Rroxscaffold_2G00136880

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001379
Physical Location & Seq
Reverse (-)
74554387 .. 74556077
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00136880.1

Sequence Viewer

Length: 990 bp
ATGGAGGAAAGCAGAAAGGCATTTGGTTGGGCTGCCAGAGACACTTCTGGGTTTCTCTCTCCCTTTTCATTCAATCTCAGGAAAATGGGGTCTGAAGATGTGGTATTGAAGGTTCTGTACTGTGGCGTAGACCACACAGATCTTCATCAGATGAGGAATGAGATTCACAGTACTAATTATCCTTTGGTTCCAGGGCATGAAGTAGTGGGTGAAGTGGTGGAGTTGGGTTCAGAGGTGAAGAAATTTAGAGTTGGGGACATAGTGGGAGTTGGATGCATAGTGGGGTCTTGTGGAGAGTGCTTGTATTGCCAATCCAACATGGAGCAGTACTGCCCTAAGACAATCTTCACTATGAATGACACCTACAAAGATGGAAGCCTGACTCGCGGAGGCTTCTCCTCTGCCATGGTTGTTCATCAAAGGTTTGTTGTTAGGATACCAGAAAAGCTAGCACCGGAGCAGGCGGCTCCATTGCTGTGTGCTGGAGTTACAGCTTACAGTCCGCTGAAGCAATTCATGGGGTCTGACAGGGTTGTAAGGGGAGGCATATTGGGTTTAGGAGGAGTTGGACACTTGGGTGTCATAATTGCAAAGGCAATGGGTCACCATGTGACTGTAATAAGCTCTTCTAATAAGAAGAGGGAAGAGGCTTTGGAGATTTTAGGTGCAGATGCTTTTATAGTTGGCTCCAATGAGGCTGAGATGGAGGGAGCTGCCAGCAGCCTTGACTATATCCTCGACACTGTACCAGCTTTGCACCCTCTGCACTCTTACCTTTCACTCCTCAAGGTTGACGGTAAGCTCATAATAGTTGTTGCTGTTCCTCAACCGCTTCAGTTTGATGCAGTTGACATAATTCTAGACAAGGATTTGACGACTATGATAGAGATAGTAAAACTGGATTATGCTAACAAGGCATTTGAGAGAATGGAAAAAAATGATGTGAGGTTTAGGTTTGTCCTGGATGTAGCAGGAAGCAACCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

329

Amino Acids

35.91

Weight (kDa)

5.61

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 31 - 148 9.3e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 188 - 290 2.6e-15 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 387
AciI CCGC 4 cut(s) 387, 464, 503, 830
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 3 cut(s) 114, 527, 818
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 4 cut(s) 119, 172, 329, 747
AgsI TTSAA 2 cut(s) 73, 109
AjnI CCWGG 3 cut(s) 190, 960, 981
AleI CACNNNNGTG 1 cut(s) 576
AluBI AGCT 6 cut(s) 448, 494, 624, 713, 752, 802
AluI AGCT 6 cut(s) 448, 494, 624, 713, 752, 802
Alw26I GTCTC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 32, 713, 720
ApoI RAATTY 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 512
AsuHPI GGTGA 3 cut(s) 221, 247, 596
AsuNHI GCTAGC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BbvI GCAGC 3 cut(s) 19, 700, 732
BccI CCATC 2 cut(s) 365, 697
BciT130I CCWGG 3 cut(s) 192, 962, 983
BciVI GTATCC 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 2 cut(s) 449, 860
BfuI GTATCC 1 cut(s) 429
BglII AGATCT 1 cut(s) 139
BisI GCNGC 4 cut(s) 33, 465, 714, 721
BlsI GCNGC 4 cut(s) 34, 466, 715, 722
BmcAI AGTACT 2 cut(s) 172, 329
Bme1390I CCNGG 3 cut(s) 192, 962, 983
BmiI GGNNCC 3 cut(s) 189, 468, 688
BmrFI CCNGG 3 cut(s) 192, 962, 983
BmsI GCATC 3 cut(s) 263, 661, 832
BmtI GCTAGC 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 191, 405
BsaWI WCCGGW 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 903
Bse3DI GCAATG 2 cut(s) 470, 603
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 3 cut(s) 192, 962, 983
BseDI CCNNGG 2 cut(s) 191, 405
BseGI GGATG 2 cut(s) 278, 970
BseJI GATNNNNATC 1 cut(s) 144
BseMI GCAATG 2 cut(s) 470, 603
BseMII CTCAG 2 cut(s) 91, 690
BseNI ACTGG 1 cut(s) 903
BseRI GAGGAG 3 cut(s) 388, 576, 773
BseXI GCAGC 3 cut(s) 19, 700, 732
BsgI GTGCAG 2 cut(s) 687, 749
Bsh1236I CGCG 1 cut(s) 387
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 4 cut(s) 387, 464, 503, 830
BspCNI CTCAG 2 cut(s) 90, 691
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 189, 468, 688
BspOI GCTAGC 1 cut(s) 452
BspQI GCTCTTC 1 cut(s) 631
BsrDI GCAATG 2 cut(s) 470, 603
BsrI ACTGG 1 cut(s) 903
BssECI CCNNGG 2 cut(s) 191, 405
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 3 cut(s) 192, 962, 983
Bst4CI ACNGT 6 cut(s) 122, 170, 500, 616, 745, 797
Bst6I CTCTTC 3 cut(s) 631, 632, 639
BstAPI GCANNNNNTGC 1 cut(s) 763
BstC8I GCNNGC 3 cut(s) 450, 462, 718
BstDEI CTNAG 3 cut(s) 77, 336, 699
BstDSI CCRYGG 1 cut(s) 405
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 2 cut(s) 278, 970
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 306, 384, 763, 914
BstNI CCWGG 3 cut(s) 192, 962, 983
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 190, 960, 981
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 19, 700, 732
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuI GTATCC 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 2 cut(s) 278, 970
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 3 cut(s) 450, 462, 718
Csp6I GTAC 4 cut(s) 118, 171, 328, 746
CviAII CATG 5 cut(s) 197, 319, 406, 517, 608
CviQI GTAC 4 cut(s) 118, 171, 328, 746
DdeI CTNAG 3 cut(s) 77, 336, 699
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 610
Eam1104I CTCTTC 3 cut(s) 631, 632, 639
EarI CTCTTC 3 cut(s) 631, 632, 639
Eco130I CCWWGG 1 cut(s) 405
Eco57I CTGAAG 3 cut(s) 114, 527, 818
Eco91I GGTNACC 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 190, 960, 981
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 5 cut(s) 200, 322, 409, 520, 611
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 269
FatI CATG 5 cut(s) 196, 318, 405, 516, 607
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 33, 465, 714, 721
FokI GGATG 2 cut(s) 285, 977
Fsp4HI GCNGC 4 cut(s) 33, 465, 714, 721
FspBI CTAG 2 cut(s) 449, 860
GluI GCNGC 4 cut(s) 33, 465, 714, 721
GsuI CTGGAG 1 cut(s) 504
HapII CCGG 1 cut(s) 455
Hin1II CATG 5 cut(s) 200, 322, 409, 520, 611
HincII GTYRAC 2 cut(s) 793, 850
HindII GTYRAC 2 cut(s) 793, 850
HinfI GANTC 2 cut(s) 163, 382
HpaII CCGG 1 cut(s) 455
HphI GGTGA 3 cut(s) 221, 247, 596
Hpy166II GTNNAC 3 cut(s) 130, 793, 850
Hpy188I TCNGA 4 cut(s) 94, 150, 232, 526
Hpy188III TCNNGA 2 cut(s) 79, 860
Hpy8I GTNNAC 3 cut(s) 130, 793, 850
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 6 cut(s) 122, 170, 500, 616, 745, 797
HpyCH4V TGCA 6 cut(s) 276, 590, 668, 757, 766, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 306, 384, 763, 914
HpyF3I CTNAG 3 cut(s) 77, 336, 699
Hsp92II CATG 5 cut(s) 200, 322, 409, 520, 611
Kzo9I GATC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 631
LmnI GCTCC 5 cut(s) 322, 457, 472, 692, 710
Lsp1109I GCAGC 3 cut(s) 19, 700, 732
LweI GCATC 3 cut(s) 263, 661, 832
MaeI CTAG 2 cut(s) 449, 860
MaeIII GTNAC 3 cut(s) 487, 602, 610
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 7 cut(s) 107, 134, 250, 337, 618, 649, 656
MflI RGATCY 1 cut(s) 139
MluCI AATT 5 cut(s) 175, 242, 512, 585, 855
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 3 cut(s) 250, 339, 547
Mph1103I ATGCAT 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 475, 576
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 3 cut(s) 192, 962, 983
MvaI CCWGG 3 cut(s) 192, 962, 983
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 4 cut(s) 306, 384, 763, 914
NcoI CCATGG 1 cut(s) 405
NdeII GATC 1 cut(s) 139
NheI GCTAGC 1 cut(s) 448
NlaIII CATG 5 cut(s) 200, 322, 409, 520, 611
NlaIV GGNNCC 3 cut(s) 189, 468, 688
NmuCI GTSAC 2 cut(s) 602, 610
NsiI ATGCAT 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 960
PkrI GCNGC 4 cut(s) 34, 466, 715, 722
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp6I CCWGG 3 cut(s) 190, 960, 981
PspEI GGTNACC 1 cut(s) 602
PspGI CCWGG 3 cut(s) 190, 960, 981
PspN4I GGNNCC 3 cut(s) 189, 468, 688
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 4 cut(s) 119, 172, 329, 747
RsaNI GTAC 4 cut(s) 118, 171, 328, 746
RseI CAYNNNNRTG 2 cut(s) 475, 576
SapI GCTCTTC 1 cut(s) 631
SatI GCNGC 4 cut(s) 33, 465, 714, 721
Sau3AI GATC 1 cut(s) 139
ScaI AGTACT 2 cut(s) 172, 329
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 3 cut(s) 192, 962, 983
SfaNI GCATC 3 cut(s) 263, 661, 832
SmiMI CAYNNNNRTG 2 cut(s) 475, 576
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 5 cut(s) 175, 242, 512, 585, 855
SsiI CCGC 4 cut(s) 387, 464, 503, 830
SspMI CTAG 2 cut(s) 449, 860
StyD4I CCNGG 3 cut(s) 190, 960, 981
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 6 cut(s) 122, 170, 500, 616, 745, 797
TaqI TCGA 1 cut(s) 738
TasI AATT 5 cut(s) 175, 242, 512, 585, 855
TatI WGTACW 3 cut(s) 117, 170, 327
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 2 cut(s) 602, 610
TseI GCWGC 3 cut(s) 32, 713, 720
Tsp45I GTSAC 2 cut(s) 602, 610
TspDTI ATGAA 6 cut(s) 57, 134, 213, 368, 404, 505
TspRI CASTG 1 cut(s) 748
XapI RAATTY 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 2 cut(s) 449, 860
ZrmI AGTACT 2 cut(s) 172, 329
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.