Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

4230656 .. 4231674

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05133.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACCAGTGTTGAAGAGGAGAGAACAACAACAGGATGGGCTGCAAGGGATTCATCTGGGATTCTCTCACCCTTCACCTACACTCTTAGAGACACAGGCCCAGAAGATGTTTACATCAAAGTCCTGTGCTGTGGAATTTGCCACACTGATATTCACCAGGCTAGAAATCAACTTGGCATGTCACACTATCCAATGGTTCCTGGGCATGAAATAGTTGGTGAGGTGGTGCAAGTGGGATCAGATGTGACCAAGCTCAAAGTAGCAGACGTAGTCGGAGTCGGGCTTGTCGTAGGTTGCTGCAGAAACTGCAATCCATGCAAAACAGACAACGAGCAATACTGCAACGACAAAATCTGGACATATAGCGATGTTTACTCCGACGGCAAGCCCACCCAAGGCGGCTTTGCTGCTGCCATCGTCGTAAATCACAAGTTTGCAGTGAAGATACCGGATGGCATGGCACCGCAGCAGGCAGCGCCACTACTTTGCGCAGCGGTGACAATTTACAGCCCTCTTCGGAAGTTTGGTCTTAATGCTAATGGACCAAGAGGAGGAATACTAGGACTTGGAGGTGTGGGACACATGGGAGTGAAGATAGCAAAGGCCATGGAACACCATGTTACTGTGATAAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

213

Amino Acids

22.59

Weight (kDa)

6.69

Isoelectric Point (pI)

24.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	3.2e-25	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	460
AciI	CCGC	3 cut(s)	399, 464, 494
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	395, 551
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	2 cut(s)	156, 199
AluBI	AGCT	2 cut(s)	253, 633
AluI	AGCT	2 cut(s)	253, 633
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	306
AoxI	GGCC	2 cut(s)	97, 603
ApeKI	GCWGC	7 cut(s)	41, 297, 407, 410, 466, 473, 491
ApoI	RAATTY	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	478, 491
AspS9I	GGNCC	2 cut(s)	98, 542
AsuHPI	GGTGA	5 cut(s)	60, 67, 146, 230, 508
AvaII	GGWCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	460
BbvI	GCAGC	7 cut(s)	28, 284, 394, 397, 478, 485, 503
BccI	CCATC	3 cut(s)	30, 422, 446
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	158, 201
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	162, 560
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BisI	GCNGC	8 cut(s)	42, 298, 400, 408, 411, 467, 474, 492
BlsI	GCNGC	8 cut(s)	43, 299, 401, 409, 412, 468, 475, 493
Bme1390I	CCNGG	2 cut(s)	158, 201
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	98, 542
BmiI	GGNNCC	2 cut(s)	198, 462
BmrFI	CCNGG	2 cut(s)	158, 201
BsaJI	CCNNGG	3 cut(s)	200, 394, 606
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 551
Bse1I	ACTGG	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	158, 201
BseDI	CCNNGG	3 cut(s)	200, 394, 606
BseGI	GGATG	2 cut(s)	41, 457
BseLI	CCNNNNNNNGG	2 cut(s)	395, 551
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	2 cut(s)	32, 564
BseXI	GCAGC	7 cut(s)	28, 284, 394, 397, 478, 485, 503
BshFI	GGCC	2 cut(s)	99, 605
BshNI	GGYRCC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	2 cut(s)	395, 551
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	99, 605
Bsp143I	GATC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	3 cut(s)	399, 464, 494
BspANI	GGCC	2 cut(s)	99, 605
BspLI	GGNNCC	2 cut(s)	198, 462
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	200, 394, 606
BssMI	GATC	1 cut(s)	236
BssT1I	CCWWGG	2 cut(s)	394, 606
Bst2UI	CCWGG	2 cut(s)	158, 201
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	2 cut(s)	9, 519
BstAPI	GCANNNNNTGC	2 cut(s)	306, 315
BstC8I	GCNNGC	2 cut(s)	386, 471
BstDEI	CTNAG	2 cut(s)	86, 636
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	41, 457
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 491
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
BstNI	CCWGG	2 cut(s)	158, 201
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	156, 199
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	7 cut(s)	28, 284, 394, 397, 478, 485, 503
BsuRI	GGCC	2 cut(s)	99, 605
BtgI	CCRYGG	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	41, 457
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	13, 144, 444
Cac8I	GCNNGC	2 cut(s)	386, 471
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	2 cut(s)	478, 491
Cfr13I	GGNCC	2 cut(s)	98, 542
CviAII	CATG	7 cut(s)	178, 206, 315, 457, 583, 607, 617
DdeI	CTNAG	2 cut(s)	86, 636
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	9, 519
EarI	CTCTTC	2 cut(s)	9, 519
Eco130I	CCWWGG	2 cut(s)	394, 606
Eco47I	GGWCC	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	156, 199
EcoT14I	CCWWGG	2 cut(s)	394, 606
ErhI	CCWWGG	2 cut(s)	394, 606
FaeI	CATG	7 cut(s)	181, 209, 318, 460, 586, 610, 620
FaiI	YATR	9 cut(s)	179, 207, 316, 361, 363, 458, 584, 608, 618
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	7 cut(s)	177, 205, 314, 456, 582, 606, 616
Fnu4HI	GCNGC	8 cut(s)	42, 298, 400, 408, 411, 467, 474, 492
FokI	GGATG	2 cut(s)	48, 464
Fsp4HI	GCNGC	8 cut(s)	42, 298, 400, 408, 411, 467, 474, 492
FspBI	CTAG	2 cut(s)	162, 560
FspI	TGCGCA	1 cut(s)	490
GlaI	GCGC	2 cut(s)	477, 490
GluI	GCNGC	8 cut(s)	42, 298, 400, 408, 411, 467, 474, 492
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	99, 605
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	478, 491
Hin1II	CATG	7 cut(s)	181, 209, 318, 460, 586, 610, 620
Hin6I	GCGC	2 cut(s)	476, 489
HinP1I	GCGC	2 cut(s)	476, 489
HinfI	GANTC	3 cut(s)	50, 61, 276
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	5 cut(s)	60, 67, 146, 230, 508
Hpy166II	GTNNAC	2 cut(s)	112, 373
Hpy188I	TCNGA	4 cut(s)	241, 275, 379, 519
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	112, 373
Hpy99I	CGWCG	2 cut(s)	383, 422
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	7 cut(s)	44, 229, 300, 309, 318, 342, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
HpyF3I	CTNAG	2 cut(s)	86, 636
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	7 cut(s)	181, 209, 318, 460, 586, 610, 620
HspAI	GCGC	2 cut(s)	476, 489
Kzo9I	GATC	1 cut(s)	236
Lsp1109I	GCAGC	7 cut(s)	28, 284, 394, 397, 478, 485, 503
MaeI	CTAG	2 cut(s)	162, 560
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	180, 244, 496, 619
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	5 cut(s)	26, 116, 454, 506, 604
MluCI	AATT	2 cut(s)	135, 501
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	2 cut(s)	253, 402
MnlI	CCTC	6 cut(s)	10, 214, 522, 542, 545, 563
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	158, 201
MvaI	CCWGG	2 cut(s)	158, 201
MwoI	GCNNNNNNNGC	3 cut(s)	306, 315, 475
NcoI	CCATGG	1 cut(s)	606
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	7 cut(s)	181, 209, 318, 460, 586, 610, 620
NlaIV	GGNNCC	2 cut(s)	198, 462
NmuCI	GTSAC	3 cut(s)	180, 244, 496
NsbI	TGCGCA	1 cut(s)	490
NspI	RCATGY	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	50, 61
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	8 cut(s)	43, 299, 401, 409, 412, 468, 475, 493
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	156, 199
PspGI	CCWGG	2 cut(s)	156, 199
PspN4I	GGNNCC	2 cut(s)	198, 462
PspPI	GGNCC	2 cut(s)	98, 542
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	306
PsyI	GACNNNGTC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	8 cut(s)	42, 298, 400, 408, 411, 467, 474, 492
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	2 cut(s)	98, 542
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	158, 201
SetI	ASST	7 cut(s)	80, 225, 255, 270, 295, 574, 635
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	587
Sse9I	AATT	2 cut(s)	135, 501
SsiI	CCGC	3 cut(s)	399, 464, 494
SspMI	CTAG	2 cut(s)	162, 560
StyD4I	CCNGG	2 cut(s)	156, 199
StyI	CCWWGG	2 cut(s)	394, 606
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	270
TasI	AATT	2 cut(s)	135, 501
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	50, 61
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	3 cut(s)	13, 151, 444
TseFI	GTSAC	3 cut(s)	180, 244, 496
TseI	GCWGC	7 cut(s)	41, 297, 407, 410, 466, 473, 491
Tsp45I	GTSAC	3 cut(s)	180, 244, 496
TspDTI	ATGAA	2 cut(s)	42, 222
TspRI	CASTG	3 cut(s)	13, 151, 444
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	2 cut(s)	162, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.