FvH4_1g16790

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001379
Physical Location & Seq
Forward (+)
9724572 .. 9726969
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16790.t2

Sequence Viewer

Length: 1059 bp
ATGGAAGAAAGGAAGGCATTTGGTTGGGCTGCCAGAGACCCTTCTGGAATTCTCTCTCTTTTCCAATTCAATCTCAGGAAAATGGGTTCTGAAGACGTGGTATTGAAGGTTCTGTACTGTGGGGTAGACCACACTGATCTTCATCAGATGAGGAATGAGATTCACAGTACTAACTATCCTTTGGTCCCAGGGCATGAAGTAGTGGGAGAAGTGGTGGAGTTGGGTTCAGAGGTGAAGAAATTTAGAGTTGGGGACATAGTGGGAGTTGGATGCATTGTAGGGTCTTGTGGAGAATGCTTGTATTGCCAATCCAACATGGAGCAGTACTGCCCTAGGACAATCTTCACTATAAATGGCACCAACAATGATGGAAGCCCGACTCACGGAGGCTTCTCATCTGCCATGGTTGTTCATCAAAGGTTTGTGGTTCGGATACCAGGAAAGCTAGCACCGGAGCAGGCGGCTCCGTTGCTGTGTGCTGGGGTTACAGCTTACAGTCCACTGAAGCAATTCATGGGGTATAACAGGGTTGTGAGGGGAGGGATTTTGGGTTTAGGTGGAGTTGGACACTTAGGTGTCATAATTGCAAAGGCAATGGGTCACCATGTGACTGTGATAAGCTCTTCTGATAGGAAGAGGGATGAGGCTTTGGATATTTTAGGTGCAGATGCTTTTATAGTGAGCTCCAATGAGGCTGAGATGGAGGGAGCTGCTAGCAGCCTCGACTATATCCTCGACACTGTACCGGCTTTCCACCCTCTGCATCCTTACCTTTCACTCCTCAAGGTTGTTGGAAAGCTCATAGTAGTTGCTGCTGTTCCTCAACCACTTCAGTTTGATGCAGCAGACATAATTCTAGGGAAGAGGAGCATTTCCGGGAGCTTCATCGGAAGCATGGAAGAAACGCAGGAAATACTTGATTTCTGGGCAGACAAGGATTTGACGACTATGATAGAGATAGTAAAAATGGATTATGCTAACAAGGCATTTGAGAGGATGGAAAGAAATGATGTGAGGTTTAGGTTTGTCCTGGATGTAGGTGGAAGCAACCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

353

Amino Acids

38.39

Weight (kDa)

5.58

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 30 - 146 7.4e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 187 - 286 6.9e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 461
AcsI RAATTY 2 cut(s) 48, 239
AcuI CTGAAG 3 cut(s) 111, 524, 815
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 4 cut(s) 116, 169, 326, 744
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 2 cut(s) 70, 106
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 4 cut(s) 187, 436, 1029, 1050
AleI CACNNNNGTG 1 cut(s) 573
AloI GAACNNNNNNTCC 2 cut(s) 70, 102
AluBI AGCT 7 cut(s) 445, 491, 621, 684, 710, 799, 882
AluI AGCT 7 cut(s) 445, 491, 621, 684, 710, 799, 882
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 5 cut(s) 29, 710, 717, 812, 842
ApoI RAATTY 2 cut(s) 48, 239
Asp700I GAANNNNTTC 1 cut(s) 509
AspA2I CCTAGG 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 877
AsuHPI GGTGA 2 cut(s) 244, 593
AsuNHI GCTAGC 2 cut(s) 445, 713
AvaII GGWCC 1 cut(s) 184
AvrII CCTAGG 1 cut(s) 332
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 686
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 5 cut(s) 16, 697, 729, 799, 854
BccI CCATC 3 cut(s) 362, 694, 991
BciT130I CCWGG 4 cut(s) 189, 438, 1031, 1052
BciVI GTATCC 1 cut(s) 426
BcnI CCSGG 1 cut(s) 877
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 4 cut(s) 333, 446, 714, 857
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 6 cut(s) 30, 462, 711, 718, 813, 843
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 6 cut(s) 31, 463, 712, 719, 814, 844
BmcAI AGTACT 2 cut(s) 169, 326
Bme1390I CCNGG 5 cut(s) 189, 438, 877, 1031, 1052
Bme18I GGWCC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 3 cut(s) 186, 358, 465
BmrFI CCNGG 5 cut(s) 189, 438, 877, 1031, 1052
BmsI GCATC 4 cut(s) 260, 658, 772, 829
BmtI GCTAGC 2 cut(s) 449, 717
BpiI GAAGAC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 767
BpuMI CCSGG 1 cut(s) 877
BsaBI GATNNNNATC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 187, 188, 332, 402
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 4 cut(s) 189, 438, 1031, 1052
BseDI CCNNGG 4 cut(s) 187, 188, 332, 402
BseGI GGATG 5 cut(s) 275, 646, 763, 1002, 1039
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 2 cut(s) 88, 687
BseRI GAGGAG 2 cut(s) 770, 880
BseXI GCAGC 5 cut(s) 16, 697, 729, 799, 854
BseYI CCCAGC 1 cut(s) 479
BsgI GTGCAG 1 cut(s) 684
BshNI GGYRCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 686
BsiSI CCGG 3 cut(s) 452, 746, 876
BslFI GGGAC 2 cut(s) 170, 266
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 170, 266
BsmI GAATGC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 1 cut(s) 461
BspCNI CTCAG 2 cut(s) 87, 688
BspLI GGNNCC 3 cut(s) 186, 358, 465
BspOI GCTAGC 2 cut(s) 449, 717
BspQI GCTCTTC 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 600
BsrFI RCCGGY 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 745
BssECI CCNNGG 4 cut(s) 187, 188, 332, 402
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 332, 402
Bst2UI CCWGG 4 cut(s) 189, 438, 1031, 1052
Bst4CI ACNGT 5 cut(s) 119, 167, 497, 613, 742
Bst6I CTCTTC 3 cut(s) 628, 629, 857
BstC8I GCNNGC 3 cut(s) 447, 459, 715
BstDEI CTNAG 3 cut(s) 74, 571, 696
BstDSI CCRYGG 1 cut(s) 402
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 5 cut(s) 275, 646, 763, 1002, 1039
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 303, 983
BstNI CCWGG 4 cut(s) 189, 438, 1031, 1052
BstPI GGTNACC 1 cut(s) 599
BstSCI CCNGG 5 cut(s) 187, 436, 875, 1029, 1050
BstV1I GCAGC 5 cut(s) 16, 697, 729, 799, 854
BstV2I GAAGAC 1 cut(s) 99
BsuI GTATCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 402
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 5 cut(s) 275, 646, 763, 1002, 1039
BtsIMutI CAGTG 3 cut(s) 132, 500, 738
Cac8I GCNNGC 3 cut(s) 447, 459, 715
Cfr10I RCCGGY 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 4 cut(s) 115, 168, 325, 743
CviAII CATG 6 cut(s) 194, 316, 403, 514, 605, 895
CviQI GTAC 4 cut(s) 115, 168, 325, 743
DdeI CTNAG 3 cut(s) 74, 571, 696
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraIII CACNNNGTG 1 cut(s) 607
Eam1104I CTCTTC 3 cut(s) 628, 629, 857
EarI CTCTTC 3 cut(s) 628, 629, 857
Ecl136II GAGCTC 1 cut(s) 684
Eco130I CCWWGG 2 cut(s) 332, 402
Eco24I GRGCYC 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 684
Eco57I CTGAAG 3 cut(s) 111, 524, 815
Eco91I GGTNACC 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 684
EcoO65I GGTNACC 1 cut(s) 599
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 4 cut(s) 187, 436, 1029, 1050
EcoT14I CCWWGG 2 cut(s) 332, 402
EcoT22I ATGCAT 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 2 cut(s) 332, 402
FaeI CATG 6 cut(s) 197, 319, 406, 517, 608, 898
FaqI GGGAC 2 cut(s) 170, 266
FatI CATG 6 cut(s) 193, 315, 402, 513, 604, 894
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 6 cut(s) 30, 462, 711, 718, 813, 843
FokI GGATG 5 cut(s) 282, 653, 750, 1009, 1046
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 6 cut(s) 30, 462, 711, 718, 813, 843
FspBI CTAG 4 cut(s) 333, 446, 714, 857
GluI GCNGC 6 cut(s) 30, 462, 711, 718, 813, 843
GsaI CCCAGC 1 cut(s) 483
HapII CCGG 3 cut(s) 452, 746, 876
Hin1II CATG 6 cut(s) 197, 319, 406, 517, 608, 898
HinfI GANTC 2 cut(s) 160, 379
HpaII CCGG 3 cut(s) 452, 746, 876
HphI GGTGA 2 cut(s) 244, 593
Hpy166II GTNNAC 2 cut(s) 127, 500
Hpy188I TCNGA 6 cut(s) 91, 147, 229, 432, 628, 890
Hpy188III TCNNGA 2 cut(s) 45, 76
Hpy8I GTNNAC 2 cut(s) 127, 500
HpyAV CCTTC 3 cut(s) 7, 51, 100
HpyCH4III ACNGT 5 cut(s) 119, 167, 497, 613, 742
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 5 cut(s) 273, 587, 665, 763, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 983
HpyF3I CTNAG 3 cut(s) 74, 571, 696
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 6 cut(s) 197, 319, 406, 517, 608, 898
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 7 cut(s) 319, 454, 469, 689, 707, 867, 879
Lsp1109I GCAGC 5 cut(s) 16, 697, 729, 799, 854
LweI GCATC 4 cut(s) 260, 658, 772, 829
MaeI CTAG 4 cut(s) 333, 446, 714, 857
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 3 cut(s) 484, 599, 607
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 9 cut(s) 17, 104, 131, 247, 334, 615, 646, 874, 911
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 6 cut(s) 48, 65, 239, 509, 582, 852
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 4 cut(s) 247, 336, 544, 772
Mph1103I ATGCAT 1 cut(s) 275
MroXI GAANNNNTTC 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 573
MspI CCGG 3 cut(s) 452, 746, 876
MspR9I CCNGG 5 cut(s) 189, 438, 877, 1031, 1052
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 4 cut(s) 189, 438, 1031, 1052
MwoI GCNNNNNNNGC 2 cut(s) 303, 983
NciI CCSGG 1 cut(s) 877
NcoI CCATGG 1 cut(s) 402
NdeII GATC 1 cut(s) 136
NheI GCTAGC 2 cut(s) 445, 713
NlaIII CATG 6 cut(s) 197, 319, 406, 517, 608, 898
NlaIV GGNNCC 3 cut(s) 186, 358, 465
NmuCI GTSAC 2 cut(s) 599, 607
NsiI ATGCAT 1 cut(s) 275
OliI CACNNNNGTG 1 cut(s) 573
PasI CCCWGGG 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 628
PctI GAATGC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 1 cut(s) 160
PfoI TCCNGGA 2 cut(s) 875, 1029
PkrI GCNGC 6 cut(s) 31, 463, 712, 719, 814, 844
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 686
Psp6I CCWGG 4 cut(s) 187, 436, 1029, 1050
PspEI GGTNACC 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 479
PspGI CCWGG 4 cut(s) 187, 436, 1029, 1050
PspN4I GGNNCC 3 cut(s) 186, 358, 465
PspPI GGNCC 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 93, 125
RsaI GTAC 4 cut(s) 116, 169, 326, 744
RsaNI GTAC 4 cut(s) 115, 168, 325, 743
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 686
SapI GCTCTTC 1 cut(s) 628
SatI GCNGC 6 cut(s) 30, 462, 711, 718, 813, 843
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 2 cut(s) 169, 326
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 5 cut(s) 189, 438, 877, 1031, 1052
SduI GDGCHC 1 cut(s) 686
SfaNI GCATC 4 cut(s) 260, 658, 772, 829
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 6 cut(s) 48, 65, 239, 509, 582, 852
SsiI CCGC 1 cut(s) 461
SspMI CTAG 4 cut(s) 333, 446, 714, 857
SstI GAGCTC 1 cut(s) 686
StyD4I CCNGG 5 cut(s) 187, 436, 875, 1029, 1050
StyI CCWWGG 2 cut(s) 332, 402
TaaI ACNGT 5 cut(s) 119, 167, 497, 613, 742
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 723, 735
TasI AATT 6 cut(s) 48, 65, 239, 509, 582, 852
TatI WGTACW 3 cut(s) 114, 167, 324
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 1 cut(s) 160
TscAI CASTG 3 cut(s) 139, 507, 745
TseFI GTSAC 2 cut(s) 599, 607
TseI GCWGC 5 cut(s) 29, 710, 717, 812, 842
Tsp45I GTSAC 2 cut(s) 599, 607
TspDTI ATGAA 5 cut(s) 131, 210, 401, 502, 874
TspGWI ACGGA 2 cut(s) 399, 456
TspRI CASTG 3 cut(s) 139, 507, 745
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 2 cut(s) 48, 239
XmaJI CCTAGG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 4 cut(s) 333, 446, 714, 857
ZrmI AGTACT 2 cut(s) 169, 326
Zsp2I ATGCAT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.