FvH4_2g05134

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
4231696 .. 4232485
790 bp
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UTR
Exon/CDS
Intron
FvH4_2g05134.t1

Sequence Viewer

Length: 414 bp
ATGGTTGATCTTGGGGCTGACGAGTACTTGGTTAGCACTGATGCCACCAAAATGCAAGAAGCTGCTGACTCTCTAGATTACATTATTGACACTGTGCCTGTCTTTCATCCTCTTGAGCCTTACCTTTCTTTGCTAAAACTCGATGGGAAATTGATCTTGCTTGGTGCTATTGATACCCCTCTACAATTCGCCTCCCCCATGATCATGCTTGGGAGGAAAACAATAACGGGGAGCTTCATAGGGAGCATGAAGGAGATGGAGGAAATGCTTATATTCTGCAAAGAGAAGGGAGTGACATCAATTATTGAAGTGGTTAAAATGGATTACATCAACAAAGCCATCGAAAGGTTGGAGAAGAACGATGTTAGATACAGGTTTGTTGTGGATGTTGCTGGCAGCAATCTTGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.35

Weight (kDa)

4.68

Isoelectric Point (pI)

24.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 3 - 92 1.4e-12 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 2 cut(s) 62, 234
AluI AGCT 2 cut(s) 62, 234
ApeKI GCWGC 2 cut(s) 62, 396
BbvI GCAGC 2 cut(s) 49, 408
BccI CCATC 3 cut(s) 137, 250, 347
BclI TGATCA 2 cut(s) 201, 406
BfaI CTAG 1 cut(s) 74
BisI GCNGC 2 cut(s) 63, 397
BlsI GCNGC 2 cut(s) 64, 398
BmcAI AGTACT 1 cut(s) 26
BmsI GCATC 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 106, 391
BseLI CCNNNNNNNGG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 49, 408
BslI CCNNNNNNNGG 1 cut(s) 345
Bsp143I GATC 4 cut(s) 7, 153, 201, 406
BssMI GATC 4 cut(s) 7, 153, 201, 406
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 394
BstF5I GGATG 2 cut(s) 106, 391
BstKTI GATC 4 cut(s) 10, 156, 204, 409
BstMBI GATC 4 cut(s) 7, 153, 201, 406
BstV1I GCAGC 2 cut(s) 49, 408
BtsCI GGATG 2 cut(s) 106, 391
BtsIMutI CAGTG 3 cut(s) 36, 90, 409
Cac8I GCNNGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 25
CviAII CATG 3 cut(s) 199, 205, 247
CviJI RGCY 5 cut(s) 17, 62, 118, 234, 338
CviKI_1 RGCY 5 cut(s) 17, 62, 118, 234, 338
CviQI GTAC 1 cut(s) 25
DpnI GATC 4 cut(s) 9, 155, 203, 408
DpnII GATC 4 cut(s) 7, 153, 201, 406
FaeI CATG 3 cut(s) 202, 208, 250
FaiI YATR 5 cut(s) 200, 206, 239, 248, 272
FatI CATG 3 cut(s) 198, 204, 246
FbaI TGATCA 2 cut(s) 201, 406
Fnu4HI GCNGC 2 cut(s) 63, 397
FokI GGATG 2 cut(s) 93, 398
Fsp4HI GCNGC 2 cut(s) 63, 397
FspBI CTAG 1 cut(s) 74
GluI GCNGC 2 cut(s) 63, 397
Hin1II CATG 3 cut(s) 202, 208, 250
HinfI GANTC 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 74, 113, 404
HpyAV CCTTC 2 cut(s) 244, 280
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 55, 279
Hsp92II CATG 3 cut(s) 202, 208, 250
Ksp22I TGATCA 2 cut(s) 201, 406
Kzo9I GATC 4 cut(s) 7, 153, 201, 406
LmnI GCTCC 2 cut(s) 231, 243
LpnPI CCDG 3 cut(s) 111, 358, 378
Lsp1109I GCAGC 2 cut(s) 49, 408
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 9, 155, 203, 408
MboI GATC 4 cut(s) 7, 153, 201, 406
MboII GAAGA 1 cut(s) 367
MluCI AATT 3 cut(s) 149, 185, 300
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 5 cut(s) 120, 189, 202, 207, 253
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 50, 203
NdeII GATC 4 cut(s) 7, 153, 201, 406
NlaIII CATG 3 cut(s) 202, 208, 250
NmuCI GTSAC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 64, 398
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 50, 203
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 63, 397
Sau3AI GATC 4 cut(s) 7, 153, 201, 406
ScaI AGTACT 1 cut(s) 26
SchI GAGTC 1 cut(s) 62
SetI ASST 5 cut(s) 64, 126, 236, 350, 377
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 2 cut(s) 50, 203
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 3 cut(s) 149, 185, 300
SspMI CTAG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 141, 342
TasI AATT 3 cut(s) 149, 185, 300
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 43, 97
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 62, 396
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 95, 226, 263
TspRI CASTG 2 cut(s) 43, 97
XbaI TCTAGA 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.