MD10G1097500.v1.1

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
15510260 .. 15512438
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1097500.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGGCAGCCTTGAAGTGGAGAGAAAGACTACAGGATGGGCTGCAAGAGACTCATCTGGAATACTCTCACCCTACACCTACAATATTAGGAACACAGGGCCAGAGGATGTTTACGTCAAGGTTCTATGCTGTGGAGTTTGCCACTCGGATCTTCACCAGATCAAAAATGACCTTGGCATGTCAAACTATCCCATGGTTCCCGGGCATGAGGTGGTTGGTGAGGTGGTGGAGGTGGGATCAGATGTGACAAAGTTCAGAGCAGGAGACGTGGTTGGAGTTGGCCTCCTTGTTGGTTGCTGCAGAAACTGCAGCCCATGCAAAACGGACAACGAGCAGTACTGCAACAAGAAAATCTGGTCTTACAACGACACTTACACCGATGGCAAAACTACCCAAGGCGGCTTTGCCGGTGCCCTCGTCGCTGATCAAAAGTTTGTGGTGAAGATACCGGAGGGAATGGTGCCGGAACAGGCGGCGCCACTGCTGTGCGCTGGGGTGACAGTATACAGCCCGCTGAGGCACTTCGGCCTGAACGTGAGTGGGTTAAGAGGAGGAATATTAGGGCTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCCAAAGCAATGGGACACCATGTGACCGTGATAAGCTCATCATATAAGAAAAGAGAGGAGGCTTTGGAGCATGTCGGGGCTGATGCTTTCTTGGTCAGCTCAGATGCCACAAAAATGCAGGAGGCTGCAGATTCATTGGATTACATCATTGACACAGTGCCTGTTGGGCACCCACTTGAGCCTTACCTCTCTTTGTTGAAGCTTGATGGGAAATTGATCTTGATGGGTGTTATTAACACCCCATTACAATTTGTCTCCCCAATGGTCATGCTTGGGAGGAAGACAATCACCGGGAGCTTTGTGGGAAGCATGAAGGAAACTGAGGAGATGCTTGAGTTTTGCAAAGAGAAAGGATTAACATCAATGATTGAAGTGGTTAAGATGGATTACGTCAACACAGCGTTTGAGAGGTTGGAGAAGAACGATGTTAGGTACAGGTTCGTCGTAGATGTGGCCGGCAGCAATCTTATTTAG

Protein Analysis

357

Amino Acids

38.59

Weight (kDa)

5.88

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 151 2.2e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 191 - 314 2.6e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 410, 460, 475, 765
AccI GTMKAC 1 cut(s) 504
AciI CCGC 3 cut(s) 399, 473, 512
AclWI GGATC 2 cut(s) 156, 244
AcoI YGGCCR 1 cut(s) 1050
AcyI GRCGYC 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 619
AfaI GTAC 2 cut(s) 338, 1031
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 14, 796, 968
AjiI CACGTC 1 cut(s) 268
AleI CACNNNNGTG 1 cut(s) 484
AluBI AGCT 4 cut(s) 633, 696, 799, 894
AluI AGCT 4 cut(s) 633, 696, 799, 894
Alw26I GTCTC 3 cut(s) 42, 258, 856
AlwI GGATC 2 cut(s) 156, 244
AlwNI CAGNNNCTG 2 cut(s) 306, 758
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 4 cut(s) 98, 280, 526, 1050
ApeKI GCWGC 6 cut(s) 6, 41, 297, 309, 722, 1056
AspLEI GCGC 2 cut(s) 478, 491
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 3 cut(s) 201, 202, 889
AsuHPI GGTGA 7 cut(s) 60, 146, 230, 451, 508, 601, 877
AvaI CYCGRG 1 cut(s) 200
BaeGI GKGCMC 2 cut(s) 415, 768
BanI GGYRCC 4 cut(s) 410, 460, 475, 765
BbsI GAAGAC 1 cut(s) 884
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 5 cut(s) 18, 28, 284, 321, 709
BccI CCATC 5 cut(s) 30, 374, 797, 814, 973
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 3 cut(s) 201, 202, 889
BcoDI GTCTC 3 cut(s) 42, 258, 856
BfmI CTRYAG 4 cut(s) 30, 298, 307, 723
BfoI RGCGCY 1 cut(s) 479
BglI GCCNNNNNGGC 1 cut(s) 763
BisI GCNGC 8 cut(s) 7, 42, 298, 310, 400, 474, 723, 1057
BlsI GCNGC 8 cut(s) 8, 43, 299, 311, 401, 475, 724, 1058
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 3 cut(s) 201, 202, 889
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 5 cut(s) 198, 412, 462, 477, 767
BmrFI CCNGG 3 cut(s) 201, 202, 889
BmsI GCATC 3 cut(s) 670, 691, 915
BpiI GAAGAC 1 cut(s) 884
BplI GAGNNNNNCTC 2 cut(s) 267, 299
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 794, 950
BpuMI CCSGG 3 cut(s) 201, 202, 889
BsaBI GATNNNNATC 1 cut(s) 955
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 4 cut(s) 172, 192, 200, 394
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 2 cut(s) 407, 1052
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 955
BseDI CCNNGG 4 cut(s) 172, 192, 200, 394
BseGI GGATG 2 cut(s) 41, 112
BseJI GATNNNNATC 1 cut(s) 955
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 3 cut(s) 506, 711, 909
BseRI GAGGAG 3 cut(s) 564, 668, 935
BseSI GKGCMC 2 cut(s) 415, 768
BseXI GCAGC 5 cut(s) 18, 28, 284, 321, 709
BseYI CCCAGC 1 cut(s) 491
BshFI GGCC 4 cut(s) 100, 282, 528, 1052
BshNI GGYRCC 4 cut(s) 410, 460, 475, 765
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 6 cut(s) 201, 408, 449, 464, 888, 1053
BslFI GGGAC 2 cut(s) 591, 624
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 3 cut(s) 42, 258, 856
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 2 cut(s) 591, 624
BsnI GGCC 4 cut(s) 100, 282, 528, 1052
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 415, 768
Bsp143I GATC 5 cut(s) 148, 159, 236, 424, 813
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 399, 473, 512
BspANI GGCC 4 cut(s) 100, 282, 528, 1052
BspCNI CTCAG 3 cut(s) 507, 710, 910
BspLI GGNNCC 5 cut(s) 198, 412, 462, 477, 767
BspMAI CTGCAG 3 cut(s) 302, 311, 727
BspPI GGATC 2 cut(s) 156, 244
BspT107I GGYRCC 4 cut(s) 410, 460, 475, 765
BsrDI GCAATG 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 407, 1052
BssAI RCCGGY 2 cut(s) 407, 1052
BssECI CCNNGG 4 cut(s) 172, 192, 200, 394
BssMI GATC 5 cut(s) 148, 159, 236, 424, 813
BssNAI GTATAC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 476
BssT1I CCWWGG 3 cut(s) 172, 192, 394
Bst1107I GTATAC 1 cut(s) 505
Bst4CI ACNGT 3 cut(s) 502, 625, 754
BstACI GRCGYC 1 cut(s) 476
BstAPI GCANNNNNTGC 2 cut(s) 306, 315
BstC8I GCNNGC 2 cut(s) 512, 1054
BstDEI CTNAG 3 cut(s) 515, 697, 918
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 41, 112
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 2 cut(s) 478, 491
BstKTI GATC 5 cut(s) 151, 162, 239, 427, 816
BstMAI GTCTC 3 cut(s) 42, 258, 856
BstMBI GATC 5 cut(s) 148, 159, 236, 424, 813
BstMWI GCNNNNNNNGC 4 cut(s) 306, 315, 419, 763
BstNSI RCATGY 2 cut(s) 181, 671
BstSCI CCNGG 3 cut(s) 199, 200, 887
BstSFI CTRYAG 4 cut(s) 30, 298, 307, 723
BstSLI GKGCMC 2 cut(s) 415, 768
BstV1I GCAGC 5 cut(s) 18, 28, 284, 321, 709
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 505
BsuRI GGCC 4 cut(s) 100, 282, 528, 1052
BtgI CCRYGG 1 cut(s) 192
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 41, 112
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 2 cut(s) 479, 759
Cac8I GCNNGC 2 cut(s) 512, 1054
CaiI CAGNNNCTG 2 cut(s) 306, 758
CfoI GCGC 2 cut(s) 478, 491
Cfr10I RCCGGY 2 cut(s) 407, 1052
Cfr13I GGNCC 1 cut(s) 98
Cfr9I CCCGGG 1 cut(s) 200
Csp6I GTAC 2 cut(s) 337, 1030
CviAII CATG 9 cut(s) 178, 193, 206, 315, 583, 617, 668, 865, 907
CviQI GTAC 2 cut(s) 337, 1030
DdeI CTNAG 3 cut(s) 515, 697, 918
DinI GGCGCC 1 cut(s) 477
DpnI GATC 5 cut(s) 150, 161, 238, 426, 815
DpnII GATC 5 cut(s) 148, 159, 236, 424, 813
DraIII CACNNNGTG 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 1050
Eco130I CCWWGG 3 cut(s) 172, 192, 394
Eco88I CYCGRG 1 cut(s) 200
EcoT14I CCWWGG 3 cut(s) 172, 192, 394
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
ErhI CCWWGG 3 cut(s) 172, 192, 394
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 9 cut(s) 181, 196, 209, 318, 586, 620, 671, 868, 910
FaqI GGGAC 2 cut(s) 591, 624
FatI CATG 9 cut(s) 177, 192, 205, 314, 582, 616, 667, 864, 906
FauI CCCGC 1 cut(s) 519
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 8 cut(s) 7, 42, 298, 310, 400, 474, 723, 1057
FokI GGATG 2 cut(s) 48, 119
Fsp4HI GCNGC 8 cut(s) 7, 42, 298, 310, 400, 474, 723, 1057
GlaI GCGC 2 cut(s) 477, 490
GluI GCNGC 8 cut(s) 7, 42, 298, 310, 400, 474, 723, 1057
GsaI CCCAGC 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 4 cut(s) 100, 282, 528, 1052
HapII CCGG 6 cut(s) 201, 408, 449, 464, 888, 1053
HhaI GCGC 2 cut(s) 478, 491
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 9 cut(s) 181, 196, 209, 318, 586, 620, 671, 868, 910
Hin6I GCGC 2 cut(s) 476, 489
HinP1I GCGC 2 cut(s) 476, 489
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 2 cut(s) 50, 728
HpaII CCGG 6 cut(s) 201, 408, 449, 464, 888, 1053
HphI GGTGA 7 cut(s) 60, 146, 230, 451, 508, 601, 877
Hpy166II GTNNAC 3 cut(s) 112, 505, 991
Hpy188I TCNGA 4 cut(s) 148, 241, 257, 700
Hpy188III TCNNGA 2 cut(s) 57, 817
Hpy8I GTNNAC 3 cut(s) 112, 505, 991
Hpy99I CGWCG 2 cut(s) 422, 1043
HpyAV CCTTC 1 cut(s) 904
HpyCH4III ACNGT 3 cut(s) 502, 625, 754
HpyCH4IV ACGT 4 cut(s) 114, 267, 534, 987
HpyCH4V TGCA 8 cut(s) 44, 300, 309, 318, 342, 715, 725, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 306, 315, 419, 763
HpyF3I CTNAG 3 cut(s) 515, 697, 918
HpySE526I ACGT 4 cut(s) 114, 267, 534, 987
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 9 cut(s) 181, 196, 209, 318, 586, 620, 671, 868, 910
HspAI GCGC 2 cut(s) 476, 489
KasI GGCGCC 1 cut(s) 475
KroI GCCGGC 1 cut(s) 1052
KroNI GCCGGC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 5 cut(s) 148, 159, 236, 424, 813
LmnI GCTCC 2 cut(s) 664, 891
Lsp1109I GCAGC 5 cut(s) 18, 28, 284, 321, 709
LweI GCATC 3 cut(s) 670, 691, 915
MaeII ACGT 4 cut(s) 114, 267, 534, 987
MaeIII GTNAC 3 cut(s) 244, 496, 619
MalI GATC 5 cut(s) 150, 161, 238, 426, 815
MboI GATC 5 cut(s) 148, 159, 236, 424, 813
MboII GAAGA 5 cut(s) 143, 454, 604, 889, 1027
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 415, 768
MluCI AATT 2 cut(s) 809, 845
Mly113I GGCGCC 1 cut(s) 476
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 253, 990
MroNI GCCGGC 1 cut(s) 1052
MseI TTAA 4 cut(s) 545, 831, 953, 975
MslI CAYNNNNRTG 3 cut(s) 484, 587, 710
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 6 cut(s) 201, 408, 449, 464, 888, 1053
MspR9I CCNGG 3 cut(s) 201, 202, 889
MwoI GCNNNNNNNGC 4 cut(s) 306, 315, 419, 763
NaeI GCCGGC 1 cut(s) 1054
NarI GGCGCC 1 cut(s) 476
NciI CCSGG 3 cut(s) 201, 202, 889
NcoI CCATGG 1 cut(s) 192
NdeII GATC 5 cut(s) 148, 159, 236, 424, 813
NgoMIV GCCGGC 1 cut(s) 1052
NlaIII CATG 9 cut(s) 181, 196, 209, 318, 586, 620, 671, 868, 910
NlaIV GGNNCC 5 cut(s) 198, 412, 462, 477, 767
NmuCI GTSAC 3 cut(s) 244, 496, 619
NspI RCATGY 2 cut(s) 181, 671
OliI CACNNNNGTG 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PdiI GCCGGC 1 cut(s) 1054
PfeI GAWTC 1 cut(s) 728
PkrI GCNGC 8 cut(s) 8, 43, 299, 311, 401, 475, 724, 1058
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 491
PspN4I GGNNCC 5 cut(s) 198, 412, 462, 477, 767
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 3 cut(s) 302, 311, 727
PstNI CAGNNNCTG 2 cut(s) 306, 758
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 2 cut(s) 338, 1031
RsaNI GTAC 2 cut(s) 337, 1030
RseI CAYNNNNRTG 3 cut(s) 484, 587, 710
SaqAI TTAA 4 cut(s) 545, 831, 953, 975
SatI GCNGC 8 cut(s) 7, 42, 298, 310, 400, 474, 723, 1057
Sau3AI GATC 5 cut(s) 148, 159, 236, 424, 813
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 3 cut(s) 201, 202, 889
SduI GDGCHC 2 cut(s) 415, 768
SfaNI GCATC 3 cut(s) 670, 691, 915
SfcI CTRYAG 4 cut(s) 30, 298, 307, 723
SfoI GGCGCC 1 cut(s) 477
SmaI CCCGGG 1 cut(s) 202
SmiMI CAYNNNNRTG 3 cut(s) 484, 587, 710
SmlI CTYRAG 2 cut(s) 773, 929
SmoI CTYRAG 2 cut(s) 773, 929
Sse9I AATT 2 cut(s) 809, 845
SsiI CCGC 3 cut(s) 399, 473, 512
SspDI GGCGCC 1 cut(s) 475
SspI AATATT 2 cut(s) 85, 558
StyD4I CCNGG 3 cut(s) 199, 200, 887
StyI CCWWGG 3 cut(s) 172, 192, 394
TaaI ACNGT 3 cut(s) 502, 625, 754
TaiI ACGT 4 cut(s) 117, 270, 537, 990
TasI AATT 2 cut(s) 809, 845
TatI WGTACW 1 cut(s) 336
TauI GCSGC 2 cut(s) 402, 476
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 4 cut(s) 545, 831, 953, 975
Tru9I TTAA 4 cut(s) 545, 831, 953, 975
TscAI CASTG 2 cut(s) 486, 759
TseFI GTSAC 3 cut(s) 244, 496, 619
TseI GCWGC 6 cut(s) 6, 41, 297, 309, 722, 1056
Tsp45I GTSAC 3 cut(s) 244, 496, 619
TspDTI ATGAA 2 cut(s) 720, 923
TspGWI ACGGA 1 cut(s) 338
TspMI CCCGGG 1 cut(s) 200
TspRI CASTG 2 cut(s) 486, 759
XceI RCATGY 2 cut(s) 181, 671
XmaI CCCGGG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 504
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.