Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

19016261 .. 19016587

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1089800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGGAGGGAGGAAGACAAGCACAGGGAGCTTTGAGGGGAGCATGAAGGAGACAGAGGAGGTGCTTGAATTCTGCAAAGAGAAAGGATTGACAACGACGATCGAAGTGGATAAGATGGATTACATCAACACAGCCTTCGAAAGGGTGGAGAAAACCAACGTTAGGTACAGGTTCATCGTCGATGCAGCCAGTAGCAATCTTGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

70

Amino Acids

7.83

Weight (kDa)

4.88

Isoelectric Point (pI)

16.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	141, 162
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	68
AsuII	TTCGAA	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 162
Bse1I	ACTGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	141, 162
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	141, 162
BsmAI	GTCTC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	99, 202
BspT104I	TTCGAA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	99, 202
BstBI	TTCGAA	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	102, 205
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	99, 202
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	30, 134, 188
CviKI_1	RGCY	3 cut(s)	30, 134, 188
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	2 cut(s)	101, 204
DpnII	GATC	2 cut(s)	99, 202
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	200
Hpy99I	CGWCG	2 cut(s)	100, 182
HpyAV	CCTTC	2 cut(s)	40, 145
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	75, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	99, 202
LmnI	GCTCC	2 cut(s)	27, 39
LpnPI	CCDG	3 cut(s)	9, 154, 202
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	159
MalI	GATC	2 cut(s)	101, 204
MboI	GATC	2 cut(s)	99, 202
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	4 cut(s)	3, 28, 49, 52
MwoI	GCNNNNNNNGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	99, 202
NlaIII	CATG	1 cut(s)	46
NspV	TTCGAA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	187
Ple19I	CGATCG	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	159
PvuI	CGATCG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	99, 202
SetI	ASST	5 cut(s)	32, 63, 162, 167, 173
SfaNI	GCATC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	138
SgeI	CNNG	6 cut(s)	30, 36, 55, 77, 181, 201
Sse9I	AATT	1 cut(s)	68
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	102, 138, 180
TasI	AATT	1 cut(s)	68
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	59, 163
XagI	CCTNNNNNAGG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.