Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

7441451 .. 7445312

Gene Structure 3862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G21215.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCGGCGCCGGAATCCACCCATACCACCAGCAGTGGCCGCCGGCAGGTGCGCCGCCTCCTCCAGCCGCAGTATCATCAGCTGCTCCACCACATCCGCCGCCCATTCATCACCATCCTCCTCCTCCTCCTGTTTTAGTTGACAACCATAATCGTCCTCCTTATGACGAGCTGCGGACAATCTTCATCGCAGGGCTTCCCGATGATGTAAAAGAGAGAGAGCTTTTGAATCTCTTGAGATGGTTGCCTGGTTACGAGGCTTCTCAGGTGAACTTCAAGGGAGAAAAGCCCATGGGGTTTGCTCTTTTCTCCACAGCTCAGTTTGCAATGGCAGCCAAAGATACCCTTCAGCATATGGTGTTTGATGCTGAGTCAAAGTCTGTGATACATACAGAGATGGCCAAGAAGAATCTTTTTGTTAAAAGAGGTATTGTTGGGGATTCAAATGCTTATGATCAAAGTAAGCGCCTACGAACTGGTGGTGACTGCACACACTCTGTGTATAGTCCATCTCCTTTCCATCCTCCACCTCCTCCTGTGTGGGGACCTCCTCATGGATATATGGCACCTGCACCTCCACCATATGATCCCTATGCAGGTTATCATGCTCCCCCTGTACCAATGCCTACGCCCCCACCTATAGCAGCTCCTAGTTCTTATGTGCCTGTCCAGAATATTAAGGATAATCCACCTTGCAATACCCTATTTATTGGTAATCTTGGGGAGAATATAAACGAAGAAGAATTGAGGAGCCTGTTGAGTGCGCAACCTGGTTTCAAACAAATGAAGATTCTGAGACAAGAAAGGCATACAGTTTGCTTTATTGAATTCGAGGATGTCAATAGTGCCACAAATGTTCACCATAATTTGCAAGGTGCTGTCATTCCAAGTTCTGGTTCAATTGGCATGAGGATCCAATATTCAAAGAATCCATATGGGAAGAGAAAGGAAGGTGGCGGCTATTCTTTCTTTCCTTCTCCGAGTGCTAATGGAGCCCAAGGAGCCCTGACATATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

339

Amino Acids

36.98

Weight (kDa)

7.29

Isoelectric Point (pI)

67.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	235 - 296	1.5e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	38, 577
Acc16I	TGCGCA	1 cut(s)	765
Acc36I	ACCTGC	3 cut(s)	38, 577, 587
AccB1I	GGYRCC	2 cut(s)	8, 565
AccB7I	CCANNNNNTGG	1 cut(s)	893
AciI	CCGC	7 cut(s)	41, 56, 69, 98, 101, 175, 957
AclWI	GGATC	3 cut(s)	581, 907, 920
AcoI	YGGCCR	3 cut(s)	3, 38, 399
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	5 cut(s)	47, 542, 554, 596, 893
AgsI	TTSAA	7 cut(s)	229, 277, 444, 778, 827, 900, 924
AjnI	CCWGG	2 cut(s)	247, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	5 cut(s)	83, 172, 223, 317, 647
AluI	AGCT	5 cut(s)	83, 172, 223, 317, 647
Alw26I	GTCTC	1 cut(s)	790
AlwI	GGATC	3 cut(s)	581, 907, 920
AoxI	GGCC	3 cut(s)	3, 38, 399
ApeKI	GCWGC	4 cut(s)	83, 172, 332, 644
ApoI	RAATTY	1 cut(s)	827
AspLEI	GCGC	4 cut(s)	11, 55, 468, 766
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	4 cut(s)	104, 280, 494, 851
AvaII	GGWCC	1 cut(s)	545
BalI	TGGCCA	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	912
BanI	GGYRCC	2 cut(s)	8, 565
BanII	GRGCYC	2 cut(s)	997, 1006
BbvI	GCAGC	4 cut(s)	70, 159, 344, 656
BccI	CCATC	5 cut(s)	123, 234, 391, 517, 528
BciT130I	CCWGG	2 cut(s)	249, 771
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	790
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	2 cut(s)	12, 469
BfuAI	ACCTGC	3 cut(s)	38, 577, 587
BisI	GCNGC	9 cut(s)	41, 56, 69, 84, 101, 173, 333, 645, 958
BlsI	GCNGC	9 cut(s)	42, 57, 70, 85, 102, 174, 334, 646, 959
Bme1390I	CCNGG	2 cut(s)	249, 771
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	7 cut(s)	10, 546, 567, 752, 914, 994, 1003
BmrFI	CCNGG	2 cut(s)	249, 771
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	291, 997
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 542, 554, 596, 893
Bse118I	RCCGGY	2 cut(s)	5, 43
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	249, 771
BseDI	CCNNGG	2 cut(s)	291, 997
BseGI	GGATG	4 cut(s)	94, 115, 520, 841
BseLI	CCNNNNNNNGG	5 cut(s)	47, 542, 554, 596, 893
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	278, 332, 360, 785
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	7 cut(s)	51, 111, 114, 117, 522, 540, 763
BseXI	GCAGC	4 cut(s)	70, 159, 344, 656
BsgI	GTGCAG	2 cut(s)	472, 555
BshFI	GGCC	3 cut(s)	5, 40, 401
BshNI	GGYRCC	2 cut(s)	8, 565
BsiSI	CCGG	3 cut(s)	6, 12, 44
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	5 cut(s)	47, 542, 554, 596, 893
BsmAI	GTCTC	1 cut(s)	790
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	3 cut(s)	5, 40, 401
Bsp1286I	GDGCHC	2 cut(s)	997, 1006
Bsp143I	GATC	3 cut(s)	454, 586, 912
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	7 cut(s)	41, 56, 69, 98, 101, 175, 957
BspANI	GGCC	3 cut(s)	5, 40, 401
BspCNI	CTCAG	4 cut(s)	277, 331, 361, 786
BspLI	GGNNCC	7 cut(s)	10, 546, 567, 752, 914, 994, 1003
BspMI	ACCTGC	3 cut(s)	38, 577, 587
BspPI	GGATC	3 cut(s)	581, 907, 920
BspT107I	GGYRCC	2 cut(s)	8, 565
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	5, 43
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	2 cut(s)	5, 43
BssECI	CCNNGG	2 cut(s)	291, 997
BssMI	GATC	3 cut(s)	454, 586, 912
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	291, 997
Bst2UI	CCWGG	2 cut(s)	249, 771
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	1 cut(s)	935
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	7, 45
BstDEI	CTNAG	4 cut(s)	264, 318, 369, 794
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	4 cut(s)	94, 115, 520, 841
BstH2I	RGCGCY	2 cut(s)	12, 469
BstHHI	GCGC	4 cut(s)	11, 55, 468, 766
BstKTI	GATC	3 cut(s)	457, 589, 915
BstMAI	GTCTC	1 cut(s)	790
BstMBI	GATC	3 cut(s)	454, 586, 912
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 323, 332, 992, 1001
BstNI	CCWGG	2 cut(s)	249, 771
BstSCI	CCNGG	2 cut(s)	247, 769
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	70, 159, 344, 656
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
BsuRI	GGCC	3 cut(s)	5, 40, 401
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	94, 115, 520, 841
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
BveI	ACCTGC	3 cut(s)	38, 577, 587
Cac8I	GCNNGC	2 cut(s)	7, 45
CfoI	GCGC	4 cut(s)	11, 55, 468, 766
Cfr10I	RCCGGY	2 cut(s)	5, 43
Cfr13I	GGNCC	1 cut(s)	545
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	4 cut(s)	292, 554, 605, 907
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	4 cut(s)	264, 318, 369, 794
DinI	GGCGCC	1 cut(s)	10
DpnI	GATC	3 cut(s)	456, 588, 914
DpnII	GATC	3 cut(s)	454, 586, 912
DraIII	CACNNNGTG	1 cut(s)	499
EaeI	YGGCCR	3 cut(s)	3, 38, 399
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	291, 997
Eco24I	GRGCYC	2 cut(s)	997, 1006
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	247, 769
EcoT14I	CCWWGG	2 cut(s)	291, 997
EcoT38I	GRGCYC	2 cut(s)	997, 1006
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	291, 997
FaeI	CATG	4 cut(s)	295, 557, 608, 910
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	4 cut(s)	291, 553, 604, 906
FauNDI	CATATG	3 cut(s)	354, 583, 934
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	9 cut(s)	41, 56, 69, 84, 101, 173, 333, 645, 958
FokI	GGATG	4 cut(s)	81, 102, 507, 848
FriOI	GRGCYC	2 cut(s)	997, 1006
Fsp4HI	GCNGC	9 cut(s)	41, 56, 69, 84, 101, 173, 333, 645, 958
FspBI	CTAG	1 cut(s)	651
FspI	TGCGCA	1 cut(s)	765
GlaI	GCGC	4 cut(s)	10, 54, 467, 765
GluI	GCNGC	9 cut(s)	41, 56, 69, 84, 101, 173, 333, 645, 958
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	2 cut(s)	12, 469
HaeIII	GGCC	3 cut(s)	5, 40, 401
HapII	CCGG	3 cut(s)	6, 12, 44
HhaI	GCGC	4 cut(s)	11, 55, 468, 766
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	295, 557, 608, 910
Hin6I	GCGC	4 cut(s)	9, 53, 466, 764
HinP1I	GCGC	4 cut(s)	9, 53, 466, 764
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	7 cut(s)	15, 229, 371, 409, 440, 790, 928
HpaII	CCGG	3 cut(s)	6, 12, 44
HphI	GGTGA	4 cut(s)	104, 280, 494, 851
Hpy166II	GTNNAC	3 cut(s)	142, 271, 859
Hpy188I	TCNGA	2 cut(s)	795, 981
Hpy188III	TCNNGA	3 cut(s)	200, 235, 670
Hpy8I	GTNNAC	3 cut(s)	142, 271, 859
HpyAV	CCTTC	3 cut(s)	356, 944, 984
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4V	TGCA	6 cut(s)	326, 489, 572, 596, 696, 871
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 323, 332, 992, 1001
HpyF3I	CTNAG	4 cut(s)	264, 318, 369, 794
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	295, 557, 608, 910
HspAI	GCGC	4 cut(s)	9, 53, 466, 764
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	2 cut(s)	5, 43
KroNI	GCCGGC	2 cut(s)	7, 45
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	454, 586, 912
LmnI	GCTCC	6 cut(s)	91, 613, 652, 750, 992, 1001
Lsp1109I	GCAGC	4 cut(s)	70, 159, 344, 656
LweI	GCATC	1 cut(s)	355
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	2 cut(s)	251, 482
MalI	GATC	3 cut(s)	456, 588, 914
MboI	GATC	3 cut(s)	454, 586, 912
MboII	GAAGA	6 cut(s)	175, 418, 749, 752, 799, 952
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	1 cut(s)	912
MhlI	GDGCHC	2 cut(s)	997, 1006
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	4 cut(s)	743, 827, 865, 900
MluNI	TGGCCA	1 cut(s)	401
Mly113I	GGCGCC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	380
Mox20I	TGGCCA	1 cut(s)	401
MroNI	GCCGGC	2 cut(s)	5, 43
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	420, 678
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	3 cut(s)	6, 12, 44
MspR9I	CCNGG	2 cut(s)	249, 771
MunI	CAATTG	1 cut(s)	900
MvaI	CCWGG	2 cut(s)	249, 771
MwoI	GCNNNNNNNGC	5 cut(s)	40, 323, 332, 992, 1001
NaeI	GCCGGC	2 cut(s)	7, 45
NarI	GGCGCC	1 cut(s)	9
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	3 cut(s)	354, 583, 934
NdeII	GATC	3 cut(s)	454, 586, 912
NgoMIV	GCCGGC	2 cut(s)	5, 43
NlaIII	CATG	4 cut(s)	295, 557, 608, 910
NlaIV	GGNNCC	7 cut(s)	10, 546, 567, 752, 914, 994, 1003
NmuCI	GTSAC	1 cut(s)	482
NsbI	TGCGCA	1 cut(s)	765
PaqCI	CACCTGC	2 cut(s)	38, 577
PdiI	GCCGGC	2 cut(s)	7, 45
PfeI	GAWTC	6 cut(s)	15, 229, 409, 440, 790, 928
PflMI	CCANNNNNTGG	1 cut(s)	893
PkrI	GCNGC	9 cut(s)	42, 57, 70, 85, 102, 174, 334, 646, 959
PleI	GAGTC	1 cut(s)	379
PluTI	GGCGCC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	247, 769
PspGI	CCWGG	2 cut(s)	247, 769
PspN4I	GGNNCC	7 cut(s)	10, 546, 567, 752, 914, 994, 1003
PspPI	GGNCC	1 cut(s)	545
PspPPI	RGGWCCY	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	912
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SaqAI	TTAA	2 cut(s)	420, 678
SatI	GCNGC	9 cut(s)	41, 56, 69, 84, 101, 173, 333, 645, 958
Sau3AI	GATC	3 cut(s)	454, 586, 912
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	249, 771
SduI	GDGCHC	2 cut(s)	997, 1006
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	639
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	743, 827, 865, 900
SsiI	CCGC	7 cut(s)	41, 56, 69, 98, 101, 175, 957
SspDI	GGCGCC	1 cut(s)	8
SspI	AATATT	2 cut(s)	676, 920
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	247, 769
StyI	CCWWGG	2 cut(s)	291, 997
TaaI	ACNGT	1 cut(s)	814
TaqI	TCGA	1 cut(s)	831
TasI	AATT	4 cut(s)	743, 827, 865, 900
TauI	GCSGC	5 cut(s)	43, 58, 71, 103, 960
TfiI	GAWTC	6 cut(s)	15, 229, 409, 440, 790, 928
Tru1I	TTAA	2 cut(s)	420, 678
Tru9I	TTAA	2 cut(s)	420, 678
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	4 cut(s)	83, 172, 332, 644
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	98, 175, 800
TspRI	CASTG	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	827
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.