RLG00000017531

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001379
Physical Location & Seq
Forward (+)
17908895 .. 17910530
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017531

Sequence Viewer

Length: 1041 bp
ATGGAGGAAAGAAAGGCATTTGGTTGGGCTGCCAGAGACACTTCTGGGTTTCTCTCTCCCTTTTCATTCAATCTCAGATGTGTATTGAAGGTTCTGTACTGTGGCGTAGACCACACAGATCTTCATCAGATGAGGAATGAGATTCACAGTACTAATTATCCTTTGGTTCCAGGGCATGAAGTAGTGGGTGAAGTCGTGGAGTTGGGTTCAGAGGTGAAGAAATTTAGAGTTGGGGACATAGTGGGAGTTGGATGCATAGTGGGGTCTTGTGGAGAGTGCTTGTATTGCCAATCCAACATGGAGCAGTACTGCCGTAAGACAATCTTCACTATGAATGACACCTACAAAGATGGAAGCCTGACTCGCGGAGGCTTCTCCTCTGCCATGGTTGTTCATCAAAGGTTTGTGGTTCGGATACCAGAAAAGCTAGCACCGGAGCAGGCGGCTCCATTGCTGTGTGCTGGAGTTACAGCTTACAGTCCGCTGAAGCAATTCATGGGGCCTGACAGGGTTGTAAGGGGAGGCATATTGGGTTTAGGAGGAGTTGGACACTTGGGTGTCATAATTGCAAAGGCAATGGGTCACCATGTGACTGTGATAAGCTCTTCTAATAAGAAGAGGGAAGAGGCTTTGGAGATTTTAGGTGCAGATGCTTTTATAGTTGGCTCCAATGAGGCTGAGATGGAGGGAGCTGCCAGCAGCCTTGACTATATCCTTGACACTGTACCAGCTTTGCACCCTCTGCACTCTTACCTTTCACTCCTCAAGGTTGACGGTAAGCTCATAATAGTTGCTGCTGTTCCTCAACCGCTTCAGTTTGATGCAGTTGACATAATTCTAGGGAAGAGGAGCATTTCCAGGAGCTTCATCGGAAGCATGGAAGAAACGCAGGAAATACTGGAGTTCTGGGCAGACAAGGATTTGACGACTATGATAGAGATAGTAAAACTGGATTATGCTAACAAGGCATTTGAGAGAATGGAAAAAAATGATGTGAGGTTTAGGTTTGTCCTGGATGTAGCCGGAAGCAACCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

347

Amino Acids

38.01

Weight (kDa)

5.74

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 28 - 141 2.2e-24 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 181 - 302 6.8e-21 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 214 - 333 7.4e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 366
AciI CCGC 4 cut(s) 366, 443, 482, 809
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 2 cut(s) 506, 797
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 4 cut(s) 98, 151, 308, 726
AgsI TTSAA 2 cut(s) 70, 88
AjnI CCWGG 4 cut(s) 169, 857, 1011, 1032
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 7 cut(s) 427, 473, 603, 692, 731, 781, 864
AluI AGCT 7 cut(s) 427, 473, 603, 692, 731, 781, 864
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 4 cut(s) 29, 692, 699, 794
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 200, 226, 575
AsuNHI GCTAGC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BbvI GCAGC 4 cut(s) 16, 679, 711, 781
BccI CCATC 2 cut(s) 344, 676
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 4 cut(s) 171, 859, 1013, 1034
BciVI GTATCC 1 cut(s) 408
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 2 cut(s) 428, 839
BfuI GTATCC 1 cut(s) 408
BglII AGATCT 1 cut(s) 118
BisI GCNGC 5 cut(s) 30, 444, 693, 700, 795
BlsI GCNGC 5 cut(s) 31, 445, 694, 701, 796
BmcAI AGTACT 2 cut(s) 151, 308
Bme1390I CCNGG 4 cut(s) 171, 859, 1013, 1034
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 4 cut(s) 168, 447, 501, 667
BmrFI CCNGG 4 cut(s) 171, 859, 1013, 1034
BmsI GCATC 3 cut(s) 242, 640, 811
BmtI GCTAGC 1 cut(s) 431
BpmI CTGGAG 2 cut(s) 483, 920
BpuEI CTTGAG 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 170, 384
BsaWI WCCGGW 1 cut(s) 433
Bse1I ACTGG 2 cut(s) 903, 954
Bse3DI GCAATG 2 cut(s) 449, 582
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 4 cut(s) 171, 859, 1013, 1034
BseDI CCNNGG 2 cut(s) 170, 384
BseGI GGATG 2 cut(s) 257, 1021
BseJI GATNNNNATC 1 cut(s) 123
BseMI GCAATG 2 cut(s) 449, 582
BseMII CTCAG 2 cut(s) 88, 669
BseNI ACTGG 2 cut(s) 903, 954
BseRI GAGGAG 4 cut(s) 367, 555, 752, 862
BseXI GCAGC 4 cut(s) 16, 679, 711, 781
BsgI GTGCAG 2 cut(s) 666, 728
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 502
BsiSI CCGG 2 cut(s) 434, 1023
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 502
Bsp143I GATC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 4 cut(s) 366, 443, 482, 809
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 2 cut(s) 87, 670
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 4 cut(s) 168, 447, 501, 667
BspOI GCTAGC 1 cut(s) 431
BspQI GCTCTTC 1 cut(s) 610
BsrDI GCAATG 2 cut(s) 449, 582
BsrI ACTGG 2 cut(s) 903, 954
BssECI CCNNGG 2 cut(s) 170, 384
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 4 cut(s) 171, 859, 1013, 1034
Bst4CI ACNGT 6 cut(s) 101, 149, 479, 595, 724, 776
Bst6I CTCTTC 4 cut(s) 610, 611, 618, 839
BstAPI GCANNNNNTGC 1 cut(s) 742
BstC8I GCNNGC 3 cut(s) 429, 441, 697
BstDEI CTNAG 2 cut(s) 74, 678
BstDSI CCRYGG 1 cut(s) 384
BstEII GGTNACC 1 cut(s) 581
BstF5I GGATG 2 cut(s) 257, 1021
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 4 cut(s) 285, 363, 742, 965
BstNI CCWGG 4 cut(s) 171, 859, 1013, 1034
BstPI GGTNACC 1 cut(s) 581
BstSCI CCNGG 4 cut(s) 169, 857, 1011, 1032
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 4 cut(s) 16, 679, 711, 781
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 1 cut(s) 502
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 257, 1021
BtsIMutI CAGTG 1 cut(s) 720
Cac8I GCNNGC 3 cut(s) 429, 441, 697
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 4 cut(s) 97, 150, 307, 725
CviAII CATG 6 cut(s) 176, 298, 385, 496, 587, 877
CviQI GTAC 4 cut(s) 97, 150, 307, 725
DdeI CTNAG 2 cut(s) 74, 678
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
DraIII CACNNNGTG 1 cut(s) 589
Eam1104I CTCTTC 4 cut(s) 610, 611, 618, 839
EarI CTCTTC 4 cut(s) 610, 611, 618, 839
Eco130I CCWWGG 1 cut(s) 384
Eco57I CTGAAG 2 cut(s) 506, 797
Eco91I GGTNACC 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 500
EcoO65I GGTNACC 1 cut(s) 581
EcoRII CCWGG 4 cut(s) 169, 857, 1011, 1032
EcoT14I CCWWGG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 6 cut(s) 179, 301, 388, 499, 590, 880
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 1 cut(s) 248
FatI CATG 6 cut(s) 175, 297, 384, 495, 586, 876
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 5 cut(s) 30, 444, 693, 700, 795
FokI GGATG 2 cut(s) 264, 1028
Fsp4HI GCNGC 5 cut(s) 30, 444, 693, 700, 795
FspBI CTAG 2 cut(s) 428, 839
GluI GCNGC 5 cut(s) 30, 444, 693, 700, 795
GsuI CTGGAG 2 cut(s) 483, 920
HaeIII GGCC 1 cut(s) 502
HapII CCGG 2 cut(s) 434, 1023
Hin1II CATG 6 cut(s) 179, 301, 388, 499, 590, 880
HincII GTYRAC 2 cut(s) 772, 829
HindII GTYRAC 2 cut(s) 772, 829
HinfI GANTC 2 cut(s) 142, 361
HpaII CCGG 2 cut(s) 434, 1023
HphI GGTGA 3 cut(s) 200, 226, 575
Hpy166II GTNNAC 3 cut(s) 109, 772, 829
Hpy188I TCNGA 5 cut(s) 77, 129, 211, 414, 872
Hpy8I GTNNAC 3 cut(s) 109, 772, 829
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 6 cut(s) 101, 149, 479, 595, 724, 776
HpyCH4V TGCA 6 cut(s) 255, 569, 647, 736, 745, 824
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 363, 742, 965
HpyF3I CTNAG 2 cut(s) 74, 678
Hsp92II CATG 6 cut(s) 179, 301, 388, 499, 590, 880
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 7 cut(s) 301, 436, 451, 671, 689, 849, 861
Lsp1109I GCAGC 4 cut(s) 16, 679, 711, 781
LweI GCATC 3 cut(s) 242, 640, 811
MaeI CTAG 2 cut(s) 428, 839
MaeIII GTNAC 3 cut(s) 466, 581, 589
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 8 cut(s) 113, 229, 316, 597, 628, 635, 856, 893
MflI RGATCY 1 cut(s) 118
MluCI AATT 5 cut(s) 154, 221, 491, 564, 834
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 3 cut(s) 229, 318, 526
Mph1103I ATGCAT 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 491
MslI CAYNNNNRTG 2 cut(s) 454, 555
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 2 cut(s) 434, 1023
MspR9I CCNGG 4 cut(s) 171, 859, 1013, 1034
MvaI CCWGG 4 cut(s) 171, 859, 1013, 1034
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 4 cut(s) 285, 363, 742, 965
NcoI CCATGG 1 cut(s) 384
NdeII GATC 1 cut(s) 118
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 6 cut(s) 179, 301, 388, 499, 590, 880
NlaIV GGNNCC 4 cut(s) 168, 447, 501, 667
NmuCI GTSAC 2 cut(s) 581, 589
NsiI ATGCAT 1 cut(s) 257
OliI CACNNNNGTG 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 142
PfoI TCCNGGA 2 cut(s) 857, 1011
PkrI GCNGC 5 cut(s) 31, 445, 694, 701, 796
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 169, 857, 1011, 1032
PspEI GGTNACC 1 cut(s) 581
PspGI CCWGG 4 cut(s) 169, 857, 1011, 1032
PspN4I GGNNCC 4 cut(s) 168, 447, 501, 667
PspPI GGNCC 1 cut(s) 500
PsrI GAACNNNNNNTAC 2 cut(s) 75, 107
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 4 cut(s) 98, 151, 308, 726
RsaNI GTAC 4 cut(s) 97, 150, 307, 725
RseI CAYNNNNRTG 2 cut(s) 454, 555
SapI GCTCTTC 1 cut(s) 610
SatI GCNGC 5 cut(s) 30, 444, 693, 700, 795
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 500
ScaI AGTACT 2 cut(s) 151, 308
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 4 cut(s) 171, 859, 1013, 1034
SfaNI GCATC 3 cut(s) 242, 640, 811
SmiMI CAYNNNNRTG 2 cut(s) 454, 555
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 5 cut(s) 154, 221, 491, 564, 834
SsiI CCGC 4 cut(s) 366, 443, 482, 809
SspMI CTAG 2 cut(s) 428, 839
StyD4I CCNGG 4 cut(s) 169, 857, 1011, 1032
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 6 cut(s) 101, 149, 479, 595, 724, 776
TasI AATT 5 cut(s) 154, 221, 491, 564, 834
TatI WGTACW 3 cut(s) 96, 149, 306
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 2 cut(s) 581, 589
TseI GCWGC 4 cut(s) 29, 692, 699, 794
Tsp45I GTSAC 2 cut(s) 581, 589
TspDTI ATGAA 7 cut(s) 54, 113, 192, 347, 383, 484, 856
TspRI CASTG 1 cut(s) 727
XapI RAATTY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 428, 839
ZrmI AGTACT 2 cut(s) 151, 308
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.