Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

16386631 .. 16388940

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGAATAATGGAGGCAGAGAGGAAAACAACAGGCTGGGCTGCCAGAGACCCATCTGGGATCCTCTCTCCTTACACTTACACTCTTAGAGAGACTGGACCAGAGGATGTGAACATAAGAATCATTTGCTGTGGAATCTGCCACACCGATCTTCATCAAACTAAAAATGATCTTGGCATGTCTAATTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGGAAGTAGTGGAGGTGGGATCAGATGTGAGCAAGTTCACCGTAGGGGACATAGTTGGAGTTGGTTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCCTGCGAGAGAGATCTGGAACAGTATTGTCCAAAGAAGATTTGGAGCTACAATGATGTTTACATCAATGGTCAACCTACACAAGGCGGCTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTCAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACTGTGTACAGTCCACTGAGCCACTTTGGTCTGAAACAACCAGGCCTAAGAGGAGGTATACTAGGGTTAGGTGGAGTCGGTCACATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATAAGCTCATCAAACAAGAAGAGAGAAGAGGCATTGCAAGATCTTGGAGCTGATGATTACGTGATCGGATCCGACCAAGCGAAGATGAGCGAATTGGCTGATTCGTTGGATTACGTAATTGACACGGTGCCTGTTCATCATGCACTTGAGCCATATTTGTCTCTGCTTAAGCTTGATGGTAAACTCATTCTCATGGGAGTTATCAACAATCCATTACAGTTTCTCACTCCTCTGCTTATGCTTGGGAGGAAAGTGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGAGATGCTTGAGTTCTGTAAAGAAAAGGGTTTGAGTTCGATTATCGAAGTTGTGAAGATGGATTATGTTAACACTGCGTTTGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCAATCTCGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

357

Amino Acids

38.74

Weight (kDa)

5.42

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	6.8e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	191 - 314	2.3e-24	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	556
AciI	CCGC	4 cut(s)	300, 399, 461, 479
AclWI	GGATC	5 cut(s)	55, 68, 244, 690, 703
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	395
AflII	CTTAAG	1 cut(s)	794
AjnI	CCWGG	2 cut(s)	199, 538
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	5 cut(s)	360, 633, 677, 799, 894
AluI	AGCT	5 cut(s)	360, 633, 677, 799, 894
Alw26I	GTCTC	5 cut(s)	42, 86, 792, 908, 1000
AlwI	GGATC	5 cut(s)	55, 68, 244, 690, 703
Ama87I	CYCGRG	1 cut(s)	1010
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	41, 473
AspLEI	GCGC	2 cut(s)	478, 491
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	247, 416, 605
AvaI	CYCGRG	1 cut(s)	1010
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	2 cut(s)	60, 695
BanI	GGYRCC	1 cut(s)	754
BbvI	GCAGC	2 cut(s)	28, 460
BccI	CCATC	3 cut(s)	61, 797, 973
BciT130I	CCWGG	2 cut(s)	201, 540
BcoDI	GTCTC	5 cut(s)	42, 86, 792, 908, 1000
BfaI	CTAG	1 cut(s)	560
BfrI	CTTAAG	1 cut(s)	794
BglII	AGATCT	2 cut(s)	325, 667
BisI	GCNGC	4 cut(s)	42, 400, 474, 479
BlsI	GCNGC	4 cut(s)	43, 401, 475, 480
Bme1390I	CCNGG	2 cut(s)	201, 540
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	1010
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	4 cut(s)	62, 198, 697, 756
BmrFI	CCNGG	2 cut(s)	201, 540
BmsI	GCATC	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	794, 950
BsaAI	YACGTR	2 cut(s)	688, 742
BsaBI	GATNNNNATC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	192, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	2 cut(s)	612, 659
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	201, 540
BseDI	CCNNGG	2 cut(s)	192, 200
BseGI	GGATG	2 cut(s)	112, 299
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	2 cut(s)	612, 659
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	564, 846, 935
BseXI	GCAGC	2 cut(s)	28, 460
BseYI	CCCAGC	1 cut(s)	36
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	754
BsiHKCI	CYCGRG	1 cut(s)	1010
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	5 cut(s)	42, 86, 792, 908, 1000
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	543
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	1010
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	4 cut(s)	300, 399, 461, 479
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	4 cut(s)	62, 198, 697, 756
BspPI	GGATC	5 cut(s)	55, 68, 244, 690, 703
BspT107I	GGYRCC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	42
BsrDI	GCAATG	2 cut(s)	612, 659
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	192, 200
BssMI	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
BssNAI	GTATAC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	192
Bst1107I	GTATAC	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	201, 540
Bst4CI	ACNGT	9 cut(s)	259, 336, 418, 486, 502, 509, 625, 754, 846
Bst6I	CTCTTC	2 cut(s)	641, 648
BstAFI	CTTAAG	1 cut(s)	794
BstAUI	TGTACA	1 cut(s)	504
BstBAI	YACGTR	2 cut(s)	688, 742
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	3 cut(s)	86, 515, 545
BstDSI	CCRYGG	1 cut(s)	192
BstEII	GGTNACC	1 cut(s)	611
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	112, 299
BstHHI	GCGC	2 cut(s)	478, 491
BstKTI	GATC	8 cut(s)	63, 151, 172, 239, 328, 670, 693, 698
BstMAI	GTCTC	5 cut(s)	42, 86, 792, 908, 1000
BstMBI	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	2 cut(s)	201, 540
BstNSI	RCATGY	1 cut(s)	181
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	199, 538
BstSNI	TACGTA	1 cut(s)	742
BstV1I	GCAGC	2 cut(s)	28, 460
BstX2I	RGATCY	4 cut(s)	60, 325, 667, 695
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	4 cut(s)	60, 325, 667, 695
BstZ17I	GTATAC	1 cut(s)	557
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	112, 299
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	2 cut(s)	512, 993
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	2 cut(s)	478, 491
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	8 cut(s)	178, 193, 206, 583, 617, 767, 820, 907
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	3 cut(s)	86, 515, 545
DpnI	GATC	8 cut(s)	62, 150, 171, 238, 327, 669, 692, 697
DpnII	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
DraIII	CACNNNGTG	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	641, 648
EarI	CTCTTC	2 cut(s)	641, 648
Eco105I	TACGTA	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	1010
Eco91I	GGTNACC	1 cut(s)	611
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	199, 538
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	8 cut(s)	181, 196, 209, 586, 620, 770, 823, 910
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	8 cut(s)	177, 192, 205, 582, 616, 766, 819, 906
FblI	GTMKAC	1 cut(s)	556
Fnu4HI	GCNGC	4 cut(s)	42, 400, 474, 479
FokI	GGATG	2 cut(s)	119, 306
Fsp4HI	GCNGC	4 cut(s)	42, 400, 474, 479
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	2 cut(s)	477, 490
GluI	GCNGC	4 cut(s)	42, 400, 474, 479
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	543
HhaI	GCGC	2 cut(s)	478, 491
Hin1II	CATG	8 cut(s)	181, 196, 209, 586, 620, 770, 823, 910
Hin6I	GCGC	2 cut(s)	476, 489
HinP1I	GCGC	2 cut(s)	476, 489
HincII	GTYRAC	2 cut(s)	386, 991
HindII	GTYRAC	2 cut(s)	386, 991
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	6 cut(s)	120, 135, 445, 573, 728, 1008
HpaI	GTTAAC	1 cut(s)	991
HphI	GGTGA	3 cut(s)	247, 416, 605
Hpy188I	TCNGA	4 cut(s)	241, 531, 695, 700
Hpy188III	TCNNGA	5 cut(s)	329, 442, 449, 1012, 1064
Hpy99I	CGWCG	3 cut(s)	422, 1043, 1070
HpyAV	CCTTC	3 cut(s)	446, 904, 1046
HpyCH4III	ACNGT	9 cut(s)	259, 336, 418, 486, 502, 509, 625, 754, 846
HpyCH4IV	ACGT	2 cut(s)	687, 741
HpyCH4V	TGCA	2 cut(s)	664, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	3 cut(s)	86, 515, 545
HpySE526I	ACGT	2 cut(s)	687, 741
Hsp92II	CATG	8 cut(s)	181, 196, 209, 586, 620, 770, 823, 910
HspAI	GCGC	2 cut(s)	476, 489
KspAI	GTTAAC	1 cut(s)	991
Kzo9I	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
LmnI	GCTCC	4 cut(s)	357, 674, 891, 903
Lsp1109I	GCAGC	2 cut(s)	28, 460
LweI	GCATC	1 cut(s)	915
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	687, 741
MaeIII	GTNAC	4 cut(s)	496, 578, 611, 619
MalI	GATC	8 cut(s)	62, 150, 171, 238, 327, 669, 692, 697
MboI	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
MboII	GAAGA	7 cut(s)	143, 361, 658, 665, 721, 988, 1027
MflI	RGATCY	4 cut(s)	60, 325, 667, 695
MluCI	AATT	3 cut(s)	184, 719, 744
MlyI	GAGTC	2 cut(s)	582, 1002
MmeI	TCCRAC	4 cut(s)	253, 271, 714, 723
MseI	TTAA	2 cut(s)	795, 990
MslI	CAYNNNNRTG	3 cut(s)	585, 587, 818
MspCI	CTTAAG	1 cut(s)	794
MspR9I	CCNGG	2 cut(s)	201, 540
MvaI	CCWGG	2 cut(s)	201, 540
MwoI	GCNNNNNNNGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
NlaIII	CATG	8 cut(s)	181, 196, 209, 586, 620, 770, 823, 910
NlaIV	GGNNCC	4 cut(s)	62, 198, 697, 756
NmuCI	GTSAC	4 cut(s)	496, 578, 611, 619
NspI	RCATGY	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	585
PaeR7I	CTCGAG	1 cut(s)	1010
PceI	AGGCCT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	2 cut(s)	1017, 1047
PfeI	GAWTC	4 cut(s)	120, 135, 445, 728
PkrI	GCNGC	4 cut(s)	43, 401, 475, 480
PleI	GAGTC	2 cut(s)	581, 1002
PpsI	GAGTC	2 cut(s)	581, 1002
Ppu21I	YACGTR	2 cut(s)	688, 742
Psp6I	CCWGG	2 cut(s)	199, 538
PspEI	GGTNACC	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	2 cut(s)	199, 538
PspN4I	GGNNCC	4 cut(s)	62, 198, 697, 756
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	4 cut(s)	60, 325, 667, 695
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	3 cut(s)	585, 587, 818
SaqAI	TTAA	2 cut(s)	795, 990
SatI	GCNGC	4 cut(s)	42, 400, 474, 479
Sau3AI	GATC	8 cut(s)	60, 148, 169, 236, 325, 667, 690, 695
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	582, 1002
ScrFI	CCNGG	2 cut(s)	201, 540
SfaNI	GCATC	1 cut(s)	915
Sfr274I	CTCGAG	1 cut(s)	1010
SinI	GGWCC	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	1010
SmiMI	CAYNNNNRTG	3 cut(s)	585, 587, 818
SmlI	CTYRAG	4 cut(s)	773, 794, 929, 1010
SmoI	CTYRAG	4 cut(s)	773, 794, 929, 1010
SnaBI	TACGTA	1 cut(s)	742
Sse9I	AATT	3 cut(s)	184, 719, 744
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	4 cut(s)	300, 399, 461, 479
SspMI	CTAG	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	199, 538
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	9 cut(s)	259, 336, 418, 486, 502, 509, 625, 754, 846
TaiI	ACGT	2 cut(s)	690, 744
TaqI	TCGA	5 cut(s)	959, 966, 1011, 1050, 1065
TaqII	GACCGA	1 cut(s)	566
TasI	AATT	3 cut(s)	184, 719, 744
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	2 cut(s)	402, 481
TfiI	GAWTC	4 cut(s)	120, 135, 445, 728
Tru1I	TTAA	2 cut(s)	795, 990
Tru9I	TTAA	2 cut(s)	795, 990
TscAI	CASTG	2 cut(s)	519, 1000
TseFI	GTSAC	4 cut(s)	496, 578, 611, 619
TseI	GCWGC	2 cut(s)	41, 473
Tsp45I	GTSAC	4 cut(s)	496, 578, 611, 619
TspDTI	ATGAA	5 cut(s)	143, 222, 752, 886, 923
TspRI	CASTG	2 cut(s)	519, 1000
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	393
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	1010
XmiI	GTMKAC	1 cut(s)	556
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.