FvH4_6g37450

U1 small nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
29476595 .. 29481105
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37450.t1

Sequence Viewer

Length: 975 bp
ATGGCCGGCGCCGGCATCCACCCCTACCACCAGCAATGGGCCCCGGCGGCAGCCCCTCCTCCTCCCCCGGCCGTCGTCGCCGCCGCGCCTCCACCTCCTCCTCACCACCTCGTCGACAACCCCAACCGGCCCGCCAACGACGAGGTCCGCACCATCTTCATCACCGGTCTTCCCGAAGATGTCAAGGAGAGGGAGATACAGAACCTCCTGAGATGGTTGCCGGGCTACGAGGCCTCTCAGGTCAACTACAAAGGCGAGAAGCCGATGAGCTTCGCTCTCTTCGCCACCGCTCAGCAGGCTATTGCTGCCAAAGACGCTCTTCAGAGTATGGTTTTCGATACGGAATCGAAGGCGGTGTTGCATACGGAGATGGCAAAGAAGAATCTATTTGTGAAAAGAGGGATTGTAGGCGATTCAAATGCTTATGATCAGAGCAAACGGTTGCGTACTGGTGACTACACGCAGGCTGGTTATTCCAGTCCGGTGCCTTTTCATCCTCCGCCGCCACCTGTTTGGGGACCACATGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTTACCCTGTTGCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCTAGCAGTTATGTACCTGTTTTGAACACAAAGGATAATCCACCATGCAATACCTTATTCATTGGCAATCTAGGAGAGAGCATTAATGAGGAAGAACTAAGGGGTCTATTCAGCTCACAACCTGGATTTAAACAAATGAAGATCTTGAGACAGGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCACCGCTGTACACCACAATTTTCAGGGGGCTGTTATCCCCAGTTCTGGTTCAATAGGCATGAGAATACAATACTCAAAGAACCCATTTGGTAAAAGGAAGGATGGGAACTACCCTGCCCCTGCTGCAAATGGAGGTTCACCAGCTATGACATACCAGTAG

Protein Analysis

325

Amino Acids

35.22

Weight (kDa)

7.16

Isoelectric Point (pI)

67.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 224 - 285 6.7e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 8, 484
AccBSI CCGCTC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 86
AclWI GGATC 1 cut(s) 551
AcoI YGGCCR 2 cut(s) 3, 69
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 5 cut(s) 448, 585, 609, 630, 825
AfiI CCNNNNNNNGG 3 cut(s) 37, 515, 860
AgeI ACCGGT 1 cut(s) 164
AgsI TTSAA 4 cut(s) 417, 640, 800, 867
AjnI CCWGG 1 cut(s) 736
AjuI GAANNNNNNNTTGG 2 cut(s) 580, 612
AluBI AGCT 3 cut(s) 270, 729, 959
AluI AGCT 3 cut(s) 270, 729, 959
Alw26I GTCTC 1 cut(s) 757
AlwI GGATC 1 cut(s) 551
AoxI GGCC 5 cut(s) 3, 39, 69, 128, 231
ApaI GGGCCC 1 cut(s) 43
ApeKI GCWGC 3 cut(s) 50, 305, 938
AseI ATTAAT 1 cut(s) 699
AsiGI ACCGGT 1 cut(s) 164
AspLEI GCGC 2 cut(s) 11, 88
AspS9I GGNCC 5 cut(s) 39, 40, 129, 145, 518
AsuC2I CCSGG 3 cut(s) 44, 68, 222
AsuHPI GGTGA 4 cut(s) 95, 154, 464, 945
AvaII GGWCC 2 cut(s) 145, 518
BaeGI GKGCMC 1 cut(s) 43
BanI GGYRCC 2 cut(s) 8, 484
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 62, 292, 925
BccI CCATC 4 cut(s) 161, 207, 364, 911
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 1 cut(s) 738
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 3 cut(s) 44, 68, 222
BcoDI GTCTC 1 cut(s) 757
BfaI CTAG 2 cut(s) 618, 686
BfoI RGCGCY 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 47
BglII AGATCT 1 cut(s) 756
BisI GCNGC 7 cut(s) 48, 51, 81, 84, 306, 503, 939
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 7 cut(s) 49, 52, 82, 85, 307, 504, 940
Bme1390I CCNGG 4 cut(s) 44, 68, 222, 738
Bme18I GGWCC 2 cut(s) 145, 518
BmgT120I GGNCC 5 cut(s) 39, 40, 129, 145, 518
BmiI GGNNCC 6 cut(s) 10, 41, 42, 486, 519, 537
BmrFI CCNGG 4 cut(s) 44, 68, 222, 738
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 259, 291
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 781
BpuMI CCSGG 3 cut(s) 44, 68, 222
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 42, 66
BsaWI WCCGGW 2 cut(s) 164, 481
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 515, 860
Bse118I RCCGGY 4 cut(s) 5, 11, 126, 164
Bse1I ACTGG 5 cut(s) 454, 477, 581, 855, 970
Bse3DI GCAATG 1 cut(s) 41
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 2 cut(s) 42, 66
BseGI GGATG 3 cut(s) 15, 493, 922
BseLI CCNNNNNNNGG 3 cut(s) 37, 515, 860
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 3 cut(s) 200, 251, 305
BseNI ACTGG 5 cut(s) 454, 477, 581, 855, 970
BseRI GAGGAG 5 cut(s) 48, 51, 87, 90, 537
BseSI GKGCMC 1 cut(s) 43
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 62, 292, 925
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 5 cut(s) 5, 41, 71, 130, 233
BshNI GGYRCC 2 cut(s) 8, 484
BshTI ACCGGT 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 72
BsiSI CCGG 8 cut(s) 6, 12, 44, 68, 127, 165, 221, 482
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 37, 515, 860
BsmAI GTCTC 1 cut(s) 757
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 5 cut(s) 5, 41, 71, 130, 233
Bsp120I GGGCCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 3 cut(s) 427, 556, 756
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 5 cut(s) 5, 41, 71, 130, 233
BspCNI CTCAG 3 cut(s) 201, 250, 304
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 6 cut(s) 10, 41, 42, 486, 519, 537
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 2 cut(s) 8, 484
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 41
BsrFI RCCGGY 4 cut(s) 5, 11, 126, 164
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 5 cut(s) 454, 477, 581, 855, 970
BssAI RCCGGY 4 cut(s) 5, 11, 126, 164
BssECI CCNNGG 2 cut(s) 42, 66
BssMI GATC 3 cut(s) 427, 556, 756
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 441, 781, 812
Bst6I CTCTTC 2 cut(s) 284, 324
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 823
BstC8I GCNNGC 5 cut(s) 7, 13, 132, 297, 465
BstDEI CTNAG 4 cut(s) 209, 237, 291, 713
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 3 cut(s) 15, 493, 922
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 88
BstKTI GATC 3 cut(s) 430, 559, 759
BstMAI GTCTC 1 cut(s) 757
BstMBI GATC 3 cut(s) 427, 556, 756
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 7 cut(s) 47, 77, 281, 296, 305, 314, 938
BstNI CCWGG 1 cut(s) 738
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 4 cut(s) 42, 66, 220, 736
BstSLI GKGCMC 1 cut(s) 43
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 3 cut(s) 62, 292, 925
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 756
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 1 cut(s) 756
BstZI CGGCCG 1 cut(s) 69
BsuRI GGCC 5 cut(s) 5, 41, 71, 130, 233
BtsCI GGATG 3 cut(s) 15, 493, 922
BtsIMutI CAGTG 1 cut(s) 817
Cac8I GCNNGC 5 cut(s) 7, 13, 132, 297, 465
CfoI GCGC 2 cut(s) 11, 88
Cfr10I RCCGGY 4 cut(s) 5, 11, 126, 164
Cfr13I GGNCC 5 cut(s) 39, 40, 129, 145, 518
CseI GACGC 1 cut(s) 323
Csp6I GTAC 5 cut(s) 447, 584, 608, 629, 824
CspAI ACCGGT 1 cut(s) 164
CviAII CATG 3 cut(s) 524, 660, 874
CviQI GTAC 5 cut(s) 447, 584, 608, 629, 824
DdeI CTNAG 4 cut(s) 209, 237, 291, 713
DinI GGCGCC 1 cut(s) 10
DpnI GATC 3 cut(s) 429, 558, 758
DpnII GATC 3 cut(s) 427, 556, 756
DraI TTTAAA 1 cut(s) 745
EaeI YGGCCR 2 cut(s) 3, 69
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 284, 324
EarI CTCTTC 2 cut(s) 284, 324
EciI GGCGGA 1 cut(s) 489
EclXI CGGCCG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 145, 518
Eco52I CGGCCG 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 736
EcoT38I GRGCYC 1 cut(s) 43
EgeI GGCGCC 1 cut(s) 10
EheI GGCGCC 1 cut(s) 10
FaeI CATG 3 cut(s) 527, 663, 877
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 531
FatI CATG 3 cut(s) 523, 659, 873
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 2 cut(s) 553, 562
FbaI TGATCA 1 cut(s) 427
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 7 cut(s) 48, 51, 81, 84, 306, 503, 939
FokI GGATG 3 cut(s) 2, 480, 929
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 7 cut(s) 48, 51, 81, 84, 306, 503, 939
FspBI CTAG 2 cut(s) 618, 686
GlaI GCGC 2 cut(s) 10, 87
GluI GCNGC 7 cut(s) 48, 51, 81, 84, 306, 503, 939
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 5 cut(s) 5, 41, 71, 130, 233
HapII CCGG 8 cut(s) 6, 12, 44, 68, 127, 165, 221, 482
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 11, 88
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 527, 663, 877
Hin6I GCGC 2 cut(s) 9, 86
HinP1I GCGC 2 cut(s) 9, 86
HincII GTYRAC 2 cut(s) 115, 244
HindII GTYRAC 2 cut(s) 115, 244
HinfI GANTC 3 cut(s) 344, 382, 413
HpaII CCGG 8 cut(s) 6, 12, 44, 68, 127, 165, 221, 482
HphI GGTGA 4 cut(s) 95, 154, 464, 945
Hpy166II GTNNAC 5 cut(s) 115, 244, 808, 826, 953
Hpy188I TCNGA 2 cut(s) 324, 432
Hpy188III TCNNGA 3 cut(s) 173, 208, 760
Hpy8I GTNNAC 5 cut(s) 115, 244, 808, 826, 953
Hpy99I CGWCG 4 cut(s) 77, 80, 116, 143
HpyAV CCTTC 3 cut(s) 343, 606, 907
HpyCH4III ACNGT 3 cut(s) 441, 781, 812
HpyCH4V TGCA 3 cut(s) 361, 663, 941
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 77, 281, 296, 305, 314, 938
HpyF3I CTNAG 4 cut(s) 209, 237, 291, 713
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 527, 663, 877
HspAI GCGC 2 cut(s) 9, 86
KasI GGCGCC 1 cut(s) 8
KroI GCCGGC 2 cut(s) 5, 11
KroNI GCCGGC 2 cut(s) 7, 13
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 427, 556, 756
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 3 cut(s) 541, 583, 607
Lsp1109I GCAGC 3 cut(s) 62, 292, 925
LweI GCATC 1 cut(s) 24
MaeI CTAG 2 cut(s) 618, 686
MaeIII GTNAC 2 cut(s) 452, 566
MalI GATC 3 cut(s) 429, 558, 758
MbiI CCGCTC 1 cut(s) 290
MboI GATC 3 cut(s) 427, 556, 756
MboII GAAGA 9 cut(s) 148, 161, 188, 271, 311, 391, 719, 766, 812
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 832
Mly113I GGCGCC 1 cut(s) 9
MroNI GCCGGC 2 cut(s) 5, 11
MseI TTAA 2 cut(s) 699, 744
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 8 cut(s) 6, 12, 44, 68, 127, 165, 221, 482
MspR9I CCNGG 4 cut(s) 44, 68, 222, 738
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 7 cut(s) 47, 77, 281, 296, 305, 314, 938
NaeI GCCGGC 2 cut(s) 7, 13
NarI GGCGCC 1 cut(s) 9
NciI CCSGG 3 cut(s) 44, 68, 222
NdeI CATATG 2 cut(s) 553, 562
NdeII GATC 3 cut(s) 427, 556, 756
NgoMIV GCCGGC 2 cut(s) 5, 11
NlaIII CATG 3 cut(s) 527, 663, 877
NlaIV GGNNCC 6 cut(s) 10, 41, 42, 486, 519, 537
NmuCI GTSAC 1 cut(s) 452
PceI AGGCCT 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 324
PdiI GCCGGC 2 cut(s) 7, 13
PfeI GAWTC 3 cut(s) 344, 382, 413
PflFI GACNNNGTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 164
PkrI GCNGC 7 cut(s) 49, 52, 82, 85, 307, 504, 940
PluTI GGCGCC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 699
Psp6I CCWGG 1 cut(s) 736
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 6 cut(s) 10, 41, 42, 486, 519, 537
PspOMI GGGCCC 1 cut(s) 39
PspPI GGNCC 5 cut(s) 39, 40, 129, 145, 518
PsuI RGATCY 1 cut(s) 756
PsyI GACNNNGTC 1 cut(s) 143
RsaI GTAC 5 cut(s) 448, 585, 609, 630, 825
RsaNI GTAC 5 cut(s) 447, 584, 608, 629, 824
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 699, 744
SatI GCNGC 7 cut(s) 48, 51, 81, 84, 306, 503, 939
Sau3AI GATC 3 cut(s) 427, 556, 756
Sau96I GGNCC 5 cut(s) 39, 40, 129, 145, 518
ScrFI CCNGG 4 cut(s) 44, 68, 222, 738
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 1 cut(s) 24
SfoI GGCGCC 1 cut(s) 10
SinI GGWCC 2 cut(s) 145, 518
SmlI CTYRAG 1 cut(s) 760
SmoI CTYRAG 1 cut(s) 760
Sse9I AATT 1 cut(s) 832
SseBI AGGCCT 1 cut(s) 233
SspDI GGCGCC 1 cut(s) 8
SspMI CTAG 2 cut(s) 618, 686
StuI AGGCCT 1 cut(s) 233
StyD4I CCNGG 4 cut(s) 42, 66, 220, 736
TaaI ACNGT 3 cut(s) 441, 781, 812
TaqI TCGA 3 cut(s) 114, 336, 347
TasI AATT 1 cut(s) 832
TatI WGTACW 1 cut(s) 823
TauI GCSGC 4 cut(s) 50, 83, 86, 505
TfiI GAWTC 3 cut(s) 344, 382, 413
Tru1I TTAA 2 cut(s) 699, 744
Tru9I TTAA 2 cut(s) 699, 744
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 3 cut(s) 50, 305, 938
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 5 cut(s) 148, 482, 664, 767, 778
TspGWI ACGGA 2 cut(s) 356, 380
TspRI CASTG 1 cut(s) 817
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 145, 518
VspI ATTAAT 1 cut(s) 699
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 618, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.