Rh2DG195100

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001379
Physical Location & Seq
Forward (+)
17898043 .. 17900942
2900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG195100.1

Sequence Viewer

Length: 660 bp
ATGTTTAGTTTCAGTGGCGAGTTTGTGGTTCGGATACCAGAAAAGCTAGCACCGGAGCAGGCGGCTCCATTGCTGTGTGCTGGAGTTACAGCTTACAGTCCGCTGAAGCAATTCATGGGGTCTGACAGGGTTGTAAGGGGAGGCATATTGGGTTTAGGAGGAGTTGGACACTTGGGTGTCATAATTGCAAAGGCAATGGGTCACCATGTGACTGTGATAAGCTCTTCTAATAAGAAGAGGGAAGAGGCTTTGGAGATTTTAGGTGCAGATGCTTTTATAGTTGGCTCCAATGAGGCTGAGATGGAGGGAGCTGCCAGCAGCCTTGACTATATCCTCGACACTGTACCAGCTTTGCACCCTCTGCACTCTTACCTTTCACTCCTCAAGGTTGACGGTAAGCTCATAATAGTTGCTGCTGTTCCTCAACCGCTTCAGTTTGATGCAGTTGACATAATTCTAGGGAAGAGGAGCATTTCCGGGAGCTTCATCGGAAGCATGGAAGAAACGCAGGAAATACTGGAGTTCTGGGCAGACAAGGATTTGACGACTATGATAGAGATAGTAAAACTGGATTATGCTAACAAGGCATTTGAGAGAATGGAAAAAAATGATGTGAGGTTTAGGTTTGTCCTGGATGTAGCCGGAAGCAACCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

219

Amino Acids

23.72

Weight (kDa)

5.08

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 54 - 175 2e-22 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 87 - 206 2.1e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 62, 101, 428
AcuI CTGAAG 2 cut(s) 125, 416
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 345
AjnI CCWGG 2 cut(s) 630, 651
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 7 cut(s) 46, 92, 222, 311, 350, 400, 483
AluI AGCT 7 cut(s) 46, 92, 222, 311, 350, 400, 483
ApeKI GCWGC 3 cut(s) 311, 318, 413
Asp700I GAANNNNTTC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 194
AsuNHI GCTAGC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 298, 330, 400
BccI CCATC 1 cut(s) 295
BciT130I CCWGG 2 cut(s) 632, 653
BciVI GTATCC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 478
BfaI CTAG 2 cut(s) 47, 458
BfuI GTATCC 1 cut(s) 27
BisI GCNGC 4 cut(s) 63, 312, 319, 414
BlsI GCNGC 4 cut(s) 64, 313, 320, 415
Bme1390I CCNGG 3 cut(s) 478, 632, 653
BmiI GGNNCC 2 cut(s) 66, 286
BmrFI CCNGG 3 cut(s) 478, 632, 653
BmsI GCATC 2 cut(s) 259, 430
BmtI GCTAGC 1 cut(s) 50
BpmI CTGGAG 2 cut(s) 102, 539
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 522, 573
Bse3DI GCAATG 2 cut(s) 68, 201
BseBI CCWGG 2 cut(s) 632, 653
BseGI GGATG 1 cut(s) 640
BseMI GCAATG 2 cut(s) 68, 201
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 522, 573
BseRI GAGGAG 3 cut(s) 174, 371, 481
BseXI GCAGC 3 cut(s) 298, 330, 400
BsgI GTGCAG 2 cut(s) 285, 347
BsiSI CCGG 3 cut(s) 53, 477, 642
BspACI CCGC 3 cut(s) 62, 101, 428
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 66, 286
BspOI GCTAGC 1 cut(s) 50
BspQI GCTCTTC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 68, 201
BsrI ACTGG 2 cut(s) 522, 573
Bst2UI CCWGG 2 cut(s) 632, 653
Bst4CI ACNGT 4 cut(s) 98, 214, 343, 395
Bst6I CTCTTC 4 cut(s) 229, 230, 237, 458
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 48, 60, 316
BstDEI CTNAG 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 640
BstMWI GCNNNNNNNGC 2 cut(s) 361, 584
BstNI CCWGG 2 cut(s) 632, 653
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 3 cut(s) 476, 630, 651
BstV1I GCAGC 3 cut(s) 298, 330, 400
BsuI GTATCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 640
BtsIMutI CAGTG 2 cut(s) 19, 339
Cac8I GCNNGC 3 cut(s) 48, 60, 316
Csp6I GTAC 1 cut(s) 344
CviAII CATG 3 cut(s) 115, 206, 496
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 1 cut(s) 297
DraIII CACNNNGTG 1 cut(s) 208
Eam1104I CTCTTC 4 cut(s) 229, 230, 237, 458
EarI CTCTTC 4 cut(s) 229, 230, 237, 458
Eco57I CTGAAG 2 cut(s) 125, 416
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 630, 651
FaeI CATG 3 cut(s) 118, 209, 499
FatI CATG 3 cut(s) 114, 205, 495
Fnu4HI GCNGC 4 cut(s) 63, 312, 319, 414
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 4 cut(s) 63, 312, 319, 414
FspBI CTAG 2 cut(s) 47, 458
GluI GCNGC 4 cut(s) 63, 312, 319, 414
GsuI CTGGAG 2 cut(s) 102, 539
HapII CCGG 3 cut(s) 53, 477, 642
Hin1II CATG 3 cut(s) 118, 209, 499
HincII GTYRAC 2 cut(s) 391, 448
HindII GTYRAC 2 cut(s) 391, 448
HpaII CCGG 3 cut(s) 53, 477, 642
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 391, 448
Hpy188I TCNGA 3 cut(s) 33, 124, 491
Hpy8I GTNNAC 2 cut(s) 391, 448
HpyCH4III ACNGT 4 cut(s) 98, 214, 343, 395
HpyCH4V TGCA 5 cut(s) 188, 266, 355, 364, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 584
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 118, 209, 499
LguI GCTCTTC 1 cut(s) 229
LmnI GCTCC 6 cut(s) 55, 70, 290, 308, 468, 480
Lsp1109I GCAGC 3 cut(s) 298, 330, 400
LweI GCATC 2 cut(s) 259, 430
MaeI CTAG 2 cut(s) 47, 458
MaeIII GTNAC 3 cut(s) 85, 200, 208
MboII GAAGA 5 cut(s) 216, 247, 254, 475, 512
MluCI AATT 3 cut(s) 110, 183, 453
MmeI TCCRAC 1 cut(s) 145
MroXI GAANNNNTTC 1 cut(s) 110
MslI CAYNNNNRTG 2 cut(s) 73, 174
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 3 cut(s) 53, 477, 642
MspR9I CCNGG 3 cut(s) 478, 632, 653
MvaI CCWGG 2 cut(s) 632, 653
MwoI GCNNNNNNNGC 2 cut(s) 361, 584
NciI CCSGG 1 cut(s) 478
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 3 cut(s) 118, 209, 499
NlaIV GGNNCC 2 cut(s) 66, 286
NmuCI GTSAC 2 cut(s) 200, 208
OliI CACNNNNGTG 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 110
PfoI TCCNGGA 2 cut(s) 476, 630
PkrI GCNGC 4 cut(s) 64, 313, 320, 415
Psp6I CCWGG 2 cut(s) 630, 651
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 2 cut(s) 630, 651
PspN4I GGNNCC 2 cut(s) 66, 286
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 73, 174
SapI GCTCTTC 1 cut(s) 229
SatI GCNGC 4 cut(s) 63, 312, 319, 414
ScrFI CCNGG 3 cut(s) 478, 632, 653
SfaNI GCATC 2 cut(s) 259, 430
SmiMI CAYNNNNRTG 2 cut(s) 73, 174
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 3 cut(s) 110, 183, 453
SsiI CCGC 3 cut(s) 62, 101, 428
SspMI CTAG 2 cut(s) 47, 458
StyD4I CCNGG 3 cut(s) 476, 630, 651
TaaI ACNGT 4 cut(s) 98, 214, 343, 395
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 110, 183, 453
TauI GCSGC 1 cut(s) 65
TscAI CASTG 2 cut(s) 19, 346
TseFI GTSAC 2 cut(s) 200, 208
TseI GCWGC 3 cut(s) 311, 318, 413
Tsp45I GTSAC 2 cut(s) 200, 208
TspDTI ATGAA 2 cut(s) 103, 475
TspRI CASTG 2 cut(s) 19, 346
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 47, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.