RchiOBHm_Chr6g0255061

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
10302098 .. 10304847
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22879

Sequence Viewer

Length: 1074 bp
ATGGGTAGTCTTGAAGCGGAGAGAACAACTGTGGGATGGGCTGCAAGAGACTCTTCTGGGATTCTCTCACCTTACACCTATAATCTTAGGAGCACAGGGCCAGAAGATGTTTATATCAAAGTCCTGAACTGTGGAATTTGCCATTCTGATCTTCACCAGATCAAAAACGAACTTGGCCAGTCAAATTATCCCATGGTTGCAGGGCATGAAGTTGTTGGTGAAGTTTTGGAGGTGGGATCAGATGTGACCAAGTTCAAAGTAGGAGATGTTGTCGGAGTTGGACTCCTTGTAGGTTGCTGCAGAAACTGCAACCCATGCAAGACAGAGAATGAGCAATACTGCAACAAGAAGATCTGGTCTTACAATGACACTTACTCCGATGGCAAGCCCACCCAAGGTGGCTTTGCCAAATCCTTGGTGGCCGACCAAAAGTTTGTTGTGAATATACCGGAGGGCATGGAGCCGGAGCAGGTGGCGCCGCTGCTTTGTGCGGGAGTGACAATTTACAGCCCACTGAGGCACTTTGGTCTGGATGTGAGTGGATTAAGGGGAGGAATATTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCAAAGGCCATGGGACACCATATCACTGTGATAAGCTCTTCCGATAAGAAGAGACAAGAGGCTTTAGAGGATATTGGTGCTGATGAGTACTTGGTGAGCTCTGATGTCACCAAAATGCAAGAGGCTATGGACTCAATGGATTACATTATTGACACTATTCCTGTGTTCCACCCTCTTGAGCCTTACCTCTCTTTGTTGAAACTTGATGGGAAATTGATCTTGATGGGTGTTATCAACACCCCTTTGCAATTTGTCTCTCCATTGGTCATGCTTGGGAGGAAGACAATCACCGGGAGCTTTGTGGGGAGCATGAAGGAGATGGAGGAAATGCTCGAGTTCTGCAAAGAGAAAGGACTAAAATCGATGATCGAAGTGGTTAAGATGGACTACATCAACGAAGCCTTCGAAAGGTTGGAGAAGAACGACGTTAGGTACAGGTTCGTTGTGGACGTTGCGGGCAGCAATCTGGATCAATGA

Protein Analysis

357

Amino Acids

39.16

Weight (kDa)

5.21

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 151 1.7e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 191 - 314 4.7e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 475
AciI CCGC 4 cut(s) 17, 479, 491, 1052
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 2 cut(s) 175, 420
AcsI RAATTY 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 2 cut(s) 686, 1031
AfiI CCNNNNNNNGG 2 cut(s) 395, 1005
AgsI TTSAA 3 cut(s) 14, 256, 796
AluBI AGCT 3 cut(s) 633, 696, 894
AluI AGCT 3 cut(s) 633, 696, 894
Alw21I GWGCWC 2 cut(s) 95, 698
Alw26I GTCTC 3 cut(s) 42, 643, 856
AlwI GGATC 1 cut(s) 244
AlwNI CAGNNNCTG 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 4 cut(s) 98, 175, 420, 603
ApeKI GCWGC 4 cut(s) 41, 297, 481, 1056
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 889
AsuHPI GGTGA 7 cut(s) 60, 146, 230, 601, 697, 703, 877
AsuII TTCGAA 1 cut(s) 1002
AvaI CYCGRG 1 cut(s) 929
BalI TGGCCA 1 cut(s) 177
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 2 cut(s) 95, 698
BbvI GCAGC 4 cut(s) 28, 284, 468, 1068
BccI CCATC 6 cut(s) 30, 374, 797, 814, 910, 973
BcnI CCSGG 1 cut(s) 889
BcoDI GTCTC 3 cut(s) 42, 643, 856
BfmI CTRYAG 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 460
BglII AGATCT 1 cut(s) 351
BisI GCNGC 5 cut(s) 42, 298, 479, 482, 1057
BlsI GCNGC 5 cut(s) 43, 299, 480, 483, 1058
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 889
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 462, 477
BmrFI CCNGG 1 cut(s) 889
BpiI GAAGAC 1 cut(s) 884
BplI GAGNNNNNCTC 2 cut(s) 267, 299
Bpu14I TTCGAA 1 cut(s) 1002
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 889
Bsa29I ATCGAT 1 cut(s) 959
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 4 cut(s) 192, 394, 414, 606
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 1005
Bse1I ACTGG 1 cut(s) 178
BseCI ATCGAT 1 cut(s) 959
BseDI CCNNGG 4 cut(s) 192, 394, 414, 606
BseGI GGATG 2 cut(s) 41, 538
BseLI CCNNNNNNNGG 2 cut(s) 395, 1005
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 4 cut(s) 28, 284, 468, 1068
BshFI GGCC 4 cut(s) 100, 177, 422, 605
BshNI GGYRCC 1 cut(s) 475
BshVI ATCGAT 1 cut(s) 959
BsiHKAI GWGCWC 2 cut(s) 95, 698
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 3 cut(s) 449, 464, 888
BslFI GGGAC 3 cut(s) 576, 591, 624
BslI CCNNNNNNNGG 2 cut(s) 395, 1005
BsmAI GTCTC 3 cut(s) 42, 643, 856
BsmFI GGGAC 3 cut(s) 576, 591, 624
BsnI GGCC 4 cut(s) 100, 177, 422, 605
BsoBI CYCGRG 1 cut(s) 929
Bsp119I TTCGAA 1 cut(s) 1002
Bsp1286I GDGCHC 2 cut(s) 95, 698
Bsp143I GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
Bsp19I CCATGG 2 cut(s) 192, 606
BspACI CCGC 4 cut(s) 17, 479, 491, 1052
BspANI GGCC 4 cut(s) 100, 177, 422, 605
BspCNI CTCAG 1 cut(s) 507
BspDI ATCGAT 1 cut(s) 959
BspLI GGNNCC 2 cut(s) 462, 477
BspMAI CTGCAG 1 cut(s) 302
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 640
BspT104I TTCGAA 1 cut(s) 1002
BspT107I GGYRCC 1 cut(s) 475
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 4 cut(s) 192, 394, 414, 606
BssMI GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
BssNI GRCGYC 1 cut(s) 476
BssT1I CCWWGG 4 cut(s) 192, 394, 414, 606
Bst4CI ACNGT 3 cut(s) 31, 131, 625
Bst6I CTCTTC 3 cut(s) 58, 640, 641
BstACI GRCGYC 1 cut(s) 476
BstAPI GCANNNNNTGC 2 cut(s) 306, 315
BstBI TTCGAA 1 cut(s) 1002
BstC8I GCNNGC 2 cut(s) 386, 1054
BstDEI CTNAG 2 cut(s) 86, 515
BstDSI CCRYGG 2 cut(s) 192, 606
BstENI CCTNNNNNAGG 1 cut(s) 1003
BstF5I GGATG 2 cut(s) 41, 538
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 7 cut(s) 151, 162, 239, 354, 816, 966, 1069
BstMAI GTCTC 3 cut(s) 42, 643, 856
BstMBI GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
BstMWI GCNNNNNNNGC 3 cut(s) 306, 315, 475
BstSCI CCNGG 1 cut(s) 887
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 4 cut(s) 28, 284, 468, 1068
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 1 cut(s) 351
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 1 cut(s) 351
Bsu15I ATCGAT 1 cut(s) 959
BsuRI GGCC 4 cut(s) 100, 177, 422, 605
BsuTUI ATCGAT 1 cut(s) 959
BtgI CCRYGG 2 cut(s) 192, 606
BtsCI GGATG 2 cut(s) 41, 538
BtsIMutI CAGTG 2 cut(s) 512, 621
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 386, 1054
CaiI CAGNNNCTG 1 cut(s) 306
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 959
Csp6I GTAC 2 cut(s) 685, 1030
CviAII CATG 8 cut(s) 193, 206, 315, 457, 583, 607, 865, 907
CviQI GTAC 2 cut(s) 685, 1030
DdeI CTNAG 2 cut(s) 86, 515
DinI GGCGCC 1 cut(s) 477
DpnI GATC 7 cut(s) 150, 161, 238, 353, 815, 965, 1068
DpnII GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
EaeI YGGCCR 2 cut(s) 175, 420
Eam1104I CTCTTC 3 cut(s) 58, 640, 641
EarI CTCTTC 3 cut(s) 58, 640, 641
Ecl136II GAGCTC 1 cut(s) 696
Eco130I CCWWGG 4 cut(s) 192, 394, 414, 606
Eco24I GRGCYC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 929
EcoICRI GAGCTC 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 1003
EcoT14I CCWWGG 4 cut(s) 192, 394, 414, 606
EcoT38I GRGCYC 1 cut(s) 698
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
ErhI CCWWGG 4 cut(s) 192, 394, 414, 606
FaeI CATG 8 cut(s) 196, 209, 318, 460, 586, 610, 868, 910
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 3 cut(s) 576, 591, 624
FatI CATG 8 cut(s) 192, 205, 314, 456, 582, 606, 864, 906
FauI CCCGC 2 cut(s) 484, 1045
Fnu4HI GCNGC 5 cut(s) 42, 298, 479, 482, 1057
FokI GGATG 2 cut(s) 48, 545
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 5 cut(s) 42, 298, 479, 482, 1057
GlaI GCGC 1 cut(s) 477
GluI GCNGC 5 cut(s) 42, 298, 479, 482, 1057
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 4 cut(s) 100, 177, 422, 605
HapII CCGG 3 cut(s) 449, 464, 888
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 8 cut(s) 196, 209, 318, 460, 586, 610, 868, 910
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HinfI GANTC 4 cut(s) 50, 61, 282, 728
HpaII CCGG 3 cut(s) 449, 464, 888
HphI GGTGA 7 cut(s) 60, 146, 230, 601, 697, 703, 877
Hpy166II GTNNAC 1 cut(s) 1045
Hpy188I TCNGA 6 cut(s) 148, 241, 275, 379, 640, 700
Hpy188III TCNNGA 6 cut(s) 11, 124, 530, 773, 817, 1064
Hpy8I GTNNAC 1 cut(s) 1045
Hpy99I CGWCG 1 cut(s) 1025
HpyAV CCTTC 2 cut(s) 904, 1009
HpyCH4III ACNGT 3 cut(s) 31, 131, 625
HpyCH4IV ACGT 2 cut(s) 1023, 1047
HpyCH4V TGCA 9 cut(s) 44, 200, 300, 309, 318, 342, 715, 844, 939
HpyF10VI GCNNNNNNNGC 3 cut(s) 306, 315, 475
HpyF3I CTNAG 2 cut(s) 86, 515
HpySE526I ACGT 2 cut(s) 1023, 1047
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 8 cut(s) 196, 209, 318, 460, 586, 610, 868, 910
HspAI GCGC 1 cut(s) 476
KasI GGCGCC 1 cut(s) 475
Kzo9I GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
LguI GCTCTTC 1 cut(s) 640
LmnI GCTCC 5 cut(s) 90, 460, 466, 891, 903
Lsp1109I GCAGC 4 cut(s) 28, 284, 468, 1068
MaeII ACGT 2 cut(s) 1023, 1047
MaeIII GTNAC 3 cut(s) 244, 496, 703
MalI GATC 7 cut(s) 150, 161, 238, 353, 815, 965, 1068
MboI GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
MboII GAAGA 9 cut(s) 45, 116, 143, 361, 604, 627, 658, 889, 1027
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 2 cut(s) 95, 698
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 5 cut(s) 135, 184, 501, 809, 845
MluNI TGGCCA 1 cut(s) 177
Mly113I GGCGCC 1 cut(s) 476
MlyI GAGTC 3 cut(s) 44, 276, 722
MmeI TCCRAC 3 cut(s) 253, 259, 990
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
MseI TTAA 2 cut(s) 545, 975
MslI CAYNNNNRTG 2 cut(s) 587, 710
Msp20I TGGCCA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 481
MspI CCGG 3 cut(s) 449, 464, 888
MspR9I CCNGG 1 cut(s) 889
MwoI GCNNNNNNNGC 3 cut(s) 306, 315, 475
NarI GGCGCC 1 cut(s) 476
NciI CCSGG 1 cut(s) 889
NcoI CCATGG 2 cut(s) 192, 606
NdeII GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
NlaIII CATG 8 cut(s) 196, 209, 318, 460, 586, 610, 868, 910
NlaIV GGNNCC 2 cut(s) 462, 477
NmuCI GTSAC 3 cut(s) 244, 496, 703
NspV TTCGAA 1 cut(s) 1002
PaeR7I CTCGAG 1 cut(s) 929
PaqCI CACCTGC 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 640
PcsI WCGNNNNNNNCGW 2 cut(s) 999, 1044
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 5 cut(s) 43, 299, 480, 483, 1058
PleI GAGTC 3 cut(s) 44, 276, 722
PluTI GGCGCC 1 cut(s) 479
PpsI GAGTC 3 cut(s) 44, 276, 722
Psp124BI GAGCTC 1 cut(s) 698
PspN4I GGNNCC 2 cut(s) 462, 477
PspPI GGNCC 1 cut(s) 98
PspXI VCTCGAGB 1 cut(s) 929
PstI CTGCAG 1 cut(s) 302
PstNI CAGNNNCTG 1 cut(s) 306
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 2 cut(s) 686, 1031
RsaNI GTAC 2 cut(s) 685, 1030
RseI CAYNNNNRTG 2 cut(s) 587, 710
SacI GAGCTC 1 cut(s) 698
SapI GCTCTTC 1 cut(s) 640
SaqAI TTAA 2 cut(s) 545, 975
SatI GCNGC 5 cut(s) 42, 298, 479, 482, 1057
Sau3AI GATC 7 cut(s) 148, 159, 236, 351, 813, 963, 1066
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 3 cut(s) 44, 276, 722
ScrFI CCNGG 1 cut(s) 889
SduI GDGCHC 2 cut(s) 95, 698
SfcI CTRYAG 1 cut(s) 298
SfoI GGCGCC 1 cut(s) 477
Sfr274I CTCGAG 1 cut(s) 929
SfuI TTCGAA 1 cut(s) 1002
SlaI CTCGAG 1 cut(s) 929
SmiMI CAYNNNNRTG 2 cut(s) 587, 710
SmlI CTYRAG 2 cut(s) 773, 929
SmoI CTYRAG 2 cut(s) 773, 929
Sse9I AATT 5 cut(s) 135, 184, 501, 809, 845
SsiI CCGC 4 cut(s) 17, 479, 491, 1052
SspDI GGCGCC 1 cut(s) 475
SspI AATATT 1 cut(s) 558
SstI GAGCTC 1 cut(s) 698
StyD4I CCNGG 1 cut(s) 887
StyI CCWWGG 4 cut(s) 192, 394, 414, 606
TaaI ACNGT 3 cut(s) 31, 131, 625
TaiI ACGT 2 cut(s) 1026, 1050
TaqI TCGA 4 cut(s) 930, 959, 966, 1002
TasI AATT 5 cut(s) 135, 184, 501, 809, 845
TatI WGTACW 1 cut(s) 684
TauI GCSGC 1 cut(s) 481
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 545, 975
Tru9I TTAA 2 cut(s) 545, 975
TscAI CASTG 2 cut(s) 519, 628
TseFI GTSAC 3 cut(s) 244, 496, 703
TseI GCWGC 4 cut(s) 41, 297, 481, 1056
Tsp45I GTSAC 3 cut(s) 244, 496, 703
TspDTI ATGAA 2 cut(s) 222, 923
TspRI CASTG 2 cut(s) 519, 628
XagI CCTNNNNNAGG 1 cut(s) 1003
XapI RAATTY 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 929
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.