, 753, 1058
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
FspBI	CTAG	4 cut(s)	6, 284, 537, 734
GlaI	GCGC	2 cut(s)	477, 490
GluI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
GsaI	CCCAGC	1 cut(s)	824
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	99, 605
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	478, 491
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	9 cut(s)	181, 209, 318, 418, 586, 610, 620, 862, 910
Hin6I	GCGC	2 cut(s)	476, 489
HinP1I	GCGC	2 cut(s)	476, 489
HinfI	GANTC	2 cut(s)	61, 728
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	5 cut(s)	60, 146, 230, 508, 601
Hpy166II	GTNNAC	5 cut(s)	112, 134, 373, 435, 542
Hpy188I	TCNGA	6 cut(s)	241, 275, 519, 531, 640, 700
Hpy188III	TCNNGA	5 cut(s)	355, 680, 734, 773, 1064
Hpy8I	GTNNAC	5 cut(s)	112, 134, 373, 435, 542
Hpy99I	CGWCG	1 cut(s)	1025
HpyCH4III	ACNGT	4 cut(s)	439, 502, 625, 754
HpyCH4IV	ACGT	2 cut(s)	267, 1023
HpyCH4V	TGCA	6 cut(s)	44, 300, 309, 318, 342, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
HpyF3I	CTNAG	3 cut(s)	86, 545, 697
HpySE526I	ACGT	2 cut(s)	267, 1023
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	9 cut(s)	181, 209, 318, 418, 586, 610, 620, 862, 910
HspAI	GCGC	2 cut(s)	476, 489
KasI	GGCGCC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	4 cut(s)	236, 813, 861, 1066
LmnI	GCTCC	3 cut(s)	466, 891, 903
Lsp1109I	GCAGC	6 cut(s)	28, 284, 478, 478, 709, 1068
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	4 cut(s)	6, 284, 537, 734
MaeII	ACGT	2 cut(s)	267, 1023
MaeIII	GTNAC	5 cut(s)	180, 244, 496, 619, 952
MalI	GATC	4 cut(s)	238, 815, 863, 1068
MboI	GATC	4 cut(s)	236, 813, 861, 1066
MboII	GAAGA	6 cut(s)	116, 454, 506, 604, 627, 1027
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	3 cut(s)	809, 845, 960
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	3 cut(s)	241, 253, 990
MseI	TTAA	2 cut(s)	423, 975
MslI	CAYNNNNRTG	2 cut(s)	587, 710
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	3 cut(s)	158, 201, 395
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	158, 201, 395
MwoI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
NarI	GGCGCC	1 cut(s)	476
NcoI	CCATGG	2 cut(s)	414, 606
NdeII	GATC	4 cut(s)	236, 813, 861, 1066
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	9 cut(s)	181, 209, 318, 418, 586, 610, 620, 862, 910
NlaIV	GGNNCC	4 cut(s)	198, 412, 462, 477
NmuCI	GTSAC	4 cut(s)	180, 244, 496, 619
NspI	RCATGY	1 cut(s)	181
PasI	CCCWGGG	1 cut(s)	394
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	7 cut(s)	43, 299, 468, 475, 493, 724, 1058
PleI	GAGTC	1 cut(s)	722
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	156, 199, 393
PspFI	CCCAGC	1 cut(s)	820
PspGI	CCWGG	3 cut(s)	156, 199, 393
PspN4I	GGNNCC	4 cut(s)	198, 412, 462, 477
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	306, 758
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	2 cut(s)	587, 710
SaqAI	TTAA	2 cut(s)	423, 975
SatI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
Sau3AI	GATC	4 cut(s)	236, 813, 861, 1066
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	3 cut(s)	158, 201, 395
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	2 cut(s)	587, 710
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	3 cut(s)	809, 845, 960
SsiI	CCGC	4 cut(s)	399, 464, 473, 494
SspDI	GGCGCC	1 cut(s)	475
SspMI	CTAG	4 cut(s)	6, 284, 537, 734
StyD4I	CCNGG	3 cut(s)	156, 199, 393
StyI	CCWWGG	2 cut(s)	414, 606
TaaI	ACNGT	4 cut(s)	439, 502, 625, 754
TaiI	ACGT	2 cut(s)	270, 1026
TaqI	TCGA	3 cut(s)	163, 801, 1002
TasI	AATT	3 cut(s)	809, 845, 960
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	423, 975
Tru9I	TTAA	2 cut(s)	423, 975
TscAI	CASTG	4 cut(s)	151, 444, 628, 759
TseFI	GTSAC	4 cut(s)	180, 244, 496, 619
TseI	GCWGC	6 cut(s)	41, 297, 466, 491, 722, 1056
Tsp45I	GTSAC	4 cut(s)	180, 244, 496, 619
TspDTI	ATGAA	4 cut(s)	222, 728, 886, 923
TspRI	CASTG	4 cut(s)	151, 444, 628, 759
Tth111I	GACNNNGTC	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XspI	CTAG	4 cut(s)	6, 284, 537, 734
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.