FvH4_2g05132

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
4226793 .. 4229438
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05132.t2

Sequence Viewer

Length: 1158 bp
ATGCACCACTGCTTCTCTCTTCCCCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAACTCGAGCAGAAACACAAGAATAATGGGTAGTCTTGAAGAGGAGAGAACAACTGTGGGATGGGCTGCAAGAGACTCTTCTGGGATTCTCTCACCTTACACCTATTCTCTTAGAAGCACAGGTCCAGAAGATGTTTATATCAAAGTCCTCAACTGTGGAATTTGCCATTCTGATCTTCACCAGATCAAAAATGAACTTGGGCAATCAAACTATCCCATGGTTGCTGGGCACGAAGTGGTTGGTGAGGTTTTGGAGGTGGGATCAGATGTGACCAAGTTCAAAGTAGGAGATTTGGTCGGAGTCGGACTCCTTGTAGGTTGCTGCAGAAACTGCAGCCCATGCAAGACAGAGAATGAGCAATACTGCAACAAGAAGATCTGGTCTTACAATGACACCTACTCTGATGGCAAACCCACCCAAGGTGGCTTTGCCAAAGCCTTGGTTGCCGACCAAAAGTTTGTGGTGAAGGTACCGGAGGGGATGGAGCCGGAGCAGGTGGCCCCGCTACTTTGTGCCGGGGTGACAATTTACAGCCCACTGAGGCACTTTGGTCTGGATGTGAGTGGATTAAGGGGAGGGATATTGGGACTTGGAGGTGTTGGACACATGGGGGTGAAGATAGCAAAGGCTATGGGACACCATATCACCGTGATAAGCTCTTCTGATAAGAAGAAAAAAGAGGCCTTGGAGCATATTGGTGCTGATGAGTACTTGGTGAGCTCTGATGCCACCCAAATGCAAGAGGCTATGGACTCACTGGATTACATTATTGACACCATTCCAGTGTTCCACCCTCTTGAGCCTTACCTCTCTTTGTTGAAGCTTGATGGGAAGTTGATCTTGATGGGTGTTATCAACACCCCATTGCAATTTGTCTCTCCATTGGTCATGCTTGGGAGGAAGACGATCACCGGGAGCTTTGTGGGGAGCATGAAGGAGATGGAGGAGATGCTCGAGTTCTGCAAAGAGAAAGAGCTGAAATCGATGATTGAAGTGGTGAAGATGGACTACATCAACGAAGCTTTCGAAAGGTTGGAGAAGAACGACGTTAGGTACAGGTTCGTTGTGGATGTTGCCGGCAGCAATCTTGATCAATAA

Protein Analysis

386

Amino Acids

42.29

Weight (kDa)

5.68

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 151 3.1e-27 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 544
Acc65I GGTACC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 529
AciI CCGC 1 cut(s) 563
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 1 cut(s) 219
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 3 cut(s) 531, 770, 1115
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 4 cut(s) 98, 340, 880, 1052
AluBI AGCT 6 cut(s) 717, 780, 883, 978, 1036, 1082
AluI AGCT 6 cut(s) 717, 780, 883, 978, 1036, 1082
Alw21I GWGCWC 1 cut(s) 782
Alw26I GTCTC 2 cut(s) 126, 940
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 390
Ama87I CYCGRG 2 cut(s) 64, 1013
AoxI GGCC 2 cut(s) 558, 741
ApeKI GCWGC 4 cut(s) 125, 381, 393, 1140
ApoI RAATTY 1 cut(s) 219
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
Asp718I GGTACC 1 cut(s) 529
AspS9I GGNCC 2 cut(s) 182, 559
AsuC2I CCSGG 2 cut(s) 577, 973
AsuII TTCGAA 1 cut(s) 1086
AvaI CYCGRG 2 cut(s) 64, 1013
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 782
BarI GAAGNNNNNNTAC 2 cut(s) 1052, 1084
BbsI GAAGAC 1 cut(s) 968
Bbv12I GWGCWC 1 cut(s) 782
BbvI GCAGC 4 cut(s) 112, 368, 405, 1152
BccI CCATC 7 cut(s) 114, 458, 535, 881, 898, 994, 1057
BclI TGATCA 1 cut(s) 1150
BcnI CCSGG 2 cut(s) 577, 973
BcoDI GTCTC 2 cut(s) 126, 940
BfmI CTRYAG 2 cut(s) 382, 391
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 435
BisI GCNGC 4 cut(s) 126, 382, 394, 1141
BlsI GCNGC 4 cut(s) 127, 383, 395, 1142
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 2 cut(s) 577, 973
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 2 cut(s) 64, 1013
BmgT120I GGNCC 2 cut(s) 182, 559
BmiI GGNNCC 3 cut(s) 531, 546, 561
BmrFI CCNGG 2 cut(s) 577, 973
BmsI GCATC 2 cut(s) 775, 999
BpiI GAAGAC 1 cut(s) 968
BplI GAGNNNNNCTC 2 cut(s) 351, 383
Bpu14I TTCGAA 1 cut(s) 1086
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 2 cut(s) 577, 973
Bsa29I ATCGAT 1 cut(s) 1043
BsaJI CCNNGG 5 cut(s) 276, 478, 498, 576, 744
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse118I RCCGGY 1 cut(s) 1136
Bse1I ACTGG 2 cut(s) 822, 842
Bse3DI GCAATG 1 cut(s) 923
BseCI ATCGAT 1 cut(s) 1043
BseDI CCNNGG 5 cut(s) 276, 478, 498, 576, 744
BseGI GGATG 4 cut(s) 125, 546, 622, 1135
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 923
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 822, 842
BseRI GAGGAG 2 cut(s) 116, 1019
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 4 cut(s) 112, 368, 405, 1152
BseYI CCCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 560, 743
BshNI GGYRCC 1 cut(s) 529
BshVI ATCGAT 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 782
BsiHKCI CYCGRG 2 cut(s) 64, 1013
BsiSI CCGG 5 cut(s) 533, 548, 576, 972, 1137
BslFI GGGAC 2 cut(s) 660, 708
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 2 cut(s) 126, 940
BsmFI GGGAC 2 cut(s) 660, 708
BsnI GGCC 2 cut(s) 560, 743
BsoBI CYCGRG 2 cut(s) 64, 1013
Bsp119I TTCGAA 1 cut(s) 1086
Bsp1286I GDGCHC 2 cut(s) 291, 782
Bsp143I GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 563
BspANI GGCC 2 cut(s) 560, 743
BspCNI CTCAG 1 cut(s) 591
BspDI ATCGAT 1 cut(s) 1043
BspLI GGNNCC 3 cut(s) 531, 546, 561
BspMAI CTGCAG 2 cut(s) 386, 395
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 724
BspT104I TTCGAA 1 cut(s) 1086
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 1136
BsrI ACTGG 2 cut(s) 822, 842
BssAI RCCGGY 1 cut(s) 1136
BssECI CCNNGG 5 cut(s) 276, 478, 498, 576, 744
BssMI GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
BssT1I CCWWGG 4 cut(s) 276, 478, 498, 744
Bst4CI ACNGT 3 cut(s) 115, 215, 709
Bst6I CTCTTC 4 cut(s) 24, 93, 142, 724
BstAPI GCANNNNNTGC 2 cut(s) 390, 399
BstBI TTCGAA 1 cut(s) 1086
BstC8I GCNNGC 1 cut(s) 1138
BstDEI CTNAG 2 cut(s) 170, 599
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 125, 546, 622, 1135
BstKTI GATC 7 cut(s) 235, 246, 323, 438, 900, 969, 1153
BstMAI GTCTC 2 cut(s) 126, 940
BstMBI GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
BstMWI GCNNNNNNNGC 3 cut(s) 390, 399, 503
BstSCI CCNGG 2 cut(s) 575, 971
BstSFI CTRYAG 2 cut(s) 382, 391
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 4 cut(s) 112, 368, 405, 1152
BstV2I GAAGAC 1 cut(s) 968
BstX2I RGATCY 1 cut(s) 435
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 1043
BsuRI GGCC 2 cut(s) 560, 743
BsuTUI ATCGAT 1 cut(s) 1043
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 4 cut(s) 125, 546, 622, 1135
BtsI GCAGTG 1 cut(s) 7
BtsIMutI CAGTG 4 cut(s) 7, 596, 815, 849
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 1138
CaiI CAGNNNCTG 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 1136
Cfr13I GGNCC 2 cut(s) 182, 559
ClaI ATCGAT 1 cut(s) 1043
Csp6I GTAC 3 cut(s) 530, 769, 1114
CviAII CATG 5 cut(s) 277, 399, 667, 949, 991
CviQI GTAC 3 cut(s) 530, 769, 1114
DdeI CTNAG 2 cut(s) 170, 599
DpnI GATC 7 cut(s) 234, 245, 322, 437, 899, 968, 1152
DpnII GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
DraIII CACNNNGTG 1 cut(s) 295
Eam1104I CTCTTC 4 cut(s) 24, 93, 142, 724
EarI CTCTTC 4 cut(s) 24, 93, 142, 724
Ecl136II GAGCTC 1 cut(s) 780
Eco130I CCWWGG 4 cut(s) 276, 478, 498, 744
Eco147I AGGCCT 1 cut(s) 743
Eco24I GRGCYC 1 cut(s) 782
Eco47I GGWCC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 780
Eco88I CYCGRG 2 cut(s) 64, 1013
EcoICRI GAGCTC 1 cut(s) 780
EcoT14I CCWWGG 4 cut(s) 276, 478, 498, 744
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 4 cut(s) 276, 478, 498, 744
FaeI CATG 5 cut(s) 280, 402, 670, 952, 994
FalI AAGNNNNNCTT 4 cut(s) 121, 153, 884, 916
FaqI GGGAC 2 cut(s) 660, 708
FatI CATG 5 cut(s) 276, 398, 666, 948, 990
FauI CCCGC 1 cut(s) 570
FbaI TGATCA 1 cut(s) 1150
Fnu4HI GCNGC 4 cut(s) 126, 382, 394, 1141
FokI GGATG 4 cut(s) 132, 553, 629, 1142
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 4 cut(s) 126, 382, 394, 1141
GluI GCNGC 4 cut(s) 126, 382, 394, 1141
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 2 cut(s) 560, 743
HapII CCGG 5 cut(s) 533, 548, 576, 972, 1137
Hin1II CATG 5 cut(s) 280, 402, 670, 952, 994
HindIII AAGCTT 2 cut(s) 881, 1080
HinfI GANTC 5 cut(s) 134, 145, 360, 366, 812
HpaII CCGG 5 cut(s) 533, 548, 576, 972, 1137
Hpy188I TCNGA 7 cut(s) 232, 325, 359, 365, 463, 724, 784
Hpy188III TCNNGA 6 cut(s) 95, 185, 614, 857, 901, 1148
Hpy99I CGWCG 1 cut(s) 1109
HpyAV CCTTC 2 cut(s) 520, 988
HpyCH4III ACNGT 3 cut(s) 115, 215, 709
HpyCH4IV ACGT 1 cut(s) 1107
HpyCH4V TGCA 9 cut(s) 4, 128, 384, 393, 402, 426, 799, 928, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 390, 399, 503
HpyF3I CTNAG 2 cut(s) 170, 599
HpySE526I ACGT 1 cut(s) 1107
Hsp92II CATG 5 cut(s) 280, 402, 670, 952, 994
KpnI GGTACC 1 cut(s) 533
KroI GCCGGC 1 cut(s) 1136
KroNI GCCGGC 1 cut(s) 1138
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 5 cut(s) 544, 550, 748, 975, 987
Lsp1109I GCAGC 4 cut(s) 112, 368, 405, 1152
LweI GCATC 2 cut(s) 775, 999
MaeII ACGT 1 cut(s) 1107
MaeIII GTNAC 2 cut(s) 328, 580
MalI GATC 7 cut(s) 234, 245, 322, 437, 899, 968, 1152
MboI GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
MflI RGATCY 1 cut(s) 435
MhlI GDGCHC 2 cut(s) 291, 782
MluCI AATT 3 cut(s) 219, 585, 929
MlyI GAGTC 4 cut(s) 128, 360, 369, 806
MmeI TCCRAC 4 cut(s) 337, 343, 640, 1074
MroNI GCCGGC 1 cut(s) 1136
MseI TTAA 1 cut(s) 629
MslI CAYNNNNRTG 4 cut(s) 671, 756, 794, 842
MspI CCGG 5 cut(s) 533, 548, 576, 972, 1137
MspR9I CCNGG 2 cut(s) 577, 973
MwoI GCNNNNNNNGC 3 cut(s) 390, 399, 503
NaeI GCCGGC 1 cut(s) 1138
NciI CCSGG 2 cut(s) 577, 973
NcoI CCATGG 1 cut(s) 276
NdeII GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
NgoMIV GCCGGC 1 cut(s) 1136
NlaIII CATG 5 cut(s) 280, 402, 670, 952, 994
NlaIV GGNNCC 3 cut(s) 531, 546, 561
NmuCI GTSAC 2 cut(s) 328, 580
NspV TTCGAA 1 cut(s) 1086
PaeR7I CTCGAG 2 cut(s) 64, 1013
PaqCI CACCTGC 1 cut(s) 544
PceI AGGCCT 1 cut(s) 743
PciSI GCTCTTC 1 cut(s) 724
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PdiI GCCGGC 1 cut(s) 1138
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 4 cut(s) 127, 383, 395, 1142
PleI GAGTC 4 cut(s) 128, 360, 368, 806
PpsI GAGTC 4 cut(s) 128, 360, 368, 806
Psp124BI GAGCTC 1 cut(s) 782
PspFI CCCAGC 1 cut(s) 284
PspN4I GGNNCC 3 cut(s) 531, 546, 561
PspPI GGNCC 2 cut(s) 182, 559
PspXI VCTCGAGB 2 cut(s) 64, 1013
PstI CTGCAG 2 cut(s) 386, 395
PstNI CAGNNNCTG 1 cut(s) 390
PsuI RGATCY 1 cut(s) 435
RsaI GTAC 3 cut(s) 531, 770, 1115
RsaNI GTAC 3 cut(s) 530, 769, 1114
RseI CAYNNNNRTG 4 cut(s) 671, 756, 794, 842
SacI GAGCTC 1 cut(s) 782
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 4 cut(s) 126, 382, 394, 1141
Sau3AI GATC 7 cut(s) 232, 243, 320, 435, 897, 966, 1150
Sau96I GGNCC 2 cut(s) 182, 559
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 4 cut(s) 128, 360, 369, 806
ScrFI CCNGG 2 cut(s) 577, 973
SduI GDGCHC 2 cut(s) 291, 782
SfaNI GCATC 2 cut(s) 775, 999
SfcI CTRYAG 2 cut(s) 382, 391
Sfr274I CTCGAG 2 cut(s) 64, 1013
SfuI TTCGAA 1 cut(s) 1086
SinI GGWCC 1 cut(s) 182
SlaI CTCGAG 2 cut(s) 64, 1013
SmiMI CAYNNNNRTG 4 cut(s) 671, 756, 794, 842
SmlI CTYRAG 3 cut(s) 64, 857, 1013
SmoI CTYRAG 3 cut(s) 64, 857, 1013
Sse9I AATT 3 cut(s) 219, 585, 929
SseBI AGGCCT 1 cut(s) 743
SsiI CCGC 1 cut(s) 563
SstI GAGCTC 1 cut(s) 782
StuI AGGCCT 1 cut(s) 743
StyD4I CCNGG 2 cut(s) 575, 971
StyI CCWWGG 4 cut(s) 276, 478, 498, 744
TaaI ACNGT 3 cut(s) 115, 215, 709
TaiI ACGT 1 cut(s) 1110
TaqI TCGA 4 cut(s) 65, 1014, 1043, 1086
TasI AATT 3 cut(s) 219, 585, 929
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 4 cut(s) 14, 603, 822, 849
TseFI GTSAC 2 cut(s) 328, 580
TseI GCWGC 4 cut(s) 125, 381, 393, 1140
Tsp45I GTSAC 2 cut(s) 328, 580
TspDTI ATGAA 2 cut(s) 267, 1007
TspRI CASTG 4 cut(s) 14, 603, 822, 849
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 219
XhoI CTCGAG 2 cut(s) 64, 1013
ZrmI AGTACT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.