Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001379

Physical Location & Seq

Genomic Coordinates Reverse (-)

15467853 .. 15470440

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1097100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGCAACCTAGAAGTGGAGAGAACAACAACAGCATGGGCTGCAAGAGACGCATCTGGCATTCTCTCACCCTACACCTGCACTCTTAGAAACACAGGCCCAGAAGATGTTTACATCAAAGTCCTATTCTGTGGAGTTTGCCACACCGATACGCACCTGGCAAAAAATCAACTTGGCATGTCACACTATCCCCTGGTTCCTGGGCATGAAGTGGTTGGTAAGGTGGTCGAGGCTGGATCAGATGTGACCAAGTTCAGAGTAGGAGATGTGGTAGGAGTTGGCCTCGTTGTTGGTTGCTGCAGAAACTGCAACCCTTGCAACACAGATAATGAGCAATACTGCAACAAGAAAATCTGGACGTACGCTGACGTTTGCACCTATGGCAAACCCACCAAAGGCGGCTTTTCCGGTGCAATGGTGGTTGACCAAAAGTTTGCGGTGAAGATACCCGAGGGCATGGTGCCAGAACAGGCGGCGCCAATGCTTTGCGCGGGGGTGACGGTGTACAGCCCGCTGGGGCACTTGGGCCTGAATGTGGGTGGGATTAAAAGGAGGAATGCTGGGGACTGGCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045551 GO:0050896 GO:0055114 GO:0071704 GO:0080167 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

193

Amino Acids

20.58

Weight (kDa)

7.52

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 151	1.4e-25	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19450 AT4G34230 AT4G34230
fragaria_vesca	FvH4_1g16790 FvH4_1g16790 FvH4_2g05132 FvH4_2g05132 FvH4_2g05132 FvH4_2g05133 FvH4_2g05134
malus_domestica	MD05G1089800.v1.1 MD05G1089900.v1.1 MD10G1097100.v1.1 MD10G1097200.v1.1 MD10G1097500.v1.1
prunus_persica	Prupe.6G228800_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135100_v2.0.a1 Prupe.8G135300_v2.0.a1 Prupe.8G135300_v2.0.a1
pyrus_communis	pycom05g08890 pycom10g08310 pycom10g08320
rosa_chinensis	RchiOBHm_Chr2g0106691 RchiOBHm_Chr6g0255061 RchiOBHm_Chr6g0255071
rosa_laevigata	RLG00000014854 RLG00000014856 RLG00000017531
rosa_multiflora	Rmu_co8122326.1_g000001 Rmu_co8379393.1_g000001 Rmu_sc0003745.1_g000001 Rmu_sc0004000.1_g000006 Rmu_sc0004590.1_g000001 Rmu_ssc0000011.1_g000071
rosa_roxburghii	Rroxscaffold_2G00136880 Rroxscaffold_7G00210210 Rroxscaffold_7G00210220
rosa_rugosa	Rorug02G0137800 Rorug05G0556500 Rorug05G0556900 Rorug05G0557000
rosa_samantha	Rh2BG200000 Rh2CG193900 Rh2DG195100 Rh6AG073900 Rh6BG066400 Rh6BG066500 Rh6DG063100 Rh6DG063200
rosa_wichuraiana	Rw2G014850 Rw6G006420 Rw6G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	86, 562
Acc36I	ACCTGC	2 cut(s)	86, 562
AccB1I	GGYRCC	2 cut(s)	460, 475
AccII	CGCG	1 cut(s)	491
AciI	CCGC	5 cut(s)	399, 437, 473, 491, 512
AclWI	GGATC	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	362, 506
AfiI	CCNNNNNNNGG	3 cut(s)	16, 395, 535
AjnI	CCWGG	3 cut(s)	156, 192, 199
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	244
AlwNI	CAGNNNCTG	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	3 cut(s)	97, 280, 526
ApeKI	GCWGC	2 cut(s)	41, 297
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AspLEI	GCGC	2 cut(s)	478, 491
AspS9I	GGNCC	2 cut(s)	98, 526
AsuHPI	GGTGA	3 cut(s)	60, 451, 508
AvaI	CYCGRG	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	2 cut(s)	460, 475
BbvI	GCAGC	2 cut(s)	28, 284
BciT130I	CCWGG	3 cut(s)	158, 194, 201
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	479
BfuAI	ACCTGC	2 cut(s)	86, 562
BisI	GCNGC	4 cut(s)	42, 298, 400, 474
BlsI	GCNGC	4 cut(s)	43, 299, 401, 475
Bme1390I	CCNGG	3 cut(s)	158, 194, 201
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	2 cut(s)	98, 526
BmiI	GGNNCC	3 cut(s)	198, 462, 477
BmrFI	CCNGG	3 cut(s)	158, 194, 201
BmsI	GCATC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	192, 200, 450
BsaWI	WCCGGW	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 395, 535
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	158, 194, 201
BseDI	CCNNGG	3 cut(s)	192, 200, 450
BseLI	CCNNNNNNNGG	3 cut(s)	16, 395, 535
BseMI	GCAATG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	28, 284
BseYI	CCCAGC	2 cut(s)	514, 560
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	491
BshFI	GGCC	3 cut(s)	99, 282, 528
BshNI	GGYRCC	2 cut(s)	460, 475
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	408
BsiWI	CGTACG	1 cut(s)	360
BslI	CCNNNNNNNGG	3 cut(s)	16, 395, 535
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmI	GAATGC	2 cut(s)	60, 562
BsnI	GGCC	3 cut(s)	99, 282, 528
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	236
BspACI	CCGC	5 cut(s)	399, 437, 473, 491, 512
BspANI	GGCC	3 cut(s)	99, 282, 528
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	198, 462, 477
BspMAI	CTGCAG	1 cut(s)	302
BspMI	ACCTGC	2 cut(s)	86, 562
BspPI	GGATC	1 cut(s)	244
BspT107I	GGYRCC	2 cut(s)	460, 475
BsrDI	GCAATG	1 cut(s)	420
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	3 cut(s)	192, 200, 450
BssMI	GATC	1 cut(s)	236
BssNI	GRCGYC	1 cut(s)	476
Bst2UI	CCWGG	3 cut(s)	158, 194, 201
Bst4CI	ACNGT	1 cut(s)	502
BstACI	GRCGYC	1 cut(s)	476
BstAPI	GCANNNNNTGC	3 cut(s)	41, 306, 315
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 491
BstKTI	GATC	1 cut(s)	239
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 50, 306, 315, 381
BstNI	CCWGG	3 cut(s)	158, 194, 201
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	156, 192, 199
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	28, 284
BsuRI	GGCC	3 cut(s)	99, 282, 528
BveI	ACCTGC	2 cut(s)	86, 562
Cac8I	GCNNGC	1 cut(s)	512
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	2 cut(s)	478, 491
Cfr13I	GGNCC	2 cut(s)	98, 526
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	361, 505
CviAII	CATG	4 cut(s)	36, 178, 206, 457
CviJI	RGCY	7 cut(s)	41, 99, 233, 282, 402, 510, 528
CviKI_1	RGCY	7 cut(s)	41, 99, 233, 282, 402, 510, 528
CviQI	GTAC	2 cut(s)	361, 505
DdeI	CTNAG	1 cut(s)	86
DinI	GGCGCC	1 cut(s)	477
DpnI	GATC	1 cut(s)	238
DpnII	GATC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	156, 192, 199
EgeI	GGCGCC	1 cut(s)	477
EheI	GGCGCC	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	4 cut(s)	39, 181, 209, 460
FaiI	YATR	5 cut(s)	37, 179, 207, 381, 458
FatI	CATG	4 cut(s)	35, 177, 205, 456
FauI	CCCGC	2 cut(s)	484, 519
Fnu4HI	GCNGC	4 cut(s)	42, 298, 400, 474
Fsp4HI	GCNGC	4 cut(s)	42, 298, 400, 474
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	2 cut(s)	477, 490
GluI	GCNGC	4 cut(s)	42, 298, 400, 474
GsaI	CCCAGC	2 cut(s)	518, 564
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	99, 282, 528
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	478, 491
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	39, 181, 209, 460
Hin6I	GCGC	2 cut(s)	476, 489
HinP1I	GCGC	2 cut(s)	476, 489
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	3 cut(s)	60, 451, 508
Hpy166II	GTNNAC	3 cut(s)	112, 424, 505
Hpy188I	TCNGA	2 cut(s)	241, 257
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	3 cut(s)	112, 424, 505
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	359, 369
HpyCH4V	TGCA	8 cut(s)	44, 81, 300, 309, 318, 342, 375, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 50, 306, 315, 381
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	2 cut(s)	359, 369
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	4 cut(s)	39, 181, 209, 460
HspAI	GCGC	2 cut(s)	476, 489
KasI	GGCGCC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	28, 284
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	359, 369
MaeIII	GTNAC	3 cut(s)	180, 244, 496
MalI	GATC	1 cut(s)	238
MboI	GATC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	116, 454
MhlI	GDGCHC	1 cut(s)	522
Mly113I	GGCGCC	1 cut(s)	476
MnlI	CCTC	4 cut(s)	223, 293, 445, 546
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	514
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	3 cut(s)	158, 194, 201
Mva1269I	GAATGC	2 cut(s)	60, 562
MvaI	CCWGG	3 cut(s)	158, 194, 201
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	41, 50, 306, 315, 381
NarI	GGCGCC	1 cut(s)	476
NdeII	GATC	1 cut(s)	236
NlaIII	CATG	4 cut(s)	39, 181, 209, 460
NlaIV	GGNNCC	3 cut(s)	198, 462, 477
NmuCI	GTSAC	3 cut(s)	180, 244, 496
NspI	RCATGY	1 cut(s)	181
PaqCI	CACCTGC	2 cut(s)	86, 562
PctI	GAATGC	2 cut(s)	60, 562
Pfl23II	CGTACG	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	43, 299, 401, 475
PluTI	GGCGCC	1 cut(s)	479
Psp6I	CCWGG	3 cut(s)	156, 192, 199
PspFI	CCCAGC	2 cut(s)	514, 560
PspGI	CCWGG	3 cut(s)	156, 192, 199
PspLI	CGTACG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	198, 462, 477
PspPI	GGNCC	2 cut(s)	98, 526
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	306
RsaI	GTAC	2 cut(s)	362, 506
RsaNI	GTAC	2 cut(s)	361, 505
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	4 cut(s)	42, 298, 400, 474
Sau3AI	GATC	1 cut(s)	236
Sau96I	GGNCC	2 cut(s)	98, 526
ScrFI	CCNGG	3 cut(s)	158, 194, 201
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	8 cut(s)	12, 80, 159, 225, 362, 372, 380, 576
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	298
SfoI	GGCGCC	1 cut(s)	477
SsiI	CCGC	5 cut(s)	399, 437, 473, 491, 512
SspDI	GGCGCC	1 cut(s)	475
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	156, 192, 199
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	362, 372
TaqI	TCGA	1 cut(s)	228
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	2 cut(s)	402, 476
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseFI	GTSAC	3 cut(s)	180, 244, 496
TseI	GCWGC	2 cut(s)	41, 297
Tsp45I	GTSAC	3 cut(s)	180, 244, 496
TspDTI	ATGAA	1 cut(s)	222
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.