Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003745.1

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

8868 .. 11132

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003745.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgggtagtcttgaagtggagagaacaactgtgggatgggctgcaagagactcttctgggattctctcaccttacacctataatcttaggagcacagggccagaagatgtttatatcaaagtcctgaactgtggaatttgccattccgatcttcaccagatcaaaaacgaacttggccagtcaaattatcccatggttgcagggcatgaagtggttggtgaagttttggaggtgggatcagatgtgaccaagttcaaaataggagatgttgtcggagttggactccttgtaggttgctgcagaaactgcgacccatgcaagacagagaatgagaaatactgcaacaagaagatctggtcttacaataacacatactccgatggcaagcccacgcaaggtggctttgccaaatccttggtggccgaccaaaagtttgtggtgaagataccggagggcatggaaccggagcaggtggcgccgctgctttgtgcgggagtgacaatttacagcccactgaggcactttggtctggatgtgagtggattaaggggaggaatattgggacttggaggtgtgggacacatgggggaggctatggactcaatggattacattattgacactattcctgtgttccaccctcttgagccttacctctctttgttgaaacttgatgggaaattgatcttgatgggtgttatcaacacccctttgcaatttgtctctccattggtcatgcttgggaggaagacaatcaccgggagctttgtggggagcatgaaggaggtggaggaaatgctcgagttctgcaaagagaaaggactaaaatcgatgatcgaagtggttaagatggactacatcaacgaagccttcgaaaggttggagaagaacgacgttaggtacaggttcgttgtggacgttgcgggcagcaatctggatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

314

Amino Acids

34.47

Weight (kDa)

5.27

Isoelectric Point (pI)

23.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	475
AciI	CCGC	3 cut(s)	479, 491, 923
AclWI	GGATC	1 cut(s)	244
AcoI	YGGCCR	2 cut(s)	175, 420
AcsI	RAATTY	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	1 cut(s)	902
AfiI	CCNNNNNNNGG	2 cut(s)	395, 876
AgsI	TTSAA	3 cut(s)	14, 256, 667
AluBI	AGCT	1 cut(s)	765
AluI	AGCT	1 cut(s)	765
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	42, 727
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	3 cut(s)	98, 175, 420
ApeKI	GCWGC	4 cut(s)	41, 297, 481, 927
ApoI	RAATTY	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	760
AsuHPI	GGTGA	5 cut(s)	60, 146, 230, 451, 748
AsuII	TTCGAA	1 cut(s)	873
AvaI	CYCGRG	1 cut(s)	800
BalI	TGGCCA	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	4 cut(s)	28, 284, 468, 939
BccI	CCATC	5 cut(s)	30, 374, 668, 685, 844
BcnI	CCSGG	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	42, 727
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	460
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	5 cut(s)	42, 298, 479, 482, 928
BlsI	GCNGC	5 cut(s)	43, 299, 480, 483, 929
Bme1390I	CCNGG	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	462, 477
BmrFI	CCNGG	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	755
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	760
Bsa29I	ATCGAT	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	192, 414
BsaWI	WCCGGW	2 cut(s)	448, 463
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 359, 389
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 876
Bse1I	ACTGG	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	830
BseDI	CCNNGG	2 cut(s)	192, 414
BseGI	GGATG	2 cut(s)	41, 538
BseLI	CCNNNNNNNGG	2 cut(s)	395, 876
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	28, 284, 468, 939
BshFI	GGCC	3 cut(s)	100, 177, 422
BshNI	GGYRCC	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	830
BsiHKAI	GWGCWC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	3 cut(s)	449, 464, 759
BslFI	GGGAC	2 cut(s)	576, 591
BslI	CCNNNNNNNGG	2 cut(s)	395, 876
BsmAI	GTCTC	2 cut(s)	42, 727
BsmFI	GGGAC	2 cut(s)	576, 591
BsnI	GGCC	3 cut(s)	100, 177, 422
BsoBI	CYCGRG	1 cut(s)	800
Bsp119I	TTCGAA	1 cut(s)	873
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	3 cut(s)	479, 491, 923
BspANI	GGCC	3 cut(s)	100, 177, 422
BspCNI	CTCAG	1 cut(s)	507
BspDI	ATCGAT	1 cut(s)	830
BspLI	GGNNCC	2 cut(s)	462, 477
BspMAI	CTGCAG	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	192, 414
BssMI	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	2 cut(s)	192, 414
Bst4CI	ACNGT	2 cut(s)	31, 131
Bst6I	CTCTTC	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	2 cut(s)	386, 925
BstDEI	CTNAG	2 cut(s)	86, 515
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	874
BstF5I	GGATG	2 cut(s)	41, 538
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	7 cut(s)	151, 162, 239, 354, 687, 837, 940
BstMAI	GTCTC	2 cut(s)	42, 727
BstMBI	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
BstSCI	CCNGG	1 cut(s)	758
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	4 cut(s)	28, 284, 468, 939
BstV2I	GAAGAC	1 cut(s)	755
BstX2I	RGATCY	1 cut(s)	351
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	100, 177, 422
BsuTUI	ATCGAT	1 cut(s)	830
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	41, 538
BtsIMutI	CAGTG	1 cut(s)	512
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	386, 925
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	830
Csp6I	GTAC	1 cut(s)	901
CviAII	CATG	7 cut(s)	193, 206, 315, 457, 583, 736, 778
CviQI	GTAC	1 cut(s)	901
DdeI	CTNAG	2 cut(s)	86, 515
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	7 cut(s)	150, 161, 238, 353, 686, 836, 939
DpnII	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
EaeI	YGGCCR	2 cut(s)	175, 420
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	192, 414
Eco88I	CYCGRG	1 cut(s)	800
EcoNI	CCTNNNNNAGG	1 cut(s)	874
EcoT14I	CCWWGG	2 cut(s)	192, 414
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
ErhI	CCWWGG	2 cut(s)	192, 414
FaeI	CATG	7 cut(s)	196, 209, 318, 460, 586, 739, 781
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	576, 591
FatI	CATG	7 cut(s)	192, 205, 314, 456, 582, 735, 777
FauI	CCCGC	2 cut(s)	484, 916
Fnu4HI	GCNGC	5 cut(s)	42, 298, 479, 482, 928
FokI	GGATG	2 cut(s)	48, 545
Fsp4HI	GCNGC	5 cut(s)	42, 298, 479, 482, 928
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	5 cut(s)	42, 298, 479, 482, 928
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	100, 177, 422
HapII	CCGG	3 cut(s)	449, 464, 759
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	7 cut(s)	196, 209, 318, 460, 586, 739, 781
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	4 cut(s)	50, 61, 282, 599
HpaII	CCGG	3 cut(s)	449, 464, 759
HphI	GGTGA	5 cut(s)	60, 146, 230, 451, 748
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	4 cut(s)	148, 241, 275, 379
Hpy188III	TCNNGA	6 cut(s)	11, 124, 530, 644, 688, 935
Hpy8I	GTNNAC	1 cut(s)	916
Hpy99I	CGWCG	1 cut(s)	896
HpyAV	CCTTC	2 cut(s)	775, 880
HpyCH4III	ACNGT	2 cut(s)	31, 131
HpyCH4IV	ACGT	2 cut(s)	894, 918
HpyCH4V	TGCA	7 cut(s)	44, 200, 300, 318, 342, 715, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
HpyF3I	CTNAG	2 cut(s)	86, 515
HpySE526I	ACGT	2 cut(s)	894, 918
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	7 cut(s)	196, 209, 318, 460, 586, 739, 781
HspAI	GCGC	1 cut(s)	476
KasI	GGCGCC	1 cut(s)	475
Kzo9I	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
LmnI	GCTCC	4 cut(s)	90, 466, 762, 774
Lsp1109I	GCAGC	4 cut(s)	28, 284, 468, 939
MaeII	ACGT	2 cut(s)	894, 918
MaeIII	GTNAC	2 cut(s)	244, 496
MalI	GATC	7 cut(s)	150, 161, 238, 353, 686, 836, 939
MboI	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
MboII	GAAGA	7 cut(s)	45, 116, 143, 361, 454, 760, 898
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	5 cut(s)	135, 184, 501, 680, 716
MluNI	TGGCCA	1 cut(s)	177
Mly113I	GGCGCC	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	44, 276, 593
MmeI	TCCRAC	3 cut(s)	253, 259, 861
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	2 cut(s)	545, 846
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	3 cut(s)	449, 464, 759
MspR9I	CCNGG	1 cut(s)	760
MwoI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
NarI	GGCGCC	1 cut(s)	476
NciI	CCSGG	1 cut(s)	760
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
NlaIII	CATG	7 cut(s)	196, 209, 318, 460, 586, 739, 781
NlaIV	GGNNCC	2 cut(s)	462, 477
NmuCI	GTSAC	2 cut(s)	244, 496
NspV	TTCGAA	1 cut(s)	873
PaeR7I	CTCGAG	1 cut(s)	800
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	870, 915
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	43, 299, 480, 483, 929
PleI	GAGTC	3 cut(s)	44, 276, 593
PluTI	GGCGCC	1 cut(s)	479
PpsI	GAGTC	3 cut(s)	44, 276, 593
PspN4I	GGNNCC	2 cut(s)	462, 477
PspPI	GGNCC	1 cut(s)	98
PspXI	VCTCGAGB	1 cut(s)	800
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	1 cut(s)	902
RsaNI	GTAC	1 cut(s)	901
SaqAI	TTAA	2 cut(s)	545, 846
SatI	GCNGC	5 cut(s)	42, 298, 479, 482, 928
Sau3AI	GATC	7 cut(s)	148, 159, 236, 351, 684, 834, 937
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	3 cut(s)	44, 276, 593
ScrFI	CCNGG	1 cut(s)	760
SduI	GDGCHC	1 cut(s)	95
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	477
Sfr274I	CTCGAG	1 cut(s)	800
SfuI	TTCGAA	1 cut(s)	873
SlaI	CTCGAG	1 cut(s)	800
SmlI	CTYRAG	2 cut(s)	644, 800
SmoI	CTYRAG	2 cut(s)	644, 800
Sse9I	AATT	5 cut(s)	135, 184, 501, 680, 716
SsiI	CCGC	3 cut(s)	479, 491, 923
SspDI	GGCGCC	1 cut(s)	475
SspI	AATATT	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	758
StyI	CCWWGG	2 cut(s)	192, 414
TaaI	ACNGT	2 cut(s)	31, 131
TaiI	ACGT	2 cut(s)	897, 921
TaqI	TCGA	4 cut(s)	801, 830, 837, 873
TasI	AATT	5 cut(s)	135, 184, 501, 680, 716
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	545, 846
Tru9I	TTAA	2 cut(s)	545, 846
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	244, 496
TseI	GCWGC	4 cut(s)	41, 297, 481, 927
Tsp45I	GTSAC	2 cut(s)	244, 496
TspDTI	ATGAA	2 cut(s)	222, 794
TspRI	CASTG	1 cut(s)	519
XagI	CCTNNNNNAGG	1 cut(s)	874
XapI	RAATTY	1 cut(s)	135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.