Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003051

Physical Location & Seq

Genomic Coordinates Reverse (-)

9266371 .. 9266715

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14953.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCGGCGCCGGCATCCACCCCTACCACCAGCAATGGGCCCCAGCGGCAGCCCCTCCTCCTTCCCCGACCGTTGTCGCCGCCGCGCCTCCACCTCCTCCTCACCACCTCGTCGACAACCCCAACTGGGCCGCCAATGACGAGGTCCACACCATCTTCATCACCGGTCTTCCCGAAGATGTCAAGGAGAGGGAGATACAGAACCTCCTGAGATGGCTTCCCGACTACGAGGCCTCTCAGGTCAACTACAAAGGCGAGAAGCCGATGAGCTTCGCGCTCTTCGCCCCCGCTCAGCAGGTTATTGCTGCCAAAGACGCTCTTCAGGTTCGTGCTTTCATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009887 GO:0009889 GO:0009966 GO:0009968 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035239 GO:0035295 GO:0042127 GO:0042802 GO:0042803 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046983 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048660 GO:0048661 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051147 GO:0051148 GO:0051150 GO:0051151 GO:0051171 GO:0051252 GO:0055123 GO:0060255 GO:0065007 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

115

Amino Acids

12.5

Weight (kDa)

5.38

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21215 AT3G21215 AT3G21215 AT3G21215
fragaria_vesca	FvH4_3g14953 FvH4_3g16432 FvH4_4g15800 FvH4_4g32761 FvH4_5g34521 FvH4_6g16241 FvH4_6g37450 FvH4_6g45392 FvH4_7g15921 FvH4_7g31684
malus_domestica	MD09G1158000.v1.1 MD17G1144000.v1.1
prunus_persica	Prupe.3G168000_v2.0.a1
pyrus_communis	pycom09g07680 pycom17g13730
rosa_chinensis	RchiOBHm_Chr2g0150271 RchiOBHm_Chr2g0150291
rosa_laevigata	RLG00000020483
rosa_multiflora	Rmu_sc0001169.1_g000003 Rmu_sc0020705.1_g000001 Rmu_sc0024000.1_g000001 Rmu_sc0038093.1_g000001 Rmu_sc0040821.1_g000001 Rmu_ssc0000020.1_g000001
rosa_roxburghii	Rroxscaffold_2G00097320 Rroxscaffold_2G00097330
rosa_rugosa	Rorug02G0420200 Rorug02G0420300
rosa_samantha	Rh2AG479200 Rh2BG491500 Rh2CG465400 Rh2DG500300
rosa_wichuraiana	Rw2G038980 Rw2G039110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	8
AccBSI	CCGCTC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	2 cut(s)	86, 275
AciI	CCGC	5 cut(s)	47, 81, 84, 132, 288
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	37, 127
AgeI	ACCGGT	1 cut(s)	164
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
AoxI	GGCC	4 cut(s)	3, 39, 129, 231
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	50, 305
AsiGI	ACCGGT	1 cut(s)	164
AspLEI	GCGC	3 cut(s)	11, 88, 277
AspS9I	GGNCC	4 cut(s)	39, 40, 129, 145
AsuHPI	GGTGA	2 cut(s)	95, 154
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	62, 292
BccI	CCATC	2 cut(s)	161, 207
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	6 cut(s)	48, 51, 81, 84, 132, 306
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	6 cut(s)	49, 52, 82, 85, 133, 307
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	4 cut(s)	39, 40, 129, 145
BmiI	GGNNCC	3 cut(s)	10, 41, 42
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	136
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	9
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 127
Bse118I	RCCGGY	3 cut(s)	5, 11, 164
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	37, 127
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	3 cut(s)	200, 251, 305
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	48, 87, 90
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	62, 292
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	86, 275
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	5, 41, 131, 233
BshNI	GGYRCC	1 cut(s)	8
BshTI	ACCGGT	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	6, 12, 165
BslI	CCNNNNNNNGG	2 cut(s)	37, 127
BsnI	GGCC	4 cut(s)	5, 41, 131, 233
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	5 cut(s)	47, 81, 84, 132, 288
BspANI	GGCC	4 cut(s)	5, 41, 131, 233
BspCNI	CTCAG	3 cut(s)	201, 250, 304
BspFNI	CGCG	2 cut(s)	86, 275
BspLI	GGNNCC	3 cut(s)	10, 41, 42
BspMI	ACCTGC	1 cut(s)	286
BspQI	GCTCTTC	2 cut(s)	284, 324
BspT107I	GGYRCC	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	3 cut(s)	5, 11, 164
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	3 cut(s)	5, 11, 164
BssNI	GRCGYC	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	284, 324
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	7, 13
BstDEI	CTNAG	3 cut(s)	209, 237, 291
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	2 cut(s)	86, 275
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	3 cut(s)	11, 88, 277
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 281, 314
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	2 cut(s)	86, 275
BstV1I	GCAGC	2 cut(s)	62, 292
BstV2I	GAAGAC	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	5, 41, 131, 233
BtsCI	GGATG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	7, 13
CfoI	GCGC	3 cut(s)	11, 88, 277
Cfr10I	RCCGGY	3 cut(s)	5, 11, 164
Cfr13I	GGNCC	4 cut(s)	39, 40, 129, 145
CseI	GACGC	1 cut(s)	323
CspAI	ACCGGT	1 cut(s)	164
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	5, 41, 53, 131, 217, 233, 262, 270
CviKI_1	RGCY	8 cut(s)	5, 41, 53, 131, 217, 233, 262, 270
DdeI	CTNAG	3 cut(s)	209, 237, 291
DinI	GGCGCC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	284, 324
EarI	CTCTTC	2 cut(s)	284, 324
Eco147I	AGGCCT	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	43
EgeI	GGCGCC	1 cut(s)	10
EheI	GGCGCC	1 cut(s)	10
FaeI	CATG	1 cut(s)	340
FaiI	YATR	1 cut(s)	338
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	6 cut(s)	48, 51, 81, 84, 132, 306
FokI	GGATG	1 cut(s)	2
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	6 cut(s)	48, 51, 81, 84, 132, 306
GlaI	GCGC	3 cut(s)	10, 87, 276
GluI	GCNGC	6 cut(s)	48, 51, 81, 84, 132, 306
GsaI	CCCAGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	5, 41, 131, 233
HapII	CCGG	3 cut(s)	6, 12, 165
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	3 cut(s)	11, 88, 277
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	3 cut(s)	9, 86, 275
HinP1I	GCGC	3 cut(s)	9, 86, 275
HincII	GTYRAC	2 cut(s)	115, 244
HindII	GTYRAC	2 cut(s)	115, 244
HpaII	CCGG	3 cut(s)	6, 12, 165
HphI	GGTGA	2 cut(s)	95, 154
Hpy166II	GTNNAC	3 cut(s)	115, 148, 244
Hpy188III	TCNNGA	3 cut(s)	173, 208, 221
Hpy8I	GTNNAC	3 cut(s)	115, 148, 244
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 281, 314
HpyF3I	CTNAG	3 cut(s)	209, 237, 291
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	3 cut(s)	9, 86, 275
KasI	GGCGCC	1 cut(s)	8
KroI	GCCGGC	2 cut(s)	5, 11
KroNI	GCCGGC	2 cut(s)	7, 13
LguI	GCTCTTC	2 cut(s)	284, 324
Lsp1109I	GCAGC	2 cut(s)	62, 292
LweI	GCATC	1 cut(s)	24
MbiI	CCGCTC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	148, 161, 188, 271, 311
MhlI	GDGCHC	1 cut(s)	43
Mly113I	GGCGCC	1 cut(s)	9
MroNI	GCCGGC	2 cut(s)	5, 11
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	3 cut(s)	6, 12, 165
MvnI	CGCG	2 cut(s)	86, 275
MwoI	GCNNNNNNNGC	3 cut(s)	47, 281, 314
NaeI	GCCGGC	2 cut(s)	7, 13
NarI	GGCGCC	1 cut(s)	9
NgoMIV	GCCGGC	2 cut(s)	5, 11
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	3 cut(s)	10, 41, 42
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	2 cut(s)	284, 324
PdiI	GCCGGC	2 cut(s)	7, 13
PflFI	GACNNNGTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	49, 52, 82, 85, 133, 307
PluTI	GGCGCC	1 cut(s)	12
PshAI	GACNNNNGTC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	43
PspN4I	GGNNCC	3 cut(s)	10, 41, 42
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	4 cut(s)	39, 40, 129, 145
PsyI	GACNNNGTC	1 cut(s)	143
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	284, 324
SatI	GCNGC	6 cut(s)	48, 51, 81, 84, 132, 306
Sau96I	GGNCC	4 cut(s)	39, 40, 129, 145
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	8 cut(s)	97, 111, 147, 207, 243, 272, 300, 327
SfaNI	GCATC	1 cut(s)	24
SfoI	GGCGCC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	5 cut(s)	47, 81, 84, 132, 288
SspDI	GGCGCC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	114
TauI	GCSGC	4 cut(s)	50, 83, 86, 134
TseI	GCWGC	2 cut(s)	50, 305
TspDTI	ATGAA	2 cut(s)	148, 325
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.