Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8122326.1

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 528

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8122326.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 206 bp

tagggaggaagacaatcaccgggagctttgtggggagcatgaaggaggtggaggaaatgctcgagttctgcaaagagaaaggactaaaatcgatgatcgaagtggttaagatggactacatcaacgaagccttcgaaaggttggagaagaacgacgttaggtacaggttcgttgtggacgttgcgggcagcaatctggatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

67

Amino Acids

7.74

Weight (kDa)

5.1

Isoelectric Point (pI)

14.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	9
AsuII	TTCGAA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	21
Bsa29I	ATCGAT	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	95, 198
BspACI	CCGC	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	134
BssMI	GATC	2 cut(s)	95, 198
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	186
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	98, 201
BstMBI	GATC	2 cut(s)	95, 198
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	91
BsuTUI	ATCGAT	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	1 cut(s)	39
CviJI	RGCY	2 cut(s)	26, 130
CviKI_1	RGCY	2 cut(s)	26, 130
CviQI	GTAC	1 cut(s)	162
DpnI	GATC	2 cut(s)	97, 200
DpnII	GATC	2 cut(s)	95, 198
Eco88I	CYCGRG	1 cut(s)	61
EcoNI	CCTNNNNNAGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	42
FaiI	YATR	1 cut(s)	40
FatI	CATG	1 cut(s)	38
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	42
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	36, 141
HpyCH4IV	ACGT	2 cut(s)	155, 179
HpyCH4V	TGCA	1 cut(s)	71
HpySE526I	ACGT	2 cut(s)	155, 179
Hsp92II	CATG	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	95, 198
LmnI	GCTCC	2 cut(s)	23, 35
LpnPI	CCDG	3 cut(s)	33, 150, 181
Lsp1109I	GCAGC	1 cut(s)	200
MaeII	ACGT	2 cut(s)	155, 179
MalI	GATC	2 cut(s)	97, 200
MboI	GATC	2 cut(s)	95, 198
MboII	GAAGA	2 cut(s)	21, 159
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	39, 45
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	95, 198
NlaIII	CATG	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 176
PkrI	GCNGC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	61
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	95, 198
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	7 cut(s)	28, 50, 142, 158, 163, 169, 182
Sfr274I	CTCGAG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	134
SgeI	CNNG	7 cut(s)	32, 33, 51, 73, 75, 177, 197
SlaI	CTCGAG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SsiI	CCGC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	19
TaiI	ACGT	2 cut(s)	158, 182
TaqI	TCGA	4 cut(s)	62, 91, 98, 134
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	135
XhoI	CTCGAG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.