Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

67983679 .. 67987909

Gene Structure 4231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGCGCCGGCAGCCGCCCCGCCTCCTCCTCCGGCCGTCGTCGCCGCCGCCCTCCGCCTCCGCCTCACCACCTCGTCGACAACCCGAACCGTCCCGCCAACGACGAGGTCCGCACCATTTTCATCACCGGTCTTCCCGAAGATGTGAAGGAGAGGGAGATACAGAACCTCCTCCGATGGCTCCCGGGCTACGAGGCCTCCCAGGTCAACTACAAAGGCGAGAAGCCCATGAGCTTCGCGCTCTTCGCCACTGCTCAGCAAGCTATCGCTGCCAAAGACGCTCTTCAGAGTATGGTTTTCGATACGGAATCGAAGGCGGTGTTGCATACGGAGATGGCAAAGAAGAATCTTTTTGTGAAAAGAGGGATTGTAGGGGATTCAAATGCTTATGATCAAAGTAAACGATTGCGTACTGGTGACTACACACAGGCTGGTTATTCCAGTCCGGTGCCTTTTCATCCGCCACCGCCACCTGTTTGGGGACCACACGGGTATATGGCTCCACCACCTCCTCCATATGATCCATATGGTTATCCTGTTGCTCCAGTACCAATGCCCCCTTCTGCTCCTGTACCAGCACCCAGCAGTTATGTACCTGTTCTGAACACAAAAGATAATCCACCATGCAATACCTTATTTATTGGCAATCTAGGAGAGAGCATTAACGAGGAAGAACTGAGGGGCCTATTCAGCTCACAACCTGGATTTAAGCAAATGAAGATCTTGCGACAGGAAAGGCATACTGTTTGCTTCATTGAGTTTGAAGATGTAAACAGTGCCACTGCTGTACACCACAATTTTCAAGGTGCTGTTATCCCCAGTTCTGGTTCTATAGGCATGAGAATACAATATCCTTTTATTACTTTGTTATCACTGATCCTTTTGGTTGTTTATGCAACTTTTATATATATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

305

Amino Acids

33.74

Weight (kDa)

8.74

Isoelectric Point (pI)

74.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	212 - 273	6.1e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 448
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	239
AclWI	GGATC	2 cut(s)	515, 871
AcoI	YGGCCR	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	5 cut(s)	412, 549, 573, 594, 789
AfiI	CCNNNNNNNGG	2 cut(s)	479, 824
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	381, 764, 803
AjnI	CCWGG	2 cut(s)	201, 700
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AluBI	AGCT	3 cut(s)	234, 263, 693
AluI	AGCT	3 cut(s)	234, 263, 693
AlwI	GGATC	2 cut(s)	515, 871
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	3 cut(s)	34, 195, 682
ApeKI	GCWGC	2 cut(s)	12, 269
AsiGI	ACCGGT	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	8, 241
AspS9I	GGNCC	3 cut(s)	109, 482, 682
AsuC2I	CCSGG	2 cut(s)	185, 186
AsuHPI	GGTGA	3 cut(s)	59, 118, 428
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	109, 482
BanI	GGYRCC	2 cut(s)	5, 448
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	24, 256
BccI	CCATC	2 cut(s)	171, 328
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	2 cut(s)	203, 702
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	2 cut(s)	185, 186
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	831
BfoI	RGCGCY	1 cut(s)	9
BglII	AGATCT	1 cut(s)	720
BisI	GCNGC	5 cut(s)	13, 16, 46, 49, 270
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	5 cut(s)	14, 17, 47, 50, 271
Bme1390I	CCNGG	4 cut(s)	185, 186, 203, 702
Bme18I	GGWCC	2 cut(s)	109, 482
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	109, 482, 682
BmiI	GGNNCC	6 cut(s)	7, 182, 450, 483, 501, 683
BmrFI	CCNGG	4 cut(s)	185, 186, 203, 702
BmrI	ACTGGG	1 cut(s)	813
BmuI	ACTGGG	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	185, 186
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	184, 201
BsaWI	WCCGGW	2 cut(s)	128, 445
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 182, 183, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 824
Bse118I	RCCGGY	2 cut(s)	8, 128
Bse1I	ACTGG	4 cut(s)	418, 441, 545, 819
BseBI	CCWGG	2 cut(s)	203, 702
BseDI	CCNNGG	2 cut(s)	184, 201
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	479, 824
BseMII	CTCAG	2 cut(s)	269, 668
BseNI	ACTGG	4 cut(s)	418, 441, 545, 819
BseRI	GAGGAG	4 cut(s)	16, 19, 161, 501
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	24, 256
BseYI	CCCAGC	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	3 cut(s)	36, 197, 684
BshNI	GGYRCC	2 cut(s)	5, 448
BshTI	ACCGGT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	5 cut(s)	9, 33, 129, 185, 446
BslFI	GGGAC	2 cut(s)	78, 495
BslI	CCNNNNNNNGG	2 cut(s)	479, 824
BsmFI	GGGAC	2 cut(s)	78, 495
BsnI	GGCC	3 cut(s)	36, 197, 684
BsoBI	CYCGRG	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	4 cut(s)	391, 520, 720, 876
Bsp1720I	GCTNAGC	1 cut(s)	255
BspANI	GGCC	3 cut(s)	36, 197, 684
BspCNI	CTCAG	2 cut(s)	268, 669
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	6 cut(s)	7, 182, 450, 483, 501, 683
BspPI	GGATC	2 cut(s)	515, 871
BspQI	GCTCTTC	2 cut(s)	248, 288
BspT107I	GGYRCC	2 cut(s)	5, 448
BsrFI	RCCGGY	2 cut(s)	8, 128
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	4 cut(s)	418, 441, 545, 819
BssAI	RCCGGY	2 cut(s)	8, 128
BssECI	CCNNGG	2 cut(s)	184, 201
BssMI	GATC	4 cut(s)	391, 520, 720, 876
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	203, 702
Bst4CI	ACNGT	3 cut(s)	92, 745, 776
Bst6I	CTCTTC	2 cut(s)	248, 288
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	10, 261
BstDEI	CTNAG	2 cut(s)	255, 677
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 241
BstKTI	GATC	4 cut(s)	394, 523, 723, 879
BstMBI	GATC	4 cut(s)	391, 520, 720, 876
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 42, 245, 260, 269, 278, 690
BstNI	CCWGG	2 cut(s)	203, 702
BstSCI	CCNGG	4 cut(s)	183, 184, 201, 700
BstSFI	CTRYAG	1 cut(s)	831
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	24, 256
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	720
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	36, 197, 684
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	2 cut(s)	249, 780
BtsIMutI	CAGTG	4 cut(s)	249, 780, 781, 872
Cac8I	GCNNGC	2 cut(s)	10, 261
CfoI	GCGC	2 cut(s)	8, 241
Cfr10I	RCCGGY	2 cut(s)	8, 128
Cfr13I	GGNCC	3 cut(s)	109, 482, 682
Cfr9I	CCCGGG	1 cut(s)	184
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	5 cut(s)	411, 548, 572, 593, 788
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	3 cut(s)	229, 624, 838
CviQI	GTAC	5 cut(s)	411, 548, 572, 593, 788
DdeI	CTNAG	2 cut(s)	255, 677
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	4 cut(s)	393, 522, 722, 878
DpnII	GATC	4 cut(s)	391, 520, 720, 876
EaeI	YGGCCR	1 cut(s)	34
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	248, 288
EarI	CTCTTC	2 cut(s)	248, 288
EciI	GGCGGA	3 cut(s)	45, 51, 450
EclXI	CGGCCG	1 cut(s)	34
Eco147I	AGGCCT	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	109, 482
Eco52I	CGGCCG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	201, 700
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
FaeI	CATG	3 cut(s)	232, 627, 841
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FaqI	GGGAC	2 cut(s)	78, 495
FatI	CATG	3 cut(s)	228, 623, 837
FauI	CCCGC	2 cut(s)	28, 103
FauNDI	CATATG	2 cut(s)	517, 526
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	13, 16, 46, 49, 270
FokI	GGATG	1 cut(s)	444
Fsp4HI	GCNGC	5 cut(s)	13, 16, 46, 49, 270
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	2 cut(s)	7, 240
GluI	GCNGC	5 cut(s)	13, 16, 46, 49, 270
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	528
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	3 cut(s)	36, 197, 684
HapII	CCGG	5 cut(s)	9, 33, 129, 185, 446
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	2 cut(s)	8, 241
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	232, 627, 841
Hin6I	GCGC	2 cut(s)	6, 239
HinP1I	GCGC	2 cut(s)	6, 239
HincII	GTYRAC	2 cut(s)	79, 208
HindII	GTYRAC	2 cut(s)	79, 208
HinfI	GANTC	3 cut(s)	308, 346, 377
HpaII	CCGG	5 cut(s)	9, 33, 129, 185, 446
HphI	GGTGA	3 cut(s)	59, 118, 428
Hpy166II	GTNNAC	5 cut(s)	79, 208, 401, 772, 790
Hpy188I	TCNGA	3 cut(s)	176, 288, 603
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	5 cut(s)	79, 208, 401, 772, 790
Hpy99I	CGWCG	4 cut(s)	42, 45, 80, 107
HpyAV	CCTTC	3 cut(s)	142, 307, 570
HpyCH4III	ACNGT	3 cut(s)	92, 745, 776
HpyCH4V	TGCA	3 cut(s)	325, 627, 896
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 42, 245, 260, 269, 278, 690
HpyF3I	CTNAG	2 cut(s)	255, 677
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	232, 627, 841
HspAI	GCGC	2 cut(s)	6, 239
KasI	GGCGCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	391, 520, 720, 876
LguI	GCTCTTC	2 cut(s)	248, 288
LmnI	GCTCC	4 cut(s)	186, 505, 547, 571
Lsp1109I	GCAGC	2 cut(s)	24, 256
MaeI	CTAG	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	4 cut(s)	393, 522, 722, 878
MboI	GATC	4 cut(s)	391, 520, 720, 876
MboII	GAAGA	8 cut(s)	125, 152, 235, 275, 355, 683, 730, 776
MflI	RGATCY	1 cut(s)	720
MluCI	AATT	2 cut(s)	796, 913
Mly113I	GGCGCC	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	8
MseI	TTAA	2 cut(s)	663, 708
MspI	CCGG	5 cut(s)	9, 33, 129, 185, 446
MspR9I	CCNGG	4 cut(s)	185, 186, 203, 702
MvaI	CCWGG	2 cut(s)	203, 702
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	7 cut(s)	12, 42, 245, 260, 269, 278, 690
NaeI	GCCGGC	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	185, 186
NdeI	CATATG	2 cut(s)	517, 526
NdeII	GATC	4 cut(s)	391, 520, 720, 876
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	3 cut(s)	232, 627, 841
NlaIV	GGNNCC	6 cut(s)	7, 182, 450, 483, 501, 683
NmuCI	GTSAC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	197
PciSI	GCTCTTC	2 cut(s)	248, 288
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	308, 346, 377
PflFI	GACNNNGTC	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	14, 17, 47, 50, 271
PluTI	GGCGCC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	201, 700
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	2 cut(s)	201, 700
PspN4I	GGNNCC	6 cut(s)	7, 182, 450, 483, 501, 683
PspPI	GGNCC	3 cut(s)	109, 482, 682
PsuI	RGATCY	1 cut(s)	720
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	5 cut(s)	412, 549, 573, 594, 789
RsaNI	GTAC	5 cut(s)	411, 548, 572, 593, 788
SalI	GTCGAC	1 cut(s)	77
SapI	GCTCTTC	2 cut(s)	248, 288
SaqAI	TTAA	2 cut(s)	663, 708
SatI	GCNGC	5 cut(s)	13, 16, 46, 49, 270
Sau3AI	GATC	4 cut(s)	391, 520, 720, 876
Sau96I	GGNCC	3 cut(s)	109, 482, 682
ScrFI	CCNGG	4 cut(s)	185, 186, 203, 702
SfcI	CTRYAG	1 cut(s)	831
SfoI	GGCGCC	1 cut(s)	7
SinI	GGWCC	2 cut(s)	109, 482
SmaI	CCCGGG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	796, 913
SseBI	AGGCCT	1 cut(s)	197
SspDI	GGCGCC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	650
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	4 cut(s)	183, 184, 201, 700
TaaI	ACNGT	3 cut(s)	92, 745, 776
TaqI	TCGA	3 cut(s)	78, 300, 311
TasI	AATT	2 cut(s)	796, 913
TatI	WGTACW	1 cut(s)	787
TauI	GCSGC	3 cut(s)	18, 48, 51
TfiI	GAWTC	3 cut(s)	308, 346, 377
Tru1I	TTAA	2 cut(s)	663, 708
Tru9I	TTAA	2 cut(s)	663, 708
TscAI	CASTG	4 cut(s)	256, 781, 787, 879
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	12, 269
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	112, 446, 731, 742
TspGWI	ACGGA	2 cut(s)	320, 344
TspMI	CCCGGG	1 cut(s)	184
TspRI	CASTG	4 cut(s)	256, 781, 787, 879
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	109, 482
XmaI	CCCGGG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.