Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTAGTCTTGAAGCGGAGAGAACAACTGTGGGATGGGCTGCAAGAGACTCTTCTGGGATTCTCTCACCTTACACCTATAATCTTAGGAGCACAGGGCCAGAAGATGTTTATATCAAAGTCCTGAACTGTGGAATTTGCCATTCTGATCTTCACCAGATCAAAAACGAACTTGGTCAGTCAAATTATCCCATGGTTGCAGGGCATGAAGTGGTTGGTGAAGTTTTGGAGGTGGGATCAGATGTGACCAAGTTCAAAGTAGGAGATGTTGTCGGAGTTGGACTCCTTGTAGGTTGCTGCAGAAACTGCAACCCATGCAAGACAGAGAATGAGCAATACTGCAACAAGAAGATCTGGTCTTACAATGACACTTACTCCGATGGCAAGCCCACCCAAGGTGGCTTTGCCAAATCCTTGGTGGCCGACCAAAAGTTTGTTGTGAATATACCGGAGGGCATGGAGCCGGAGCAGGTGGCGCCGCTGCTTTGTGCGGGAGTGACAATTTACAGCCCACTGAGGCACTTTGGTCTGGATGTGAGTGGATTAAGGGGAGGAATATTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCGAAGGCCATGGGACACCATGTCACTGTGATAAGCTCTTCTGATAAGAAGCGACAGGAAGCTATGGTGGATATTGGGGCTCACGAGTACTTGGTTAGCTCTGATGCCGCAAAAATGCAAGAAGCTGCTGACTCTCTAGATTACATTATTGATACAGTGCCTGTGTTCCATCCTCTTGGGCCATACCTTCCTTTGCTGAAACTCGATGGGAAATTGATCTTGCTGGGTGCTATTGAGACCCCTCTACAATTCCTCTCCCCCATGATCTTGCTTGGGAGAAAAACAATCACGGGGAGCTTCATAGGGAGCATGAAGGAGATGGAGGAAATGCTTACATTCTGCAAAGAGAAAGGAGTAACATCAATTATTGAAGTGGTTAAAATGGATTACATCAACAAAGCCATCGAGAGGTTGGAGAAGAACGACGTTAGGTATAGGTTCGTTGTGGATGTTGCTGGCAGCAATCTTGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

357

Amino Acids

38.84

Weight (kDa)

5.64

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	1.7e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	191 - 314	1e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	475
AciI	CCGC	4 cut(s)	17, 479, 491, 705
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	2 cut(s)	395, 1005
AgsI	TTSAA	3 cut(s)	14, 256, 968
AhdI	GACNNNNNGTC	1 cut(s)	617
AluBI	AGCT	5 cut(s)	633, 659, 696, 722, 894
AluI	AGCT	5 cut(s)	633, 659, 696, 722, 894
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	42, 827
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	2 cut(s)	306, 758
AoxI	GGCC	4 cut(s)	98, 420, 603, 776
ApeKI	GCWGC	5 cut(s)	41, 297, 481, 722, 1056
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	98, 776
AsuHPI	GGTGA	4 cut(s)	60, 146, 230, 601
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	679
BauI	CACGAG	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	5 cut(s)	28, 284, 468, 709, 1068
BccI	CCATC	6 cut(s)	30, 374, 774, 797, 910, 1007
BclI	TGATCA	1 cut(s)	1066
BcoDI	GTCTC	2 cut(s)	42, 827
BfaI	CTAG	1 cut(s)	734
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	7 cut(s)	42, 298, 479, 482, 705, 723, 1057
BlsI	GCNGC	7 cut(s)	43, 299, 480, 483, 706, 724, 1058
BmcAI	AGTACT	1 cut(s)	686
BmeRI	GACNNNNNGTC	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	98, 776
BmiI	GGNNCC	2 cut(s)	462, 477
BmsI	GCATC	1 cut(s)	691
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BsaHI	GRCGYC	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	4 cut(s)	192, 394, 414, 606
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 1005
BseDI	CCNNGG	4 cut(s)	192, 394, 414, 606
BseGI	GGATG	4 cut(s)	41, 538, 766, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	395, 1005
BseMII	CTCAG	1 cut(s)	506
BseXI	GCAGC	5 cut(s)	28, 284, 468, 709, 1068
BseYI	CCCAGC	1 cut(s)	820
BshFI	GGCC	4 cut(s)	100, 422, 605, 778
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	449, 464
BslFI	GGGAC	3 cut(s)	576, 591, 624
BslI	CCNNNNNNNGG	2 cut(s)	395, 1005
BsmAI	GTCTC	2 cut(s)	42, 827
BsmFI	GGGAC	3 cut(s)	576, 591, 624
BsnI	GGCC	4 cut(s)	100, 422, 605, 778
Bso31I	GGTCTC	1 cut(s)	827
Bsp1286I	GDGCHC	2 cut(s)	95, 679
Bsp143I	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
Bsp19I	CCATGG	2 cut(s)	192, 606
BspACI	CCGC	4 cut(s)	17, 479, 491, 705
BspANI	GGCC	4 cut(s)	100, 422, 605, 778
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	2 cut(s)	462, 477
BspMAI	CTGCAG	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	827
BssECI	CCNNGG	4 cut(s)	192, 394, 414, 606
BssMI	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
BssNI	GRCGYC	1 cut(s)	476
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	4 cut(s)	192, 394, 414, 606
Bst2BI	CACGAG	1 cut(s)	680
Bst4CI	ACNGT	4 cut(s)	31, 131, 625, 754
Bst6I	CTCTTC	2 cut(s)	58, 640
BstACI	GRCGYC	1 cut(s)	476
BstAPI	GCANNNNNTGC	2 cut(s)	306, 315
BstC8I	GCNNGC	2 cut(s)	386, 1054
BstDEI	CTNAG	2 cut(s)	86, 515
BstDSI	CCRYGG	2 cut(s)	192, 606
BstF5I	GGATG	4 cut(s)	41, 538, 766, 1051
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	7 cut(s)	151, 162, 239, 354, 816, 864, 1069
BstMAI	GTCTC	2 cut(s)	42, 827
BstMBI	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	5 cut(s)	28, 284, 468, 709, 1068
BstX2I	RGATCY	1 cut(s)	351
BstXI	CCANNNNNNTGG	2 cut(s)	415, 773
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	100, 422, 605, 778
BtgI	CCRYGG	2 cut(s)	192, 606
BtsCI	GGATG	4 cut(s)	41, 538, 766, 1051
BtsIMutI	CAGTG	3 cut(s)	512, 621, 759
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	386, 1054
CaiI	CAGNNNCTG	2 cut(s)	306, 758
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	98, 776
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	9 cut(s)	193, 206, 315, 457, 583, 607, 617, 859, 907
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	2 cut(s)	86, 515
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	7 cut(s)	150, 161, 238, 353, 815, 863, 1068
DpnII	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
DriI	GACNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	58, 640
Eam1105I	GACNNNNNGTC	1 cut(s)	617
EarI	CTCTTC	2 cut(s)	58, 640
Eco130I	CCWWGG	4 cut(s)	192, 394, 414, 606
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	827
EcoT14I	CCWWGG	4 cut(s)	192, 394, 414, 606
EcoT38I	GRGCYC	1 cut(s)	679
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	4 cut(s)	192, 394, 414, 606
FaeI	CATG	9 cut(s)	196, 209, 318, 460, 586, 610, 620, 862, 910
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	3 cut(s)	576, 591, 624
FatI	CATG	9 cut(s)	192, 205, 314, 456, 582, 606, 616, 858, 906
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	1066
Fnu4HI	GCNGC	7 cut(s)	42, 298, 479, 482, 705, 723, 1057
FokI	GGATG	4 cut(s)	48, 545, 753, 1058
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	7 cut(s)	42, 298, 479, 482, 705, 723, 1057
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	7 cut(s)	42, 298, 479, 482, 705, 723, 1057
GsaI	CCCAGC	1 cut(s)	824
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	100, 422, 605, 778
HapII	CCGG	2 cut(s)	449, 464
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	9 cut(s)	196, 209, 318, 460, 586, 610, 620, 862, 910
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	4 cut(s)	50, 61, 282, 728
HpaII	CCGG	2 cut(s)	449, 464
HphI	GGTGA	4 cut(s)	60, 146, 230, 601
Hpy188I	TCNGA	6 cut(s)	148, 241, 275, 379, 640, 700
Hpy188III	TCNNGA	7 cut(s)	11, 124, 530, 680, 734, 1003, 1064
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	3 cut(s)	595, 794, 904
HpyCH4III	ACNGT	4 cut(s)	31, 131, 625, 754
HpyCH4IV	ACGT	1 cut(s)	1023
HpyCH4V	TGCA	8 cut(s)	44, 200, 300, 309, 318, 342, 715, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
HpyF3I	CTNAG	2 cut(s)	86, 515
HpySE526I	ACGT	1 cut(s)	1023
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	9 cut(s)	196, 209, 318, 460, 586, 610, 620, 862, 910
HspAI	GCGC	1 cut(s)	476
KasI	GGCGCC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
LguI	GCTCTTC	1 cut(s)	640
LmnI	GCTCC	5 cut(s)	90, 460, 466, 891, 903
Lsp1109I	GCAGC	5 cut(s)	28, 284, 468, 709, 1068
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	1 cut(s)	734
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	4 cut(s)	244, 496, 619, 952
MalI	GATC	7 cut(s)	150, 161, 238, 353, 815, 863, 1068
MboI	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
MboII	GAAGA	7 cut(s)	45, 116, 143, 361, 604, 627, 1027
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	95, 679
MluCI	AATT	6 cut(s)	135, 184, 501, 809, 845, 960
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	44, 276, 722
MmeI	TCCRAC	3 cut(s)	253, 259, 990
MseI	TTAA	2 cut(s)	545, 975
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	2 cut(s)	449, 464
MwoI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
NarI	GGCGCC	1 cut(s)	476
NcoI	CCATGG	2 cut(s)	192, 606
NdeII	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
NlaIII	CATG	9 cut(s)	196, 209, 318, 460, 586, 610, 620, 862, 910
NlaIV	GGNNCC	2 cut(s)	462, 477
NmuCI	GTSAC	3 cut(s)	244, 496, 619
PaqCI	CACCTGC	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	7 cut(s)	43, 299, 480, 483, 706, 724, 1058
PleI	GAGTC	3 cut(s)	44, 276, 722
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	3 cut(s)	44, 276, 722
PspFI	CCCAGC	1 cut(s)	820
PspN4I	GGNNCC	2 cut(s)	462, 477
PspPI	GGNCC	2 cut(s)	98, 776
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	2 cut(s)	306, 758
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	640
SaqAI	TTAA	2 cut(s)	545, 975
SatI	GCNGC	7 cut(s)	42, 298, 479, 482, 705, 723, 1057
Sau3AI	GATC	7 cut(s)	148, 159, 236, 351, 813, 861, 1066
Sau96I	GGNCC	2 cut(s)	98, 776
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	3 cut(s)	44, 276, 722
SduI	GDGCHC	2 cut(s)	95, 679
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	587
Sse9I	AATT	6 cut(s)	135, 184, 501, 809, 845, 960
SsiI	CCGC	4 cut(s)	17, 479, 491, 705
SspDI	GGCGCC	1 cut(s)	475
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	1 cut(s)	734
StyI	CCWWGG	4 cut(s)	192, 394, 414, 606
TaaI	ACNGT	4 cut(s)	31, 131, 625, 754
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	2 cut(s)	801, 1002
TasI	AATT	6 cut(s)	135, 184, 501, 809, 845, 960
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	2 cut(s)	481, 707
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	545, 975
Tru9I	TTAA	2 cut(s)	545, 975
TscAI	CASTG	3 cut(s)	519, 628, 759
TseFI	GTSAC	3 cut(s)	244, 496, 619
TseI	GCWGC	5 cut(s)	41, 297, 481, 722, 1056
Tsp45I	GTSAC	3 cut(s)	244, 496, 619
TspDTI	ATGAA	3 cut(s)	222, 886, 923
TspRI	CASTG	3 cut(s)	519, 628, 759
XapI	RAATTY	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	2 cut(s)	415, 1006
XspI	CTAG	1 cut(s)	734
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.