Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004000.1

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Forward (+)

40863 .. 42680

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004000.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atggaggaaagaaaggcatttggttgggctgccagagacacttctgggtttctctctcccttttcattcaatctcaggaaaatggggcctgaagatgtggtattgaaggttctgtactgtggcgtagaccacactgatcttcatcagatgaggaatgagattcacagtactaattatcctttggttccagggcatgaagtagtgggtgaagtggtggagttgggttcagaggtgaagaaatttagagttggggacatagtgggagttggatgcatagtggggtcttgtggagagtgcttgtattgccaatccaacatggagcagtactgccctaagacaatcttcactatgaatgacacctacaaagatggaagcctgactcgcggaggcttctcctctgccatggttgttcatcaaaggtttgtggttcggataccagaaaagctagcaccggagcaggcggctccattgctgtgtgctggagttacagcttacagtccgctgaagcaattcatggggtttgtggttcggataccagaaaagctagcaccggagcaggccgctccattgctgtgtgctggagttacagcttacagtccgctgaagcaattcatggggtctgacagggttgtaaggggaggcatattgggtttaggaggagttggacacttgggtgtcataattgcaaaggcaatgggtcaccatgtgaccgtgataagctcttctaataagaagagggaagaggctttggagattttaggtgccgatgcttttatagttggctccaatgaggctgagatggagggagctgccagcagccttgactatatcctcgacactgtaccagctttgcaccctctgcactcttacctttcactcctcaaggttgacggtaagctcataatagttgctgctgttcctcaaccgcttcagtttgatgcagttgacataattctagggaagaggagcatttccgggagcttcatcggaagcatggaagaaacgcaggaaatactggagttctgggccgataaggatttgacgactatgatagagatagtaaaactggattatgctaacatggcatttgagagaatggaaaaaaatgatgtgaggtttaggtttgtcctggatgtagccggaagcaacctggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

385

Amino Acids

42.02

Weight (kDa)

5.46

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	761
AccBSI	CCGCTC	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	384
AciI	CCGC	6 cut(s)	384, 461, 500, 561, 599, 926
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	4 cut(s)	111, 524, 623, 914
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	4 cut(s)	116, 169, 326, 843
AgsI	TTSAA	2 cut(s)	70, 106
AjnI	CCWGG	3 cut(s)	187, 1128, 1149
AleI	CACNNNNGTG	1 cut(s)	672
AluBI	AGCT	9 cut(s)	445, 491, 544, 590, 720, 809, 848, 898, 981
AluI	AGCT	9 cut(s)	445, 491, 544, 590, 720, 809, 848, 898, 981
Alw26I	GTCTC	1 cut(s)	30
AoxI	GGCC	3 cut(s)	86, 558, 1026
ApeKI	GCWGC	4 cut(s)	29, 809, 816, 911
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	509, 608
AspS9I	GGNCC	2 cut(s)	86, 1026
AsuC2I	CCSGG	1 cut(s)	976
AsuHPI	GGTGA	3 cut(s)	218, 244, 692
AsuNHI	GCTAGC	2 cut(s)	445, 544
BanI	GGYRCC	1 cut(s)	761
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BbvI	GCAGC	4 cut(s)	16, 796, 828, 898
BccI	CCATC	2 cut(s)	362, 793
BciT130I	CCWGG	3 cut(s)	189, 1130, 1151
BciVI	GTATCC	2 cut(s)	426, 525
BcnI	CCSGG	1 cut(s)	976
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	3 cut(s)	446, 545, 956
BfuI	GTATCC	2 cut(s)	426, 525
BisI	GCNGC	6 cut(s)	30, 462, 561, 810, 817, 912
BlsI	GCNGC	6 cut(s)	31, 463, 562, 811, 818, 913
BmcAI	AGTACT	2 cut(s)	169, 326
Bme1390I	CCNGG	4 cut(s)	189, 976, 1130, 1151
BmgT120I	GGNCC	2 cut(s)	86, 1026
BmiI	GGNNCC	5 cut(s)	87, 186, 465, 763, 784
BmrFI	CCNGG	4 cut(s)	189, 976, 1130, 1151
BmsI	GCATC	3 cut(s)	260, 757, 928
BmtI	GCTAGC	2 cut(s)	449, 548
BpmI	CTGGAG	3 cut(s)	501, 600, 1037
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	976
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	188, 402
BsaWI	WCCGGW	2 cut(s)	451, 550
Bse1I	ACTGG	2 cut(s)	1020, 1071
Bse3DI	GCAATG	3 cut(s)	467, 566, 699
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	189, 1130, 1151
BseDI	CCNNGG	2 cut(s)	188, 402
BseGI	GGATG	2 cut(s)	275, 1138
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	3 cut(s)	467, 566, 699
BseMII	CTCAG	2 cut(s)	88, 786
BseNI	ACTGG	2 cut(s)	1020, 1071
BseRI	GAGGAG	4 cut(s)	385, 672, 869, 979
BseXI	GCAGC	4 cut(s)	16, 796, 828, 898
BsgI	GTGCAG	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	3 cut(s)	88, 560, 1028
BshNI	GGYRCC	1 cut(s)	761
BsiSI	CCGG	4 cut(s)	452, 551, 975, 1140
BslFI	GGGAC	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	88, 560, 1028
Bsp143I	GATC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	6 cut(s)	384, 461, 500, 561, 599, 926
BspANI	GGCC	3 cut(s)	88, 560, 1028
BspCNI	CTCAG	2 cut(s)	87, 787
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	5 cut(s)	87, 186, 465, 763, 784
BspOI	GCTAGC	2 cut(s)	449, 548
BspQI	GCTCTTC	1 cut(s)	727
BspT107I	GGYRCC	1 cut(s)	761
BsrBI	CCGCTC	1 cut(s)	563
BsrDI	GCAATG	3 cut(s)	467, 566, 699
BsrI	ACTGG	2 cut(s)	1020, 1071
BssECI	CCNNGG	2 cut(s)	188, 402
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	189, 1130, 1151
Bst4CI	ACNGT	7 cut(s)	119, 167, 497, 596, 712, 841, 893
Bst6I	CTCTTC	4 cut(s)	727, 728, 735, 956
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstC8I	GCNNGC	5 cut(s)	447, 459, 546, 558, 814
BstDEI	CTNAG	3 cut(s)	74, 333, 795
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	2 cut(s)	275, 1138
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 381, 859, 1082
BstNI	CCWGG	3 cut(s)	189, 1130, 1151
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	4 cut(s)	187, 974, 1128, 1149
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	4 cut(s)	16, 796, 828, 898
BsuI	GTATCC	2 cut(s)	426, 525
BsuRI	GGCC	3 cut(s)	88, 560, 1028
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	275, 1138
BtsIMutI	CAGTG	2 cut(s)	132, 837
Cac8I	GCNNGC	5 cut(s)	447, 459, 546, 558, 814
Cfr13I	GGNCC	2 cut(s)	86, 1026
Csp6I	GTAC	4 cut(s)	115, 168, 325, 842
CviAII	CATG	8 cut(s)	194, 316, 403, 514, 613, 704, 994, 1081
CviQI	GTAC	4 cut(s)	115, 168, 325, 842
DdeI	CTNAG	3 cut(s)	74, 333, 795
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraIII	CACNNNGTG	1 cut(s)	706
Eam1104I	CTCTTC	4 cut(s)	727, 728, 735, 956
EarI	CTCTTC	4 cut(s)	727, 728, 735, 956
Eco130I	CCWWGG	1 cut(s)	402
Eco57I	CTGAAG	4 cut(s)	111, 524, 623, 914
Eco91I	GGTNACC	1 cut(s)	698
EcoO109I	RGGNCCY	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	698
EcoRII	CCWGG	3 cut(s)	187, 1128, 1149
EcoT14I	CCWWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	8 cut(s)	197, 319, 406, 517, 616, 707, 997, 1084
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	8 cut(s)	193, 315, 402, 513, 612, 703, 993, 1080
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	30, 462, 561, 810, 817, 912
FokI	GGATG	2 cut(s)	282, 1145
Fsp4HI	GCNGC	6 cut(s)	30, 462, 561, 810, 817, 912
FspBI	CTAG	3 cut(s)	446, 545, 956
GluI	GCNGC	6 cut(s)	30, 462, 561, 810, 817, 912
GsuI	CTGGAG	3 cut(s)	501, 600, 1037
HaeIII	GGCC	3 cut(s)	88, 560, 1028
HapII	CCGG	4 cut(s)	452, 551, 975, 1140
Hin1II	CATG	8 cut(s)	197, 319, 406, 517, 616, 707, 997, 1084
HincII	GTYRAC	2 cut(s)	889, 946
HindII	GTYRAC	2 cut(s)	889, 946
HinfI	GANTC	2 cut(s)	160, 379
HpaII	CCGG	4 cut(s)	452, 551, 975, 1140
HphI	GGTGA	3 cut(s)	218, 244, 692
Hpy166II	GTNNAC	3 cut(s)	127, 889, 946
Hpy188I	TCNGA	6 cut(s)	147, 229, 432, 531, 622, 989
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	3 cut(s)	127, 889, 946
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	7 cut(s)	119, 167, 497, 596, 712, 841, 893
HpyCH4V	TGCA	5 cut(s)	273, 686, 853, 862, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 381, 859, 1082
HpyF3I	CTNAG	3 cut(s)	74, 333, 795
Hsp92II	CATG	8 cut(s)	197, 319, 406, 517, 616, 707, 997, 1084
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	727
LmnI	GCTCC	9 cut(s)	319, 454, 469, 553, 568, 788, 806, 966, 978
Lsp1109I	GCAGC	4 cut(s)	16, 796, 828, 898
LweI	GCATC	3 cut(s)	260, 757, 928
MaeI	CTAG	3 cut(s)	446, 545, 956
MaeIII	GTNAC	4 cut(s)	484, 583, 698, 706
MalI	GATC	1 cut(s)	138
MbiI	CCGCTC	1 cut(s)	563
MboI	GATC	1 cut(s)	136
MboII	GAAGA	9 cut(s)	104, 131, 247, 334, 714, 745, 752, 973, 1010
MluCI	AATT	6 cut(s)	172, 239, 509, 608, 681, 951
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	3 cut(s)	247, 336, 643
Mph1103I	ATGCAT	1 cut(s)	275
MroXI	GAANNNNTTC	2 cut(s)	509, 608
MslI	CAYNNNNRTG	3 cut(s)	472, 571, 672
MspA1I	CMGCKG	2 cut(s)	502, 601
MspI	CCGG	4 cut(s)	452, 551, 975, 1140
MspR9I	CCNGG	4 cut(s)	189, 976, 1130, 1151
MvaI	CCWGG	3 cut(s)	189, 1130, 1151
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	303, 381, 859, 1082
NciI	CCSGG	1 cut(s)	976
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	1 cut(s)	136
NheI	GCTAGC	2 cut(s)	445, 544
NlaIII	CATG	8 cut(s)	197, 319, 406, 517, 616, 707, 997, 1084
NlaIV	GGNNCC	5 cut(s)	87, 186, 465, 763, 784
NmuCI	GTSAC	2 cut(s)	698, 706
NsiI	ATGCAT	1 cut(s)	275
OliI	CACNNNNGTG	1 cut(s)	672
PciSI	GCTCTTC	1 cut(s)	727
PdmI	GAANNNNTTC	2 cut(s)	509, 608
PfeI	GAWTC	1 cut(s)	160
PfoI	TCCNGGA	2 cut(s)	974, 1128
PkrI	GCNGC	6 cut(s)	31, 463, 562, 811, 818, 913
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	187, 1128, 1149
PspEI	GGTNACC	1 cut(s)	698
PspGI	CCWGG	3 cut(s)	187, 1128, 1149
PspN4I	GGNNCC	5 cut(s)	87, 186, 465, 763, 784
PspPI	GGNCC	2 cut(s)	86, 1026
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
RsaI	GTAC	4 cut(s)	116, 169, 326, 843
RsaNI	GTAC	4 cut(s)	115, 168, 325, 842
RseI	CAYNNNNRTG	3 cut(s)	472, 571, 672
SapI	GCTCTTC	1 cut(s)	727
SatI	GCNGC	6 cut(s)	30, 462, 561, 810, 817, 912
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	2 cut(s)	86, 1026
ScaI	AGTACT	2 cut(s)	169, 326
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	4 cut(s)	189, 976, 1130, 1151
SfaNI	GCATC	3 cut(s)	260, 757, 928
SmiMI	CAYNNNNRTG	3 cut(s)	472, 571, 672
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	6 cut(s)	172, 239, 509, 608, 681, 951
SsiI	CCGC	6 cut(s)	384, 461, 500, 561, 599, 926
SspMI	CTAG	3 cut(s)	446, 545, 956
StyD4I	CCNGG	4 cut(s)	187, 974, 1128, 1149
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	7 cut(s)	119, 167, 497, 596, 712, 841, 893
TaqI	TCGA	1 cut(s)	834
TasI	AATT	6 cut(s)	172, 239, 509, 608, 681, 951
TatI	WGTACW	3 cut(s)	114, 167, 324
TauI	GCSGC	2 cut(s)	464, 563
TfiI	GAWTC	1 cut(s)	160
TscAI	CASTG	2 cut(s)	139, 844
TseFI	GTSAC	2 cut(s)	698, 706
TseI	GCWGC	4 cut(s)	29, 809, 816, 911
Tsp45I	GTSAC	2 cut(s)	698, 706
TspDTI	ATGAA	8 cut(s)	54, 131, 210, 365, 401, 502, 601, 973
TspRI	CASTG	2 cut(s)	139, 844
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	2 cut(s)	509, 608
XspI	CTAG	3 cut(s)	446, 545, 956
ZrmI	AGTACT	2 cut(s)	169, 326
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.