Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

10354364 .. 10355770

Gene Structure 1407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG066500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTCCGCAGCAGGCGGCGCCACTACTTTGCGCCGCGGTGACTGTGTATAGCCCTCTTCGGAAGTTTGGTCTGAATGCTAGTGGACTAAGAGGAGGAATACTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCGAAGGCCATGGGACACCATGTCACTGTGATAAGCTCTTCTGATAAGAAGCGACAGGAAGCTATGGTGGATATTGGGGCTCACGAGTACTTGGTTAGCTCTGATGCCGCAAAAATGCAAGAAGCTGCTGACTCTCTAGATTACATTATTGATACAGTGCCTGTGTTCCATCCTCTTGAGCCATACCTTCCTTTGCTGAAACTCGATGGGAAATTGATCTTGCTGGGTGCTATTGAGACCCCTCTACAATTCCTCTCCCCCATGATCTTGCTTGGGAGAAAAACAATCACGGGGAGCTTCATAGGGAGCATGAAGGAGATGGAGGAAATGCTTACATTCTGCAAAGAGAAAGGAGTAACATCAATTATTGAAGTGGTTAAAATGGATTACATCAACAAAGCCATCGAGAGGTTGGAGAAGAACGACGTTAGGTATAGGTTCGTTGTGGATGTTGCTGGCAGCAATCTTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

205

Amino Acids

22.29

Weight (kDa)

6.52

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	39 - 162	4.8e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	38
AciI	CCGC	5 cut(s)	8, 17, 36, 38, 249
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	512
AhdI	GACNNNNNGTC	1 cut(s)	161
AluBI	AGCT	5 cut(s)	177, 203, 240, 266, 438
AluI	AGCT	5 cut(s)	177, 203, 240, 266, 438
Alw26I	GTCTC	1 cut(s)	371
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	10, 266, 600
AspLEI	GCGC	2 cut(s)	22, 35
AsuHPI	GGTGA	2 cut(s)	52, 145
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	22, 253, 612
BccI	CCATC	4 cut(s)	318, 341, 454, 551
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	81, 278
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	6 cut(s)	11, 18, 36, 249, 267, 601
BlsI	GCNGC	6 cut(s)	12, 19, 37, 250, 268, 602
BmcAI	AGTACT	1 cut(s)	230
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	6, 21
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	36, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	36, 150
BseGI	GGATG	2 cut(s)	310, 595
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	3 cut(s)	22, 253, 612
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	19
BslFI	GGGAC	3 cut(s)	120, 135, 168
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	3 cut(s)	120, 135, 168
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	357, 405, 610
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	5 cut(s)	8, 17, 36, 38, 249
BspANI	GGCC	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	6, 21
BspQI	GCTCTTC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	2 cut(s)	36, 150
BssMI	GATC	3 cut(s)	357, 405, 610
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	3 cut(s)	46, 169, 298
Bst6I	CTCTTC	2 cut(s)	63, 184
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	15, 598
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	2 cut(s)	36, 150
BstF5I	GGATG	2 cut(s)	310, 595
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 35
BstKTI	GATC	3 cut(s)	360, 408, 613
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	3 cut(s)	357, 405, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	22, 253, 612
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	2 cut(s)	36, 150
BtsCI	GGATG	2 cut(s)	310, 595
BtsIMutI	CAGTG	2 cut(s)	165, 303
Cac8I	GCNNGC	2 cut(s)	15, 598
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	2 cut(s)	22, 35
Cfr42I	CCGCGG	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	5 cut(s)	127, 151, 161, 403, 451
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	1 cut(s)	89
DinI	GGCGCC	1 cut(s)	21
DpnI	GATC	3 cut(s)	359, 407, 612
DpnII	GATC	3 cut(s)	357, 405, 610
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	2 cut(s)	63, 184
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EarI	CTCTTC	2 cut(s)	63, 184
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	21
EheI	GGCGCC	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	130, 154, 164, 406, 454
FaqI	GGGAC	3 cut(s)	120, 135, 168
FatI	CATG	5 cut(s)	126, 150, 160, 402, 450
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	6 cut(s)	11, 18, 36, 249, 267, 601
FokI	GGATG	2 cut(s)	297, 602
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	6 cut(s)	11, 18, 36, 249, 267, 601
FspBI	CTAG	2 cut(s)	81, 278
GlaI	GCGC	2 cut(s)	21, 34
GluI	GCNGC	6 cut(s)	11, 18, 36, 249, 267, 601
GsaI	CCCAGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	22, 35
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	130, 154, 164, 406, 454
Hin6I	GCGC	2 cut(s)	20, 33
HinP1I	GCGC	2 cut(s)	20, 33
HinfI	GANTC	1 cut(s)	272
HphI	GGTGA	2 cut(s)	52, 145
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	4 cut(s)	63, 75, 184, 244
Hpy188III	TCNNGA	5 cut(s)	224, 278, 317, 547, 608
Hpy8I	GTNNAC	1 cut(s)	86
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	3 cut(s)	139, 338, 448
HpyCH4III	ACNGT	3 cut(s)	46, 169, 298
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	2 cut(s)	259, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	5 cut(s)	130, 154, 164, 406, 454
HspAI	GCGC	2 cut(s)	20, 33
KasI	GGCGCC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	357, 405, 610
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	3 cut(s)	10, 435, 447
LpnPI	CCDG	5 cut(s)	89, 182, 315, 350, 582
Lsp1109I	GCAGC	3 cut(s)	22, 253, 612
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	81, 278
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	3 cut(s)	40, 163, 496
MalI	GATC	3 cut(s)	359, 407, 612
MboI	GATC	3 cut(s)	357, 405, 610
MboII	GAAGA	4 cut(s)	50, 148, 171, 571
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	353, 389, 504
Mly113I	GGCGCC	1 cut(s)	20
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	9 cut(s)	66, 86, 89, 107, 324, 393, 404, 457, 543
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	82
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	19
NarI	GGCGCC	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	357, 405, 610
NlaIII	CATG	5 cut(s)	130, 154, 164, 406, 454
NlaIV	GGNNCC	2 cut(s)	6, 21
NmuCI	GTSAC	2 cut(s)	40, 163
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	82
PkrI	GCNGC	6 cut(s)	12, 19, 37, 250, 268, 602
PleI	GAGTC	1 cut(s)	266
PluTI	GGCGCC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	6, 21
PstNI	CAGNNNCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	131
SacII	CCGCGG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	6 cut(s)	11, 18, 36, 249, 267, 601
Sau3AI	GATC	3 cut(s)	357, 405, 610
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	21
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	353, 389, 504
SsiI	CCGC	5 cut(s)	8, 17, 36, 38, 249
SspDI	GGCGCC	1 cut(s)	19
SspMI	CTAG	2 cut(s)	81, 278
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	46, 169, 298
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	2 cut(s)	345, 546
TasI	AATT	3 cut(s)	353, 389, 504
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	3 cut(s)	20, 38, 251
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	2 cut(s)	172, 303
TseFI	GTSAC	2 cut(s)	40, 163
TseI	GCWGC	3 cut(s)	10, 266, 600
Tsp45I	GTSAC	2 cut(s)	40, 163
TspDTI	ATGAA	2 cut(s)	430, 467
TspRI	CASTG	2 cut(s)	172, 303
XbaI	TCTAGA	1 cut(s)	277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	2 cut(s)	81, 278
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.