Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

15568072 .. 15570915

Gene Structure 2844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G135100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGTTAGCCTTGAGGTGGAGAGAACAACAACAGGATGGGCTGCAAGAGACTCGTCTGGGATTCTTTCACCCTACACATATACTCTTAGAAACACTGGGCCGGAAGATGTTTACATCAAAGTACTATTCTGTGGAGTTTGCCACACTGATACTCACCAGGCCAAAAATCATCTTGGCATGTCAAAGTATCCCATGGTTCCTGGGCATGAAGTGGTTGGTGAGGTGGTGGAGGTGGGATCAGCTGTGAGCAAGTTCATAGTAGGAGATGTGGTTGGAGTTGGGCTCATAGTGGGTTGCTGCAGGAACTGCAATCCTTGTAAAACAGACAACGAGCAATACTGCAACAAGAAAATCTGGACATACAGTGACGTTTACACCGATGGGAAACTCACCCAAGGCGGCTTTTCTGCTGCCCTAGTCATCGATCAAAAGTTTGCGGTGAAGATACCAGATGGCATGGTGCTGGAACAGGCGGCGCCGCTGCTGTGCGCGGGGGTGACGGTGTACAGCCCACTGAGGCAGTTTGGTCTGAATGTGAGTGGGTTAAGAGGAGGCATATTAGGACTTGGGGGTGTAGGACACATGGGGGTGAAGATAGCAAAGGCCATGGAACACCATGTGACTGTGATAAGCTCTTCTGACAAGAAAAGAGTGGAGGCCATGGAACATATTGGGGCTGATGAGTACCTGATCAGCTCCGATGCCACTAAAATGCAAGAGGCTGCTGATTCGTTGGATTACATTATTGACACAGTGCCTGTGGTCCACCCACTTGAGCCCTACCTCTCTTTGTTGAAGCTTGATGGGAAATTGATCTTGATGGGTGCTATCAACGACCCTTTACAATTTGTCTCCCCCATGCTCATGCTTGGGAGGAAGACAATCACAGGGAGCTTTGTGGGGAGCATGAAGGAGACAGAGGAGATGCTTGAATTCTGCAAAGAGAAAGGATTGAAAACAATGATTGAAGTGGTTAAGATGGAATATATCAACACAGCCTTCGAGAGGTTAGAGAAAAACGATGTTAGGTACAGGTTCGTTGTGGATGTGGCTGCCAGCAATCTTCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

358

Amino Acids

39.02

Weight (kDa)

5.83

Isoelectric Point (pI)

22.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	1 cut(s)	491
AciI	CCGC	5 cut(s)	399, 437, 473, 479, 491
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	932
AcyI	GRCGYC	1 cut(s)	476
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	4 cut(s)	123, 506, 686, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	16, 1005
AgsI	TTSAA	4 cut(s)	796, 932, 955, 968
AjnI	CCWGG	2 cut(s)	156, 199
AluBI	AGCT	5 cut(s)	242, 633, 696, 799, 894
AluI	AGCT	5 cut(s)	242, 633, 696, 799, 894
Alw26I	GTCTC	3 cut(s)	42, 856, 908
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	306, 758
AoxI	GGCC	4 cut(s)	98, 159, 603, 657
ApeKI	GCWGC	6 cut(s)	41, 297, 410, 481, 722, 1052
ApoI	RAATTY	1 cut(s)	932
AspLEI	GCGC	2 cut(s)	478, 491
AspS9I	GGNCC	2 cut(s)	98, 763
AsuHPI	GGTGA	7 cut(s)	60, 146, 230, 382, 451, 508, 601
AvaII	GGWCC	1 cut(s)	763
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	2 cut(s)	285, 780
BbsI	GAAGAC	1 cut(s)	884
BbvI	GCAGC	6 cut(s)	28, 284, 397, 468, 709, 1039
BccI	CCATC	6 cut(s)	30, 374, 446, 797, 814, 973
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	2 cut(s)	158, 201
BciVI	GTATCC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	3 cut(s)	42, 856, 908
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	9 cut(s)	42, 298, 400, 411, 474, 479, 482, 723, 1053
BlsI	GCNGC	9 cut(s)	43, 299, 401, 412, 475, 480, 483, 724, 1054
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	158, 201
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	2 cut(s)	98, 763
BmiI	GGNNCC	2 cut(s)	198, 477
BmrFI	CCNGG	2 cut(s)	158, 201
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	691, 915
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	884
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BpuEI	CTTGAG	2 cut(s)	32, 794
Bsa29I	ATCGAT	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	192, 200, 394, 606, 660
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 1005
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	158, 201
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	5 cut(s)	192, 200, 394, 606, 660
BseGI	GGATG	2 cut(s)	41, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	16, 1005
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	564, 935
BseXI	GCAGC	6 cut(s)	28, 284, 397, 468, 709, 1039
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	4 cut(s)	100, 161, 605, 659
BshNI	GGYRCC	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	16, 1005
BsmAI	GTCTC	3 cut(s)	42, 856, 908
BsnI	GGCC	4 cut(s)	100, 161, 605, 659
Bsp1286I	GDGCHC	2 cut(s)	285, 780
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	236, 424, 690, 813
Bsp19I	CCATGG	3 cut(s)	192, 606, 660
BspACI	CCGC	5 cut(s)	399, 437, 473, 479, 491
BspANI	GGCC	4 cut(s)	100, 161, 605, 659
BspCNI	CTCAG	1 cut(s)	507
BspDI	ATCGAT	1 cut(s)	423
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	198, 477
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	475
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	5 cut(s)	192, 200, 394, 606, 660
BssMI	GATC	4 cut(s)	236, 424, 690, 813
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	4 cut(s)	192, 394, 606, 660
Bst2UI	CCWGG	2 cut(s)	158, 201
Bst4CI	ACNGT	4 cut(s)	365, 502, 625, 754
Bst6I	CTCTTC	1 cut(s)	640
BstACI	GRCGYC	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	1057
BstDEI	CTNAG	2 cut(s)	86, 515
BstDSI	CCRYGG	3 cut(s)	192, 606, 660
BstENI	CCTNNNNNAGG	1 cut(s)	1003
BstF5I	GGATG	2 cut(s)	41, 1051
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 491
BstKTI	GATC	4 cut(s)	239, 427, 693, 816
BstMAI	GTCTC	3 cut(s)	42, 856, 908
BstMBI	GATC	4 cut(s)	236, 424, 690, 813
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstNI	CCWGG	2 cut(s)	158, 201
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	156, 199
BstSFI	CTRYAG	1 cut(s)	298
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	6 cut(s)	28, 284, 397, 468, 709, 1039
BstV2I	GAAGAC	1 cut(s)	884
Bsu15I	ATCGAT	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	4 cut(s)	100, 161, 605, 659
BsuTUI	ATCGAT	1 cut(s)	423
BtgI	CCRYGG	3 cut(s)	192, 606, 660
BtsCI	GGATG	2 cut(s)	41, 1051
BtsIMutI	CAGTG	5 cut(s)	93, 144, 370, 512, 759
Cac8I	GCNNGC	1 cut(s)	1057
CaiI	CAGNNNCTG	2 cut(s)	306, 758
CfoI	GCGC	2 cut(s)	478, 491
Cfr13I	GGNCC	2 cut(s)	98, 763
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	4 cut(s)	122, 505, 685, 1030
CviQI	GTAC	4 cut(s)	122, 505, 685, 1030
DdeI	CTNAG	2 cut(s)	86, 515
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	4 cut(s)	238, 426, 692, 815
DpnII	GATC	4 cut(s)	236, 424, 690, 813
DraIII	CACNNNGTG	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	640
EarI	CTCTTC	1 cut(s)	640
Eco130I	CCWWGG	4 cut(s)	192, 394, 606, 660
Eco24I	GRGCYC	2 cut(s)	285, 780
Eco47I	GGWCC	1 cut(s)	763
EcoNI	CCTNNNNNAGG	1 cut(s)	1003
EcoRI	GAATTC	1 cut(s)	932
EcoRII	CCWGG	2 cut(s)	156, 199
EcoT14I	CCWWGG	4 cut(s)	192, 394, 606, 660
EcoT38I	GRGCYC	2 cut(s)	285, 780
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	4 cut(s)	192, 394, 606, 660
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	690
Fnu4HI	GCNGC	9 cut(s)	42, 298, 400, 411, 474, 479, 482, 723, 1053
FokI	GGATG	2 cut(s)	48, 1058
FriOI	GRGCYC	2 cut(s)	285, 780
Fsp4HI	GCNGC	9 cut(s)	42, 298, 400, 411, 474, 479, 482, 723, 1053
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	477, 490
GluI	GCNGC	9 cut(s)	42, 298, 400, 411, 474, 479, 482, 723, 1053
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	100, 161, 605, 659
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	2 cut(s)	478, 491
Hin1I	GRCGYC	1 cut(s)	476
Hin6I	GCGC	2 cut(s)	476, 489
HinP1I	GCGC	2 cut(s)	476, 489
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	3 cut(s)	50, 61, 728
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	7 cut(s)	60, 146, 230, 382, 451, 508, 601
Hpy166II	GTNNAC	4 cut(s)	112, 373, 505, 766
Hpy188I	TCNGA	3 cut(s)	531, 640, 700
Hpy188III	TCNNGA	3 cut(s)	355, 817, 1003
Hpy8I	GTNNAC	4 cut(s)	112, 373, 505, 766
HpyAV	CCTTC	2 cut(s)	904, 1009
HpyCH4III	ACNGT	4 cut(s)	365, 502, 625, 754
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	6 cut(s)	44, 300, 309, 342, 715, 939
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	86, 515
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	476
HspAI	GCGC	2 cut(s)	476, 489
KasI	GGCGCC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	4 cut(s)	236, 424, 690, 813
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	3 cut(s)	701, 891, 903
Lsp1109I	GCAGC	6 cut(s)	28, 284, 397, 468, 709, 1039
LweI	GCATC	2 cut(s)	691, 915
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	365, 496, 619
MalI	GATC	4 cut(s)	238, 426, 692, 815
MboI	GATC	4 cut(s)	236, 424, 690, 813
MboII	GAAGA	6 cut(s)	116, 454, 604, 627, 889, 1055
MhlI	GDGCHC	2 cut(s)	285, 780
MluCI	AATT	3 cut(s)	809, 845, 932
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	253, 714
MseI	TTAA	2 cut(s)	545, 975
MslI	CAYNNNNRTG	3 cut(s)	587, 710, 863
MspA1I	CMGCKG	2 cut(s)	242, 481
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	158, 201
MvaI	CCWGG	2 cut(s)	158, 201
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	306
NarI	GGCGCC	1 cut(s)	476
NcoI	CCATGG	3 cut(s)	192, 606, 660
NdeII	GATC	4 cut(s)	236, 424, 690, 813
NlaIV	GGNNCC	2 cut(s)	198, 477
NmuCI	GTSAC	3 cut(s)	365, 496, 619
NspI	RCATGY	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	61, 728
PkrI	GCNGC	9 cut(s)	43, 299, 401, 412, 475, 480, 483, 724, 1054
PleI	GAGTC	1 cut(s)	44
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	156, 199
PspGI	CCWGG	2 cut(s)	156, 199
PspN4I	GGNNCC	2 cut(s)	198, 477
PspPI	GGNCC	2 cut(s)	98, 763
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	306, 758
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	4 cut(s)	123, 506, 686, 1031
RsaNI	GTAC	4 cut(s)	122, 505, 685, 1030
RseI	CAYNNNNRTG	3 cut(s)	587, 710, 863
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	545, 975
SatI	GCNGC	9 cut(s)	42, 298, 400, 411, 474, 479, 482, 723, 1053
Sau3AI	GATC	4 cut(s)	236, 424, 690, 813
Sau96I	GGNCC	2 cut(s)	98, 763
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	158, 201
SduI	GDGCHC	2 cut(s)	285, 780
SfaNI	GCATC	2 cut(s)	691, 915
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	3 cut(s)	587, 710, 863
SmlI	CTYRAG	2 cut(s)	11, 773
SmoI	CTYRAG	2 cut(s)	11, 773
Sse9I	AATT	3 cut(s)	809, 845, 932
SsiI	CCGC	5 cut(s)	399, 437, 473, 479, 491
SspDI	GGCGCC	1 cut(s)	475
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	156, 199
StyI	CCWWGG	4 cut(s)	192, 394, 606, 660
TaaI	ACNGT	4 cut(s)	365, 502, 625, 754
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	423, 1002
TasI	AATT	3 cut(s)	809, 845, 932
TatI	WGTACW	2 cut(s)	121, 504
TauI	GCSGC	3 cut(s)	402, 476, 481
TfiI	GAWTC	2 cut(s)	61, 728
Tru1I	TTAA	2 cut(s)	545, 975
Tru9I	TTAA	2 cut(s)	545, 975
TscAI	CASTG	5 cut(s)	100, 151, 370, 519, 759
TseFI	GTSAC	3 cut(s)	365, 496, 619
TseI	GCWGC	6 cut(s)	41, 297, 410, 481, 722, 1052
Tsp45I	GTSAC	3 cut(s)	365, 496, 619
TspDTI	ATGAA	4 cut(s)	222, 244, 923, 1055
TspRI	CASTG	5 cut(s)	100, 151, 370, 519, 759
VpaK11BI	GGWCC	1 cut(s)	763
XagI	CCTNNNNNAGG	1 cut(s)	1003
XapI	RAATTY	1 cut(s)	932
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.