Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

6491847 .. 6495503

Gene Structure 3657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG063200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCTAGTGTTGAGGAGGAGAGAACAACAACAGGATGGGCTGCAAGAGATTCATCTGGGATTCTCTCACCCTACACCTACACTCTTAGAGACACAGGCCCAGAAGATGTTTACATCAAAGTCCTGTGCTGTGGAATTTGCCACACTGATATTCACCAGGCTAGAAATCAACTTGGCATGTCACACTATCCAATGGTTCCTGGGCATGAAATAGTCGGTGAGGTGGTGGAAGTGGGATCAGATGTGACCAAGCTCAAAGTTGGAGACGTAGTCGGAGTTGGGCTAGTCGTAGGTTGCTGCAGAGACTGCAATCCATGCAAAACAGACAACGAGCAATACTGCAACAAAAGAATCTGGACATATAGCGATGTTTACTGCGATGGCAAGCCCACCCAAGGCGGTTTTGCTGGTGCCATGGTCGTTAATCAAAAGTTTGCAGTGAAGATACCGGATGGCATGGCTCCGCAGCAGGCAGCGCCACTACTTTGCGCCGCGGTGACTGTGTATAGCCCTCTTCGGAAGTTTGGTCTGAATGCTAGTGGACTAAGAGGAGGAATACTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCAAAGGCCATGGGACACCATGTCACTGTAATAAGCTCTTCTGATAAGAAGCGACAGGAAGCTATGGTGGATATTGGGGCTCACGAGTACTTGGTTAGCTCTGATGCCACAAAAATGCAAGAAGCTGCTGACTCTCTAGATTACATTATTGATACAGTGCCTGTGTTCCATCCTCTTGAGCCTTACCTTCCCTTGCTGAAACTCGATGGGAAATTGATCTTGCTTGGTGCTATTGAGACCCCTCTACAATTCCTCTCCTCCATGATCTTGCTTGGGAGGAAAACAATCACGGGGAGCTTCATAGGGAGCATGAAGGAAATGGAGGAAATGCTTATTTTCTGCAAAGACAAAGGAGTAACATCAATTATTGAAGTGGTTAAAATGGATTACATCAACAAAGCCATCGAAAGGTTGGAGAAGAACGACGTTAGGTATAGGTTCGTTGTGGATGTTGCTGGCAGCAATCTTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

357

Amino Acids

38.81

Weight (kDa)

5.87

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	4.1e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	191 - 312	8.1e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccII	CGCG	1 cut(s)	494
AciI	CCGC	4 cut(s)	399, 464, 492, 494
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	2 cut(s)	395, 1005
AgsI	TTSAA	1 cut(s)	968
AhdI	GACNNNNNGTC	1 cut(s)	617
AjnI	CCWGG	2 cut(s)	156, 199
AluBI	AGCT	6 cut(s)	253, 633, 659, 696, 722, 894
AluI	AGCT	6 cut(s)	253, 633, 659, 696, 722, 894
Alw26I	GTCTC	4 cut(s)	84, 258, 297, 827
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	306, 758
AoxI	GGCC	2 cut(s)	97, 603
ApeKI	GCWGC	6 cut(s)	41, 297, 466, 473, 722, 1056
ApoI	RAATTY	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	478, 491
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	5 cut(s)	60, 146, 230, 508, 601
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	679
BauI	CACGAG	1 cut(s)	680
BbvI	GCAGC	6 cut(s)	28, 284, 478, 485, 709, 1068
BccI	CCATC	6 cut(s)	30, 374, 446, 774, 797, 1007
BciT130I	CCWGG	2 cut(s)	158, 201
BclI	TGATCA	1 cut(s)	1066
BcoDI	GTCTC	4 cut(s)	84, 258, 297, 827
BfaI	CTAG	5 cut(s)	6, 162, 284, 537, 734
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BisI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
BlsI	GCNGC	7 cut(s)	43, 299, 468, 475, 493, 724, 1058
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	158, 201
BmeRI	GACNNNNNGTC	1 cut(s)	617
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	198, 412, 462
BmrFI	CCNGG	2 cut(s)	158, 201
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	691
BmuI	ACTGGG	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	794
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	5 cut(s)	200, 394, 414, 492, 606
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 1005
Bse1I	ACTGG	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	158, 201
BseDI	CCNNGG	5 cut(s)	200, 394, 414, 492, 606
BseGI	GGATG	4 cut(s)	41, 457, 766, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	395, 1005
BseNI	ACTGG	1 cut(s)	564
BseRI	GAGGAG	4 cut(s)	29, 32, 564, 844
BseXI	GCAGC	6 cut(s)	28, 284, 478, 485, 709, 1068
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	99, 605
BshNI	GGYRCC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	3 cut(s)	576, 591, 624
BslI	CCNNNNNNNGG	2 cut(s)	395, 1005
BsmAI	GTCTC	4 cut(s)	84, 258, 297, 827
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	3 cut(s)	576, 591, 624
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	99, 605
Bso31I	GGTCTC	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	4 cut(s)	236, 813, 861, 1066
Bsp19I	CCATGG	2 cut(s)	414, 606
BspACI	CCGC	4 cut(s)	399, 464, 492, 494
BspANI	GGCC	2 cut(s)	99, 605
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	3 cut(s)	198, 412, 462
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	827
BsrI	ACTGG	1 cut(s)	564
BssECI	CCNNGG	5 cut(s)	200, 394, 414, 492, 606
BssMI	GATC	4 cut(s)	236, 813, 861, 1066
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	3 cut(s)	394, 414, 606
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	158, 201
Bst4CI	ACNGT	3 cut(s)	502, 625, 754
Bst6I	CTCTTC	2 cut(s)	519, 640
BstAPI	GCANNNNNTGC	2 cut(s)	306, 315
BstC8I	GCNNGC	3 cut(s)	386, 471, 1054
BstDEI	CTNAG	2 cut(s)	86, 545
BstDSI	CCRYGG	3 cut(s)	414, 492, 606
BstF5I	GGATG	4 cut(s)	41, 457, 766, 1051
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 491
BstKTI	GATC	4 cut(s)	239, 816, 864, 1069
BstMAI	GTCTC	4 cut(s)	84, 258, 297, 827
BstMBI	GATC	4 cut(s)	236, 813, 861, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
BstNI	CCWGG	2 cut(s)	158, 201
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	156, 199
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	6 cut(s)	28, 284, 478, 485, 709, 1068
BsuRI	GGCC	2 cut(s)	99, 605
BtgI	CCRYGG	3 cut(s)	414, 492, 606
BtgZI	GCGATG	2 cut(s)	381, 393
BtsCI	GGATG	4 cut(s)	41, 457, 766, 1051
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	4 cut(s)	144, 444, 621, 759
Cac8I	GCNNGC	3 cut(s)	386, 471, 1054
CaiI	CAGNNNCTG	2 cut(s)	306, 758
CfoI	GCGC	2 cut(s)	478, 491
Cfr13I	GGNCC	1 cut(s)	98
Cfr42I	CCGCGG	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	685
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	2 cut(s)	86, 545
DpnI	GATC	4 cut(s)	238, 815, 863, 1068
DpnII	GATC	4 cut(s)	236, 813, 861, 1066
DriI	GACNNNNNGTC	1 cut(s)	617
Eam1104I	CTCTTC	2 cut(s)	519, 640
Eam1105I	GACNNNNNGTC	1 cut(s)	617
EarI	CTCTTC	2 cut(s)	519, 640
Eco130I	CCWWGG	3 cut(s)	394, 414, 606
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	156, 199
EcoT14I	CCWWGG	3 cut(s)	394, 414, 606
EcoT38I	GRGCYC	1 cut(s)	679
ErhI	CCWWGG	3 cut(s)	394, 414, 606
Esp3I	CGTCTC	1 cut(s)	258
FaqI	GGGAC	3 cut(s)	576, 591, 624
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
FokI	GGATG	4 cut(s)	48, 464, 753, 1058
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
FspBI	CTAG	5 cut(s)	6, 162, 284, 537, 734
GlaI	GCGC	2 cut(s)	477, 490
GluI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	99, 605
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	478, 491
Hin6I	GCGC	2 cut(s)	476, 489
HinP1I	GCGC	2 cut(s)	476, 489
HinfI	GANTC	4 cut(s)	50, 61, 351, 728
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	5 cut(s)	60, 146, 230, 508, 601
Hpy166II	GTNNAC	3 cut(s)	112, 373, 542
Hpy188I	TCNGA	6 cut(s)	241, 275, 519, 531, 640, 700
Hpy188III	TCNNGA	5 cut(s)	355, 680, 734, 773, 1064
Hpy8I	GTNNAC	3 cut(s)	112, 373, 542
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	2 cut(s)	794, 904
HpyCH4III	ACNGT	3 cut(s)	502, 625, 754
HpyCH4IV	ACGT	2 cut(s)	267, 1023
HpyCH4V	TGCA	8 cut(s)	44, 300, 309, 318, 342, 437, 715, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
HpyF3I	CTNAG	2 cut(s)	86, 545
HpySE526I	ACGT	2 cut(s)	267, 1023
HspAI	GCGC	2 cut(s)	476, 489
Ksp22I	TGATCA	1 cut(s)	1066
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	236, 813, 861, 1066
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	3 cut(s)	466, 891, 903
Lsp1109I	GCAGC	6 cut(s)	28, 284, 478, 485, 709, 1068
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	5 cut(s)	6, 162, 284, 537, 734
MaeII	ACGT	2 cut(s)	267, 1023
MaeIII	GTNAC	5 cut(s)	180, 244, 496, 619, 952
MalI	GATC	4 cut(s)	238, 815, 863, 1068
MboI	GATC	4 cut(s)	236, 813, 861, 1066
MboII	GAAGA	6 cut(s)	116, 454, 506, 604, 627, 1027
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	4 cut(s)	135, 809, 845, 960
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	3 cut(s)	241, 253, 990
MseI	TTAA	2 cut(s)	423, 975
MslI	CAYNNNNRTG	2 cut(s)	587, 710
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	158, 201
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	158, 201
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
NcoI	CCATGG	2 cut(s)	414, 606
NdeII	GATC	4 cut(s)	236, 813, 861, 1066
NlaIV	GGNNCC	3 cut(s)	198, 412, 462
NmuCI	GTSAC	4 cut(s)	180, 244, 496, 619
NspI	RCATGY	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	640
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	50, 61, 351
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	7 cut(s)	43, 299, 468, 475, 493, 724, 1058
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
Psp6I	CCWGG	2 cut(s)	156, 199
PspGI	CCWGG	2 cut(s)	156, 199
PspN4I	GGNNCC	3 cut(s)	198, 412, 462
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	306, 758
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	2 cut(s)	587, 710
SacII	CCGCGG	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	423, 975
SatI	GCNGC	7 cut(s)	42, 298, 467, 474, 492, 723, 1057
Sau3AI	GATC	4 cut(s)	236, 813, 861, 1066
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	2 cut(s)	158, 201
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	298
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	587, 710
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	4 cut(s)	135, 809, 845, 960
SsiI	CCGC	4 cut(s)	399, 464, 492, 494
SspMI	CTAG	5 cut(s)	6, 162, 284, 537, 734
StyD4I	CCNGG	2 cut(s)	156, 199
StyI	CCWWGG	3 cut(s)	394, 414, 606
TaaI	ACNGT	3 cut(s)	502, 625, 754
TaiI	ACGT	2 cut(s)	270, 1026
TaqI	TCGA	2 cut(s)	801, 1002
TasI	AATT	4 cut(s)	135, 809, 845, 960
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	3 cut(s)	50, 61, 351
Tru1I	TTAA	2 cut(s)	423, 975
Tru9I	TTAA	2 cut(s)	423, 975
TscAI	CASTG	4 cut(s)	151, 444, 628, 759
TseFI	GTSAC	4 cut(s)	180, 244, 496, 619
TseI	GCWGC	6 cut(s)	41, 297, 466, 473, 722, 1056
Tsp45I	GTSAC	4 cut(s)	180, 244, 496, 619
TspDTI	ATGAA	4 cut(s)	42, 222, 886, 923
TspRI	CASTG	4 cut(s)	151, 444, 628, 759
Tth111I	GACNNNGTC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XspI	CTAG	5 cut(s)	6, 162, 284, 537, 734
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.