Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379393.1

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

426 .. 1109

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggggtctgacagggttgtaaggggaggcatattgggtttaggaggagttggacacttgggtgtcataattgcaaaggcaatgggtcaccatgtgaccgtgataagctcttctaataagaagagggaagaggctttggagattttaggtgccgatgcttttatagttggctccaatgaggctgagatggagggagctgccagcagccttgactatatcctcgacactgtaccagctttgcaccctctgcactcttacctttcactcctcaaggttgacggtaagctcataatagttgctgctgttcctcaaccgcttcagtttgatgcagttgacataattctagggaagaggagcatttccgggagcttcatcggaagcatggaagaaacgcaggaaatactggagttctgggccgataaggatttgacgactatgatagagatagtaaaactggattatgctaacatggcatttgagagaatggaaaaaaatgatgtgaggtttaggtttgtcctggatgtagccggaagcaacctggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

181

Amino Acids

19.6

Weight (kDa)

4.92

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	302
AdeI	CACNNNGTG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	231
AjnI	CCWGG	2 cut(s)	516, 537
AleI	CACNNNNGTG	1 cut(s)	60
AluBI	AGCT	5 cut(s)	108, 197, 236, 286, 369
AluI	AGCT	5 cut(s)	108, 197, 236, 286, 369
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	3 cut(s)	197, 204, 299
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	184, 216, 286
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	518, 539
BcnI	CCSGG	1 cut(s)	364
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	3 cut(s)	198, 205, 300
BlsI	GCNGC	3 cut(s)	199, 206, 301
Bme1390I	CCNGG	3 cut(s)	364, 518, 539
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	2 cut(s)	151, 172
BmrFI	CCNGG	3 cut(s)	364, 518, 539
BmsI	GCATC	2 cut(s)	145, 316
BpmI	CTGGAG	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	408, 459
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	518, 539
BseGI	GGATG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	2 cut(s)	408, 459
BseRI	GAGGAG	3 cut(s)	60, 257, 367
BseXI	GCAGC	3 cut(s)	184, 216, 286
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	363, 528
BsnI	GGCC	1 cut(s)	416
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	151, 172
BspQI	GCTCTTC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	408, 459
Bst2UI	CCWGG	2 cut(s)	518, 539
Bst4CI	ACNGT	3 cut(s)	100, 229, 281
Bst6I	CTCTTC	4 cut(s)	115, 116, 123, 344
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	526
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 470
BstNI	CCWGG	2 cut(s)	518, 539
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	362, 516, 537
BstV1I	GCAGC	3 cut(s)	184, 216, 286
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	3 cut(s)	92, 382, 469
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	183
DraIII	CACNNNGTG	1 cut(s)	94
Eam1104I	CTCTTC	4 cut(s)	115, 116, 123, 344
EarI	CTCTTC	4 cut(s)	115, 116, 123, 344
Eco57I	CTGAAG	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	516, 537
FaeI	CATG	3 cut(s)	95, 385, 472
FatI	CATG	3 cut(s)	91, 381, 468
Fnu4HI	GCNGC	3 cut(s)	198, 205, 300
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	3 cut(s)	198, 205, 300
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	3 cut(s)	198, 205, 300
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	363, 528
Hin1II	CATG	3 cut(s)	95, 385, 472
HincII	GTYRAC	2 cut(s)	277, 334
HindII	GTYRAC	2 cut(s)	277, 334
HpaII	CCGG	2 cut(s)	363, 528
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	277, 334
Hpy188I	TCNGA	2 cut(s)	10, 377
Hpy8I	GTNNAC	2 cut(s)	277, 334
HpyCH4III	ACNGT	3 cut(s)	100, 229, 281
HpyCH4V	TGCA	4 cut(s)	74, 241, 250, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 470
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	95, 385, 472
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	4 cut(s)	176, 194, 354, 366
Lsp1109I	GCAGC	3 cut(s)	184, 216, 286
LweI	GCATC	2 cut(s)	145, 316
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	86, 94
MboII	GAAGA	5 cut(s)	102, 133, 140, 361, 398
MluCI	AATT	2 cut(s)	69, 339
MmeI	TCCRAC	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	2 cut(s)	363, 528
MspR9I	CCNGG	3 cut(s)	364, 518, 539
MvaI	CCWGG	2 cut(s)	518, 539
MwoI	GCNNNNNNNGC	2 cut(s)	247, 470
NciI	CCSGG	1 cut(s)	364
NlaIII	CATG	3 cut(s)	95, 385, 472
NlaIV	GGNNCC	2 cut(s)	151, 172
NmuCI	GTSAC	2 cut(s)	86, 94
OliI	CACNNNNGTG	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	115
PfoI	TCCNGGA	2 cut(s)	362, 516
PkrI	GCNGC	3 cut(s)	199, 206, 301
Psp6I	CCWGG	2 cut(s)	516, 537
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	516, 537
PspN4I	GGNNCC	2 cut(s)	151, 172
PspPI	GGNCC	1 cut(s)	414
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	115
SatI	GCNGC	3 cut(s)	198, 205, 300
Sau96I	GGNCC	1 cut(s)	414
ScrFI	CCNGG	3 cut(s)	364, 518, 539
SfaNI	GCATC	2 cut(s)	145, 316
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	69, 339
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	3 cut(s)	362, 516, 537
TaaI	ACNGT	3 cut(s)	100, 229, 281
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	69, 339
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	86, 94
TseI	GCWGC	3 cut(s)	197, 204, 299
Tsp45I	GTSAC	2 cut(s)	86, 94
TspDTI	ATGAA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	232
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.